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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105457 (99 seq.)
>W1711460293
MJED01000003
Bacillota
Enterococcus gallinarum [MJED]
230107
230026
-
Leu
GAG
[ENA]
¡û
>W1712069793
NGMQ01000001
Bacillota
Enterococcus gallinarum [NGMQ]
1825140
1825221
+
Leu
GAG
[ENA]
¡û
>WENV180305431
OBJO01000087
[OBJO] human gut metagenome; human gut
31774
31693
-
Leu
GAG
[ENA]
¡û
>WENV180334920
OBLF01087829
[OBLF] metagenome; feces
100
181
+
Leu
GAG
[ENA]
¡û
>WENV180453287
OBXM01000007
[OBXM] human gut metagenome; faeces
179269
179188
-
Leu
GAG
[ENA]
¡û
>WENV180497033
OCAE01000107
[OCAE] human gut metagenome; faeces
2481
2400
-
Leu
GAG
[ENA]
¡û
>W141072103
ASKG01000131
Bacillota
Enterococcus sp. HSIEG1 [ASKG]
4863
4944
+
Leu
GAG
[ENA]
¡û
>WENV182951836
OKVV01000166
[OKVV] human gut metagenome; human gut
35248
35329
+
Leu
GAG
[ENA]
¡û
>WENV170539853
CWGP01000009
[CWGP] human gut metagenome; ENVO:feces
114452
114533
+
Leu
GAG
[ENA]
¡û
>WENV170541163
CXPK01000495
[CXPK] human gut metagenome genome assembly hA2, contig hA2_contig001157.; ENVO:feces
2487
2568
+
Leu
GAG
[ENA]
¡û
>WENV170541609
CXPQ01002496
[CXPQ] human gut metagenome genome assembly hB10, contig; ENVO:feces
62
143
+
Leu
GAG
[ENA]
¡û
>WENV170542232
CXPZ01000907
[CXPZ] human gut metagenome genome assembly hB5, contig hB5_contig003914.; ENVO:feces
211
292
+
Leu
GAG
[ENA]
¡û
>WENV170542494
CXQD01002695
[CXQD] human gut metagenome genome assembly hC10, contig; ENVO:feces
92
173
+
Leu
GAG
[ENA]
¡û
>WENV170542741
CXQH01000918
[CXQH] human gut metagenome genome assembly hC3, contig hC3_contig001864.; ENVO:feces
594
513
-
Leu
GAG
[ENA]
¡û
>WENV170544489
CXRK01000868
[CXRK] human gut metagenome genome assembly hE7, contig hE7_contig003222.; ENVO:feces
184
265
+
Leu
GAG
[ENA]
¡û
>WENV170545203
CXRX01000029
[CXRX] human gut metagenome genome assembly hG12, contig; ENVO:feces
6507
6426
-
Leu
GAG
[ENA]
¡û
>WENV170545775
CXSH01000836
[CXSH] human gut metagenome genome assembly hG8, contig hG8_contig003709.; ENVO:feces
154
235
+
Leu
GAG
[ENA]
¡û
>WENV170548554
CXUI01000262
[CXUI] Human gut metagenome genome assembly, contig: mD1_contig003205.; ENVO:feces
508
427
-
Leu
GAG
[ENA]
¡û
>C191110802
CP033740
Bacillota
Enterococcus sp. FDAARGOS_553 [CP033740]
2391855
2391774
-
Leu
GAG
-
¡û
>C191177814
CP040461
Bacillota
Enterococcus sp. M190262 [CP040461]
2389972
2389891
-
Leu
GAG
-
¡û
>W09115416
ACAJ01000016
Bacillota
Enterococcus gallinarum EG2 [ACAJ]
160246
160165
-
Leu
GAG
[ENA]
¡û
>W141734529
JNLR01000003
Bacillota
Enterococcus gallinarum [JNLR]
1684764
1684845
+
Leu
GAG
[ENA]
¡û
>W1910609893
LERZ01000011
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
67357
67438
+
Leu
GAG
[ENA]
¡û
>W1911238656
NSCY01000002
Bacillota
