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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105320 (65 seq.)
>W1710836237
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
278881
278797
-
Leu
TAG
[ENA]
¡û
>W1710901209
LNKT01000071
Campylobacterota
Sulfurovum riftiae [LNKT]
57790
57706
-
Leu
TAG
[ENA]
¡û
>WENV170575740
FPHL01000014
[FPHL] hydrothermal vent metagenome genome assembly, contig: NODE_42.; water
63574
63658
+
Leu
TAG
[ENA]
¡û
>C181199830
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
209834
209750
-
Leu
TAG
-
¡û
>C191084575
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
213155
213239
+
Leu
TAG
-
¡û
>C191147082
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
167632
167716
+
Leu
TAG
-
¡û
>C191149059
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
178253
178337
+
Leu
TAG
-
¡û
>W1910810883
MUXE01000021
Campylobacterota
Arcobacter sp. RW17-10 [MUXE]
573
489
-
Leu
TAG
[ENA]
¡û
>W1911200231
NREO01000013
Campylobacterota
Arcobacter suis CECT7833 [NREO]
593
509
-
Leu
TAG
[ENA]
¡û
>W1911424561
NXGH01000013
Campylobacterota
Arcobacter sp. LMG 9871 [NXGH]
21090
21174
+
Leu
TAG
[ENA]
¡û
>W1911424576
NXGI01000002
Campylobacterota
Arcobacter sp. LMG 9065 [NXGI]
239816
239900
+
Leu
TAG
[ENA]
¡û
>W1911426394
NXIH01000020
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
43956
44040
+
Leu
TAG
[ENA]
¡û
>W1911426462
NXIJ01000002
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
661
577
-
Leu
TAG
[ENA]
¡û
>W1911576061
PDJS01000001
Campylobacterota
Arcobacter trophiarum CECT 7650 [PDJS]
12667
12583
-
Leu
TAG
[ENA]
¡û
>W1911576396
PDJZ01000003
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
263610
263694
+
Leu
TAG
[ENA]
¡û
>W1911576531
PDKD01000001
Campylobacterota
Arcobacter trophiarum LMG 25534 [PDKD]
296521
296605
+
Leu
TAG
[ENA]
¡û
>W1911775358
QXNB01000002
Campylobacterota
Arcobacter butzleri 6V [QXNB]
410
326
-
Leu
TAG
[ENA]
¡û
>W2010306033
CABVQZ010000040
Campylobacterota
Arcobacter butzleri [CABVQZ]
171
87
-
Leu
TAG
[ENA]
¡û
>W2010306119
CABVRB010000036
Campylobacterota
Arcobacter butzleri [CABVRB]
171
87
-
Leu
TAG
[ENA]
¡û
>W2010306468
CABVRK010000010
Campylobacterota
Arcobacter butzleri [CABVRK]
171
87
-
Leu
TAG
[ENA]
¡û
>W2010306597
CABVRN010000002
Campylobacterota
Arcobacter butzleri [CABVRN]
171
87
-
Leu
TAG
[ENA]
¡û
>W2010306679
CABVRU010000107
Campylobacterota
Arcobacter butzleri [CABVRU]
6435
6519
+
Leu
TAG
[ENA]
¡û
>W2010306737
CABVSN010000008
Campylobacterota
Arcobacter butzleri [CABVSN]
86358
86442
+
Leu
TAG
[ENA]
¡û
>W2010641457
JABWGL010000033
Campylobacterota
Arcobacter butzleri RMIII [JABWGL]
713
629
-
Leu
TAG
[ENA]
¡û
>W2010641503
JABWGM010000032
Campylobacterota
Arcobacter butzleri RMI [JABWGM]
713
629
-
Leu
TAG
[ENA]
¡û
>W2010915814
MUXE01000021
Campylobacterota
Arcobacter sp. RW17-10 [MUXE]
573
489
-
Leu
TAG
[ENA]
¡û
>W2011048447
NREO01000013
Campylobacterota
Arcobacter suis CECT7833 [NREO]
593
509
-
Leu
TAG
[ENA]
¡û
>W2011144243
NXGH01000013
Campylobacterota
Arcobacter sp. LMG 9871 [NXGH]
21090
21174
+
Leu
TAG
[ENA]
¡û
>W2011144258
NXGI01000002
Campylobacterota
Arcobacter sp. LMG 9065 [NXGI]
239816
239900
+
Leu
TAG
[ENA]
¡û
>W2011145252
NXIH01000020
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
43956
44040
+
Leu
TAG
[ENA]
¡û
>W2011145320
NXIJ01000002
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
661
577
-
Leu
TAG
[ENA]
¡û
>W2011185875
PDJS01000001
Campylobacterota
Arcobacter trophiarum CECT 7650 [PDJS]
12667
12583
-
Leu
TAG
[ENA]
¡û
>W2011186210
