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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105499 (65 seq.)
>W1710989786
LPWD01000160
Alphaproteobacteria
Methyloceanibacter marginalis [LPWD]
4466
4382
-
Leu
TAG
[ENA]
¡û
>W1710989902
LPWG01000003
Alphaproteobacteria
Methyloceanibacter methanicus [LPWG]
29720
29804
+
Leu
TAG
[ENA]
¡û
>W131181115
ARNQ01000040
Alphaproteobacteria
Pannonibacter phragmitetus DSM 14782 [ARNQ]
62566
62482
-
Leu
TAG
[ENA]
¡û
>C000483
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
1017347
1017428
+
Leu
TAG
[Ensembl]
¡û
>WENV180295967
OBIZ01496887
[OBIZ] soil metagenome; soil
176
92
-
Leu
TAG
[ENA]
¡û
>WENV180352153
OBLQ010181726
[OBLQ] soil metagenome; soil
126
210
+
Leu
TAG
[ENA]
¡û
>WENV181294238
OFHG01111396
[OFHG] soil metagenome; Clay
66
150
+
Leu
TAG
[ENA]
¡û
>WENV181294751
OFHH01036450
[OFHH] soil metagenome; Clay
401
485
+
Leu
TAG
[ENA]
¡û
>WENV181315072
OFJM01000849
[OFJM] marine metagenome; sea ice
361
445
+
Leu
TAG
[ENA]
¡û
>WENV182553856
OJCR01042293
[OJCR] seawater metagenome; Sea water
212
296
+
Leu
TAG
[ENA]
¡û
>WENV182580218
OJGU01018648
[OJGU] seawater metagenome; Sea water
759
843
+
Leu
TAG
[ENA]
¡û
>W141277518
JAEQ01000017
Alphaproteobacteria
Chelativorans sp. J32 [JAEQ]
67691
67607
-
Leu
TAG
[ENA]
¡û
>WENV183056870
OLHJ01044005
[OLHJ] seawater metagenome; Sea water
88
4
-
Leu
TAG
[ENA]
¡û
>WENV183615148
OOEA01079103
[OOEA] marine metagenome; sea ice
97
13
-
Leu
TAG
[ENA]
¡û
>WENV183631100
OOGU01030603
[OOGU] marine metagenome; sea ice
402
486
+
Leu
TAG
[ENA]
¡û
>WENV183681002
ORMF010249897
[ORMF] groundwater metagenome; groundwater
1607
1691
+
Leu
TAG
[ENA]
¡û
>WENV170195152
CEPJ01105553
[CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
188
104
-
Leu
TAG
[ENA]
¡û
>WENV170225806
CEQE01149277
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
92
176
+
Leu
TAG
[ENA]
¡û
>WENV170505250
CEVW01042696
[CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
777
693
-
Leu
TAG
[ENA]
¡û
>WENV170648344
JRHI01000188
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
10291
10375
+
Leu
TAG
[ENA]
¡û
>WENV170668074
LADL02000804
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
7283
7199
-
Leu
TAG
[ENA]
¡û
>WENV170772422
LXNI01033158
[LXNI] sponge metagenome; marine sponge reef
946
1030
+
Leu
TAG
[ENA]
¡û
>W141462238
JFHO01000030
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
39349
39268
-
Leu
TAG
[ENA]
¡û
>WENV170833163
MDSZ01074882
[MDSZ] marine metagenome; seawater
4593
4677
+
Leu
TAG
[ENA]
¡û
>WENV170900125
MDTD01149573
[MDTD] marine metagenome; seawater
3794
3878
+
Leu
TAG
[ENA]
¡û
>WENV170957682
MKWU01000117
[MKWU] sponge metagenome;
27053
27137
+
Leu
TAG
[ENA]
¡û
>C191087701
CP032312
Alphaproteobacteria
Pannonibacter phragmitetus BB [CP032312]
2828225
2828141
-
Leu
TAG
-
¡û
>W141561192
JHYG01000005
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
226327
226243
-
Leu
TAG
[ENA]
¡û
>W09105142
AAOO01000033
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
1729
1648
-
Leu
TAG
[ENA]
¡û
>W1910501483
FYAN01000026
Alphaproteobacteria
Pannonibacter sp. I15F10I1 [FYAN]
99050
99134
+
Leu
TAG
[ENA]
¡û
>W1910501539
FYAO01000027
Alphaproteobacteria
Pannonibacter sp. P2PFMT1 [FYAO]
1415441
1415357
-
Leu
TAG
[ENA]
¡û
>W1910501581
FYAP01000031
Alphaproteobacteria
Pannonibacter sp. CS1GBFMT1 [FYAP]
100949
101033
+
Leu
TAG
[ENA]
¡û
>W1910501621
FYAQ01000026
Alphaproteobacteria
Pannonibacter sp. TSB10GB1 [FYAQ]
100949
101033
+
Leu
TAG
[ENA]
¡û
>W1911767352
QXER01000004
Alphaproteobacteria
Pannonibacter phragmitetus 00954 [QXER]
779008
778924
-
Leu
TAG
[ENA]
¡û
>W1911767394
QXES01000003
Alphaproteobacteria
Pannonibacter phragmitetus H1-4 [QXES]
1801686
1801602
-
Leu
TAG
[ENA]
¡û
>W1810324333
PUDR01000006
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
196987
196903
-
Leu
TAG
[ENA]
¡û
>W2010324616
CACTIA010000005
Alphaproteobacteria
Acidiphilium sp. C61 [CACTIA]
197103
197022
-
Leu
TAG
[ENA]
¡û
>W2010421215
FYAN01000026
Alphaproteobacteria
Pannonibacter sp. I15F10I1 [FYAN]
99050
99134
+
Leu
TAG
[ENA]
¡û
>W2010421271
FYAO01000027
Alphaproteobacteria
Pannonibacter sp. P2PFMT1 [FYAO]
1415441
1415357
-
Leu
TAG
[ENA]
¡û
>W2010421313
FYAP01000031
Alphaproteobacteria
Pannonibacter sp. CS1GBFMT1 [FYAP]
100949
101033
+
Leu
TAG
[ENA]
¡û
>W2010421353
FYAQ01000026
Alphaproteobacteria
Pannonibacter sp. TSB10GB1 [FYAQ]
100949
101033
+
Leu
TAG
[ENA]
¡û
>W2010442140
JAABLP010000001
Alphaproteobacteria
Pannonibacter sp. XCT-34 [JAABLP]
338088
338004
-
Leu
TAG
[ENA]
¡û
>W2010442203
JAABLQ010000001
Alphaproteobacteria
Pannonibacter sp. XCT-53 [JAABLQ]
1543969
1543885
-
Leu
TAG
[ENA]
¡û
>W2011325090
QXER01000004
Alphaproteobacteria
Pannonibacter phragmitetus 00954 [QXER]
779008
778924
-
Leu
TAG
[ENA]
¡û
>W2011325132
QXES01000003
Alphaproteobacteria
Pannonibacter phragmitetus H1-4 [QXES]
1801686
1801602
-
Leu
TAG
[ENA]
¡û
>W2011626219
SLZN01000001
Alphaproteobacteria
Acidomonas methanolica DSM 5432 [SLZN]
36310
36394
+
Leu
TAG
[ENA]
¡û
>W2011627414
SMAK01000004
Alphaproteobacteria
Tepidamorphus gemmatus DSM 19345 [SMAK]
44331
44247
-
Leu
TAG
[ENA]
¡û
>W2011834464
UGSK01000001
Alphaproteobacteria
Pannonibacter phragmitetus NCTC13350 [UGSK]
2585901
2585817
-
Leu
TAG
[ENA]
¡û
>W2110111805
CAJHNI010000005
Alphaproteobacteria
Acidiphilium sp. C61 [CAJHNI]
197103
197022
-
Leu
TAG
[ENA]
¡û
>W2110121013
CAJQZK010000001
Alphaproteobacteria
Acidocella sp. C78 [CAJQZK]
333782
333863
+
Leu
TAG
[ENA]
¡û
>W2110121058
CAJQZK010000060
Alphaproteobacteria
Acidocella sp. C78 [CAJQZK]
333782
333863
+
Leu
TAG
[ENA]
¡û
>W2110276052
JACVVW010000001
Alphaproteobacteria
Acidiphilium multivorum LMS [JACVVW]
29917
29998
+
Leu
TAG
[ENA]
¡û
>W2110734959
JAJDJU010000002
Alphaproteobacteria
Acidocella sp. KAb 2-4 [JAJDJU]
136005
136089
+
Leu
TAG
[ENA]
¡û
>C231047245
CP041716
Alphaproteobacteria
Acidiphilium multivorum JZ-6 [CP041716]
3602079
3602160
+
Leu
TAG
-
¡û
>C231627756
CP120361
Alphaproteobacteria
Chelativorans sp. AA-79 [CP120361]
2948814
2948730
-
Leu
TAG
-
¡û
>C11100976
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
1105588
1105507
-
Leu
TAG
[Ensembl]
¡û
>W1510741243
CYHE01000011
Alphaproteobacteria
Pannonibacter indicus DSM 23407 [CYHE]
9100
9016
-
Leu
TAG
[ENA]
¡û
>W1511705854
LGSQ01000007
Alphaproteobacteria
Pannonibacter phragmitetus CGMCC9175 [LGSQ]
74149
74233
+
Leu
TAG
[ENA]
¡û
>W11170624
AFPR01000111
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
31183
31102
-
Leu
TAG
[ENA]
¡û
>C161050776
CP013068
Alphaproteobacteria
Pannonibacter phragmitetus 31801 [CP013068]
3806584
3806668
+
Leu
TAG
[Ensembl]
¡û
>WENV063689
AACY023513995
Marine microbial communities from Global Ocean Sampling (GOS)
346
430
+
Leu
TAG
[ENA]
>W1610040945
BANA01000012
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
55992
55911
-
Leu
TAG
[ENA]
¡û
>W1610632338
LIPT01000011
Alphaproteobacteria
Pannonibacter indicus [LIPT]
9100
9016
-
Leu
TAG
[ENA]
¡û
>W1710038143
BANA01000012
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
55992
55911
-
Leu
TAG
[ENA]
¡û
>W1710766724
LIPT01000011
Alphaproteobacteria
Pannonibacter indicus [LIPT]
9100
9016
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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