Enterococcus gallinarum 9402 [NSCY]
363553
363472
-
Leu
GAG
[ENA]
¡û
>W1911710298
QPQX01000007
Bacillota
Enterococcus sp. ARL09-542 [QPQX]
155201
155120
-
Leu
GAG
[ENA]
¡û
>W1810237757
PPHK01000002
Bacillota
Enterococcus gallinarum EG1 [PPHK]
390019
389938
-
Leu
GAG
[ENA]
¡û
>W1810907679
QVHY01000003
Bacillota
Enterococcus gallinarum OF05-6AC [QVHY]
7452
7533
+
Leu
GAG
[ENA]
¡û
>W2010149225
CAACXX010000001
Bacillota
Enterococcus saccharolyticus 3012STDY6252241 [CAACXX]
279177
279258
+
Leu
GAG
[ENA]
¡û
>W2010160257
CAAKOE010000089
Bacillota
Enterococcus gallinarum [CAAKOE]
114452
114533
+
Leu
GAG
[ENA]
¡û
>W2010165336
CABEIK010000001
Bacillota
Enterococcus gallinarum NCTC8736 [CABEIK]
1363251
1363170
-
Leu
GAG
[ENA]
¡û
>W2010195938
CABGIR010000002
Bacillota
Enterococcus gallinarum 4928STDY7071411 [CABGIR]
7495
7576
+
Leu
GAG
[ENA]
¡û
>W2010199660
CABGNS010000002
Bacillota
Enterococcus gallinarum 4928STDY7071418 [CABGNS]
7504
7585
+
Leu
GAG
[ENA]
¡û
>W2010203174
CABGTZ010000002
Bacillota
Enterococcus gallinarum 4928STDY7071615 [CABGTZ]
168748
168829
+
Leu
GAG
[ENA]
¡û
>W2010252623
CABIZP020000004
Bacillota
Enterococcus gallinarum [CABIZP]
119227
119308
+
Leu
GAG
[ENA]
¡û
>W2010446073
JAABOR010000002
Bacillota
Enterococcus gallinarum EGR748 [JAABOR]
355575
355494
-
Leu
GAG
[ENA]
¡û
>W2010608139
JABMDB010000007
Bacillota
Enterococcus gallinarum 57847415 [JABMDB]
156239
156158
-
Leu
GAG
[ENA]
¡û
>W2010644656
JABXHJ010000017
Bacillota
Enterococcus gallinarum EG6 [JABXHJ]
220072
219991
-
Leu
GAG
[ENA]
¡û
>W2010644689
JABXHK010000012
Bacillota
Enterococcus gallinarum EG5 [JABXHK]
116011
116092
+
Leu
GAG
[ENA]
¡û
>W2010644860
JABXJK010000064
Bacillota
Enterococcus gallinarum EG4 [JABXJK]
221011
220930
-
Leu
GAG
[ENA]
¡û
>W2010644902
JABXJL010000048
Bacillota
Enterococcus gallinarum EG3 [JABXJL]
376289
376208
-
Leu
GAG
[ENA]
¡û
>W2010644946
JABXJM010000045
Bacillota
Enterococcus gallinarum EG2 [JABXJM]
376289
376208
-
Leu
GAG
[ENA]
¡û
>W2010644989
JABXJN010000068
Bacillota
Enterococcus gallinarum EG1 [JABXJN]
376289
376208
-
Leu
GAG
[ENA]
¡û
>W2010667024
JACBYD010000032
Bacillota
Enterococcus gallinarum ENT [JACBYD]
15208
15127
-
Leu
GAG
[ENA]
¡û
>W2010770895
LERZ01000011
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
67357
67438
+
Leu
GAG
[ENA]
¡û
>W2011065629
NSCY01000002
Bacillota
Enterococcus gallinarum 9402 [NSCY]
363553
363472
-
Leu
GAG
[ENA]
¡û
>W2011284776
QPQX01000007
Bacillota
Enterococcus sp. ARL09-542 [QPQX]
155201
155120
-
Leu
GAG
[ENA]
¡û
>W2011342142
QYLR01000006
Bacillota
Enterococcus gallinarum N010.J-17 [QYLR]
155155
155074
-
Leu
GAG
[ENA]
¡û
>W2011342245
QYMQ01000002
Bacillota
Enterococcus gallinarum N018.G-3 [QYMQ]
359300
359219
-
Leu
GAG
[ENA]
¡û
>W2011343196
QYOK01000006
Bacillota
Enterococcus gallinarum T0181B.E-25 [QYOK]