PDJZ01000003
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
263610
263694
+
Leu
TAG
[ENA]
¡û
>W2011186345
PDKD01000001
Campylobacterota
Arcobacter trophiarum LMG 25534 [PDKD]
296521
296605
+
Leu
TAG
[ENA]
¡û
>W2011328956
QXNB01000002
Campylobacterota
Arcobacter butzleri 6V [QXNB]
410
326
-
Leu
TAG
[ENA]
¡û
>W2011966672
VBUF01000002
Campylobacterota
Arcobacter thereius 17CS1191_2 [VBUF]
214024
213940
-
Leu
TAG
[ENA]
¡û
>W2011966710
VBUG01000002
Campylobacterota
Arcobacter thereius 17CS1200_2 [VBUG]
241235
241319
+
Leu
TAG
[ENA]
¡û
>W2011966762
VBUH01000008
Campylobacterota
Arcobacter thereius DSM 23385 [VBUH]
68405
68489
+
Leu
TAG
[ENA]
¡û
>W2012241225
WCIX01000038
Campylobacterota
Arcobacter butzleri 16CS0817-2 [WCIX]
17868
17952
+
Leu
TAG
[ENA]
¡û
>C241034698
CP030944
Campylobacterota
Arcobacter aquimarinus W63 [CP030944]
210124
210208
+
Leu
TAG
-
¡û
>C241161460
CP053833
Campylobacterota
Arcobacter cloacae LMG 26153 [CP053833]
193610
193694
+
Leu
TAG
-
¡û
>C241161519
CP053835
Campylobacterota
Arcobacter defluvii LMG 25694 [CP053835]
253370
253454
+
Leu
TAG
-
¡û
>C241161720
CP053840
Campylobacterota
Arcobacter venerupis LMG 26156 [CP053840]
267286
267370
+
Leu
TAG
-
¡û
>C11100360
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
160879
160963
+
Leu
TAG
[Ensembl]
¡û
>W1510762853
JAIR01000005
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
118
34
-
Leu
TAG
[ENA]
¡û
>W1510762888
JAIS01000008
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
118
34
-
Leu
TAG
[ENA]
¡û
>W1510762923
JAIT01000008
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
116
32
-
Leu
TAG
[ENA]
¡û
>W1610584447
LCSK01000001
Campylobacterota
Arcobacter porcinus [LCSK]
264802
264718
-
Leu
TAG
[ENA]
¡û
>W1610584484
LCSL01000002
Campylobacterota
Arcobacter porcinus [LCSL]
59898
59814
-
Leu
TAG
[ENA]
¡û
>W1610584900
LCUH01000001
Campylobacterota
Aliarcobacter thereius [LCUH]
58691
58607
-
Leu
TAG
[ENA]
¡û
>W1610584950
LCUI01000001
Campylobacterota
Arcobacter porcinus [LCUI]
260654
260570
-
Leu
TAG
[ENA]
¡û
>W1610584992
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
288869
288785
-
Leu
TAG
[ENA]
¡û
>W1610585027
LCUK01000001
Campylobacterota
Aliarcobacter thereius [LCUK]
231018
231102
+
Leu
TAG
[ENA]
¡û
>W1610586373
LDIR01000002
Campylobacterota
Arcobacter porcinus [LDIR]
60280
60196
-
Leu
TAG
[ENA]
¡û
>W1610586410
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
230873
230957
+
Leu
TAG
[ENA]
¡û
>W1610699376
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
278881
278797
-
Leu
TAG
[ENA]
¡û
>W1610760580
LNKT01000071
Campylobacterota
Sulfurovum riftiae [LNKT]
57790
57706
-
Leu
TAG
[ENA]
¡û
>W1710703664
LCSK01000001
Campylobacterota
Arcobacter porcinus [LCSK]
264802
264718
-
Leu
TAG
[ENA]
¡û
>W1710703701
LCSL01000002
Campylobacterota
Arcobacter porcinus [LCSL]
59898
59814
-
Leu
TAG
[ENA]
¡û
>W1710704091
LCUH01000001
Campylobacterota
Aliarcobacter thereius [LCUH]
58691
58607
-
Leu
TAG
[ENA]
¡û
>W1710704141
LCUI01000001
Campylobacterota
Arcobacter porcinus [LCUI]
260654
260570
-
Leu
TAG
[ENA]
¡û
>W1710704183
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
288869
288785
-
Leu
TAG
[ENA]
¡û
>W1710704218
LCUK01000001
Campylobacterota
Aliarcobacter thereius [LCUK]
231018
231102
+
Leu
TAG
[ENA]
¡û
>W1710705503
LDIR01000002
Campylobacterota
Arcobacter porcinus [LDIR]
60280
60196
-
Leu
TAG
[ENA]
¡û
>W1710705540
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
230873
230957
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK