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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105097 (47 seq.)
>W1711093750
LTFH01000011
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
20095
20013
-
Tyr
GTA
[ENA]
¡û
>W1711094411
LTFX01000006
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
25678
25594
-
Tyr
GTA
[ENA]
¡û
>W1711096815
LTIB01000138
Actinomycetota
Corynebacterium sp. HMSC071F07 [LTIB]
6639
6555
-
Tyr
GTA
[ENA]
¡û
>W1711099754
LTKT01000025
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
21784
21700
-
Tyr
GTA
[ENA]
¡û
>W1711102620
LTNW01000043
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
3792
3708
-
Tyr
GTA
[ENA]
¡û
>W1711106239
LTRQ01000069
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
18977
18895
-
Tyr
GTA
[ENA]
¡û
>W1711108483
LTTU01000035
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
160170
160252
+
Tyr
GTA
[ENA]
¡û
>W1711186918
LWOP01000038
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
239
155
-
Tyr
GTA
[ENA]
¡û
>W1711507522
MKXT01000003
Actinomycetota
Corynebacterium sp. S5S1 [MKXT]
358
274
-
Tyr
GTA
[ENA]
¡û
>W131159206
AQUW01000001
Actinomycetota
Corynebacterium ciconiae DSM 44920 [AQUW]
324511
324595
+
Tyr
GTA
[ENA]
¡û
>WENV180711561
ODFP01001755
[ODFP] human metagenome; G_DNA_Anterior nares
523
605
+
Tyr
GTA
[ENA]
¢þ
>WENV180912907
ODSP01004973
[ODSP] human metagenome; G_DNA_Anterior nares
144
226
+
Tyr
GTA
[ENA]
¢þ
>WENV180913494
ODSU01007011
[ODSU] human metagenome; G_DNA_Anterior nares
376
294
-
Tyr
GTA
[ENA]
¢þ
>WENV180917970
ODTF01000004
[ODTF] human metagenome; G_DNA_Anterior nares
12351
12433
+
Tyr
GTA
[ENA]
¢þ
>WENV180984691
ODVI01002501
[ODVI] human metagenome; G_DNA_Anterior nares
284
366
+
Tyr
GTA
[ENA]
¢þ
>WENV181212700
OFBT01000241
[OFBT] metagenome; hydrothermal vent
316
234
-
Tyr
GTA
[ENA]
¢þ
>WENV181212711
OFBT01000602
[OFBT] metagenome; hydrothermal vent
288
206
-
Tyr
GTA
[ENA]
¢þ
>W141154961
AXLP01000001
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
475422
475506
+
Tyr
GTA
[ENA]
¡û
>W141155163
AXLT01000003
Actinomycetota
Corynebacterium sp. KPL1860 [AXLT]
101019
101101
+
Tyr
GTA
[ENA]
¡û
>W141155233
AXLU01000017
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
14035
14119
+
Tyr
GTA
[ENA]
¡û
>W141155514
AXMA01000002
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
587110
587194
+
Tyr
GTA
[ENA]
¡û
>WENV182629829
OJKV01000039
[OJKV] metagenome; surface
6050
6132
+
Tyr
GTA
[ENA]
¢þ
>WENV182646223
OJMA01000318
[OJMA] metagenome; surface
369
287
-
Tyr
GTA
[ENA]
¢þ
>WENV182803930
OJUR01000191
[OJUR] human gut metagenome; human gut
2338
2420
+
Tyr
GTA
[ENA]
¢þ
>WENV182811994
OJXO01000099
[OJXO] human gut metagenome; human gut
230
148
-
Tyr
GTA
[ENA]
¢þ
>WENV182833937
OKEX01000027
[OKEX] human gut metagenome; human gut
28172
28254
+
Tyr
GTA
[ENA]
¢þ
>WENV183083768
OLJD01002216
[OLJD] human gut metagenome; human gut
1053
1135
+
Tyr
GTA
[ENA]
¢þ
>W09122443
ACGE01000065
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
21598
21680
+
Tyr
GTA
[ENA]
¡û
>C181109984
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
642823
642905
+
Tyr
GTA
-
¡û
>C191209729
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
2058154
2058236
+
Tyr
GTA
-
¡û
>C191210911
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
1482804
1482722
-
Tyr
GTA
-
¡û
>W1910339910
FTLL01000016
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
354671
354755
+
Tyr
GTA
[ENA]
¡û
>W1910469822
FWYQ01000012
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
5356
5273
-
Tyr
GTA
[ENA]
¡û
>W1911204496
NRIN01000020
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
124080
124162
+
Tyr
GTA
[ENA]
¡û
>W1911243318
NSGK01000002
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
143354
143436
+
Tyr
GTA
[ENA]
¡û
>W1911243530
NSGO01000003
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
107225
107307
+
Tyr
GTA
[ENA]
¡û
>C151079747
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
293179
293261
+
Tyr
GTA
[Ensembl]
¡û
>W10124097
AEAU01000120
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
377918
377836
-
Tyr
GTA
[ENA]
¡û
>W1511365538
JSEF01000005
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
157991
158073
+
Tyr
GTA
[ENA]
¡û
>W1511449430
JVBA01000030
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
4411
4329
-
Tyr
GTA
[ENA]
¡û
>W11130934
AEAU01000120
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
377918
377836
-
Tyr
GTA
[ENA]
¡û
>W11164158
AFIZ01000029
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
55212
55128
-
Tyr
GTA
[ENA]
¡û
>W1610163605
FAUH01000001
Actinomycetota
Corynebacterium variabile [FAUH]
315114
315032
-
Tyr
GTA
[ENA]
¡û
>W1610419400
FIZC01000003
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
802408
802326
-
Tyr
GTA
[ENA]
¡û
>C131005341
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
2282007
2281925
-
Tyr
GTA
[Ensembl]
¡û
>W1710165272
FAUH01000001
Actinomycetota
Corynebacterium variabile [FAUH]
315114
315032
-
Tyr
GTA
[ENA]
¡û
>W1710419136
FIZC01000003
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
802408
802326
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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