155197
155116
-
Leu
GAG
[ENA]
¡û
>W2011452424
RKPB01000007
Bacillota
Enterococcus gallinarum P15 C A14 [RKPB]
86776
86695
-
Leu
GAG
[ENA]
¡û
>W2011452470
RKPF01000006
Bacillota
Enterococcus gallinarum P8 C A14 [RKPF]
114674
114755
+
Leu
GAG
[ENA]
¡û
>W2011452594
RKPO01000010
Bacillota
Enterococcus gallinarum P17 C A7 [RKPO]
86776
86695
-
Leu
GAG
[ENA]
¡û
>W2011452650
RKPQ01000010
Bacillota
Enterococcus gallinarum P16 C A7 [RKPQ]
86776
86695
-
Leu
GAG
[ENA]
¡û
>W2011452758
RKPX01000007
Bacillota
Enterococcus gallinarum P9 C A7 [RKPX]
86776
86695
-
Leu
GAG
[ENA]
¡û
>W2011671905
SPOW01000001
Bacillota
Enterococcus gallinarum C2 [SPOW]
345058
344977
-
Leu
GAG
[ENA]
¡û
>W2011822766
UFYU01000002
Bacillota
Enterococcus gallinarum NCTC12359 [UFYU]
1412942
1412861
-
Leu
GAG
[ENA]
¡û
>W2011822870
UFYW01000001
Bacillota
Enterococcus gallinarum NCTC12360 [UFYW]
1019106
1019187
+
Leu
GAG
[ENA]
¡û
>W2012124417
VRLO01000001
Bacillota
Enterococcus gallinarum S52016 [VRLO]
357790
357709
-
Leu
GAG
[ENA]
¡û
>W2012196430
VWOC01000005
Bacillota
Enterococcus gallinarum 25-4C [VWOC]
402077
401996
-
Leu
GAG
[ENA]
¡û
>W2012377750
WMHB01000001
Bacillota
Enterococcus gallinarum W17 [WMHB]
373414
373333
-
Leu
GAG
[ENA]
¡û
>W2012377812
WMHC01000003
Bacillota
Enterococcus gallinarum G12S [WMHC]
389656
389575
-
Leu
GAG
[ENA]
¡û
>W2012468509
WVTI01000001
Bacillota
Enterococcus gallinarum E3404 [WVTI]
114864
114945
+
Leu
GAG
[ENA]
¡û
>W2110121558
CAJSYR010000002
Bacillota
Enterococcus gallinarum [CAJSYR]
167845
167926
+
Leu
GAG
[ENA]
¡û
>W2110121917
CAJSZC010000003
Bacillota
Enterococcus gallinarum [CAJSZC]
345887
345806
-
Leu
GAG
[ENA]
¡û
>W2110158787
JAASJM010000007
Bacillota
Enterococcus gallinarum K55_2 [JAASJM]
36502
36583
+
Leu
GAG
[ENA]
¡û
>W2110223032
JACJKG010000012
Bacillota
Enterococcus gallinarum An774 [JACJKG]
40978
41059
+
Leu
GAG
[ENA]
¡û
>W2110316618
JADGKL010000032
Bacillota
Enterococcus gallinarum ENT.1 [JADGKL]
15208
15127
-
Leu
GAG
[ENA]
¡û
>W2110317601
JADGLH010000001
Bacillota
Enterococcus gallinarum 19428wB3_C2 [JADGLH]
345058
344977
-
Leu
GAG
[ENA]
¡û
>W2110354501
JADNKS010000001
Bacillota
Enterococcus gallinarum BSD2780061688_150302_F2 [JADNKS]
359083
359002
-
Leu
GAG
[ENA]
¡û
>W2110354956
JADNLH010000003
Bacillota
Enterococcus gallinarum BSD2780061688_150302_H8 [JADNLH]
357319
357238
-
Leu
GAG
[ENA]
¡û
>W2110355780
JADNMQ010000003
Bacillota
Enterococcus gallinarum 1001095H_141210_E7 [JADNMQ]
271738
271657
-
Leu
GAG
[ENA]
¡û
>W2110366802
JADPDT010000005
Bacillota
Enterococcus gallinarum BSD2780061687_150420_G3 [JADPDT]
190199
190118
-
Leu
GAG
[ENA]
¡û
>W2110369734
JADPHE010000002
Bacillota
Enterococcus gallinarum D52t1_170925_E8 [JADPHE]
345867
345786
-
Leu
GAG
[ENA]
¡û
>W2110404401
JAEANO010000001
Bacillota
Enterococcus gallinarum QAU17 [JAEANO]
922178
922097
-
Leu
GAG
[ENA]
¡û
>W2110462329
JAFBFD010000001
Bacillota
Enterococcus lemanii DSM 105069 [JAFBFD]
149970
149889
-
Leu
GAG
[ENA]
¡û
>W2110511075
JAFLJF010000001
Bacillota
Enterococcus gallinarum 74-1 [JAFLJF]
361445
361364
-
Leu
GAG
[ENA]
¡û
>W2110620651
JAHLOT010000007
Bacillota
Enterococcus gallinarum N13 [JAHLOT]
65357
65276
-
Leu
GAG
[ENA]
¡û
>C211083625
CP050485
Bacillota
Enterococcus gallinarum EGM181 [CP050485]
1643230
1643149
-
Leu
GAG
-
¡û
>W2110728797
JAJCLL010000007
Bacillota
Enterococcus gallinarum DFI.7.69 [JAJCLL]
121212
121131
-
Leu
GAG
[ENA]
¡û
>C231061435
CP050816
Bacillota
Enterococcus gallinarum EG81 [CP050816]
1887295
1887214
-
Leu
GAG
-
¡û
>C231161462
CP078505
Bacillota
Enterococcus gallinarum fecal_iso1 [CP078505]
1452073
1451992
-
Leu
GAG
-
¡û
>C231292465
CP091204
Bacillota
Enterococcus gallinarum 674 [CP091204]
1363951
1363870
-
Leu
GAG
-
¡û
>W2110768407
SIYA01000022
Bacillota
Enterococcus gallinarum 2CIL2 [SIYA]
154975
154894
-
Leu
GAG
[ENA]
¡û
>W2110768409
SIYE01000002
Bacillota
Enterococcus gallinarum 2SIJ202 [SIYE]
296166
296085
-
Leu
GAG
[ENA]
¡û
>W2110768501
SIYL01000011
Bacillota
Enterococcus gallinarum 2UPA1 [SIYL]
354564
354483
-
Leu
GAG
[ENA]
¡û
>W2110768653
SIYT01000009
Bacillota
Enterococcus gallinarum 3CPD4 [SIYT]
244923
244842
-
Leu
GAG
[ENA]
¡û
>W2110768706
SIYV01000020
Bacillota
Enterococcus gallinarum 3CPL1 [SIYV]
55088
55007
-
Leu
GAG
[ENA]
¡û
>W2110768714
SIYW01000004
Bacillota
Enterococcus gallinarum 3CPL4 [SIYW]
114687
114768
+
Leu
GAG
[ENA]
¡û
>W2110769122
SJOK01000003
Bacillota
Enterococcus gallinarum 2SIJ201 [SJOK]
296166
296085
-
Leu
GAG
[ENA]
¡û
>W2110777138
VRYP01000008
Bacillota
Enterococcus gallinarum 6-8 [VRYP]
157228
157309
+
Leu
GAG
[ENA]
¡û
>C241107448
CP046307
Bacillota
Enterococcus gallinarum FDAARGOS_728 [CP046307]
511696
511615
-
Leu
GAG
-
¡û
>W2110801034
WSZL01000004
Bacillota
Enterococcus gallinarum EG81 [WSZL]
37636
37717
+
Leu
GAG
[ENA]
¡û
>W1511187723
JMGP01000002
Bacillota
Enterococcus gallinarum A6981 [JMGP]
403247
403166
-
Leu
GAG
[ENA]
¡û
>W1610066938
BCQE01000011
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
20946
21027
+
Leu
GAG
[ENA]
¡û
>W121001868
ADLY01000039
Bacillota
Enterococcus saccharolyticus 30_1 [ADLY]
267981
267900
-
Leu
GAG
[ENA]
¡û
>W1610620520
LHOX01000018
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
364374
364293
-
Leu
GAG
[ENA]
¡û
>W1710064369
BCQE01000011
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
20946
21027
+
Leu
GAG
[ENA]
¡û
>W1710659407
JXKP01000023
Bacillota
Enterococcus gallinarum [JXKP]
20966
21047
+
Leu
GAG
[ENA]
¡û
>W1710748214
LHOX01000018
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
364374
364293
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK