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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105632 (68 seq.)
>WENV180146388
OAUF01000255
[OAUF] human gut metagenome; faeces
33960
33876
-
Leu
TAG
[ENA]
¡û
>WENV180153826
OAUS01001640
[OAUS] human gut metagenome; faeces
5802
5718
-
Leu
TAG
[ENA]
¡û
>WENV180170509
OAVV01000414
[OAVV] human gut metagenome; faeces
27620
27536
-
Leu
TAG
[ENA]
¡û
>WENV180200687
OBAF01000027
[OBAF] human gut metagenome; human gut
50844
50760
-
Leu
TAG
[ENA]
¡û
>WENV180215190
OBAQ01000255
[OBAQ] human gut metagenome; human gut
50912
50828
-
Leu
TAG
[ENA]
¡û
>WENV180216738
OBAR01000107
[OBAR] human gut metagenome; human gut
50844
50760
-
Leu
TAG
[ENA]
¡û
>WENV180237557
OBCY01008082
[OBCY] human gut metagenome; human gut
1408
1492
+
Leu
TAG
[ENA]
¡û
>WENV180434306
OBWL01000063
[OBWL] human gut metagenome; faeces
123742
123826
+
Leu
TAG
[ENA]
¡û
>WENV180453593
OBXM01000284
[OBXM] human gut metagenome; faeces
41713
41797
+
Leu
TAG
[ENA]
¡û
>WENV180529366
OCHK01000012
[OCHK] human gut metagenome; human gut
50844
50760
-
Leu
TAG
[ENA]
¡û
>WENV180608752
OCPV01000013
[OCPV] human gut metagenome; human gut
50844
50760
-
Leu
TAG
[ENA]
¡û
>WENV180616106
OCQA01000002
[OCQA] human gut metagenome; human gut
256680
256596
-
Leu
TAG
[ENA]
¡û
>WENV180649570
OCSK01076891
[OCSK] human gut metagenome; human gut
173
89
-
Leu
TAG
[ENA]
¡û
>WENV180701238
ODEE01000005
[ODEE] human metagenome; G_DNA_Stool
164566
164650
+
Leu
TAG
[ENA]
¡û
>WENV180730840
ODGV01025476
[ODGV] human metagenome; G_DNA_Stool
690
606
-
Leu
TAG
[ENA]
¡û
>WENV180742656
ODHH01013098
[ODHH] human metagenome; G_DNA_Stool
1690
1606
-
Leu
TAG
[ENA]
¡û
>WENV180744444
ODHJ01038038
[ODHJ] human metagenome; G_DNA_Stool
176
260
+
Leu
TAG
[ENA]
¡û
>WENV180957104
ODUK01011434
[ODUK] human metagenome; G_DNA_Stool
2278
2194
-
Leu
TAG
[ENA]
¡û
>WENV181116822
OEFH01000001
[OEFH] human metagenome; G_DNA_Stool
559358
559274
-
Leu
TAG
[ENA]
¡û
>WENV181330714
OFLZ01000016
[OFLZ] human gut metagenome; human gut
47699
47615
-
Leu
TAG
[ENA]
¡û
>WENV181344018
OFMJ01043416
[OFMJ] human gut metagenome; human gut
441
525
+
Leu
TAG
[ENA]
¡û
>WENV181545238
OGIG01021828
[OGIG] metagenome; Human gut stool
286
370
+
Leu
TAG
[ENA]
¡û
>WENV181729617
OGQB01012578
[OGQB] human gut metagenome; faeces
1544
1628
+
Leu
TAG
[ENA]
¡û
>WENV181741716
OGQK01001355
[OGQK] human gut metagenome; faeces
1866
1782
-
Leu
TAG
[ENA]
¡û
>WENV181876640
OGXD01000012
[OGXD] human gut metagenome; faeces
34628
34712
+
Leu
TAG
[ENA]
¡û
>WENV181878709
OGXE01007386
[OGXE] human gut metagenome; faeces
601
517
-
Leu
TAG
[ENA]
¡û
>WENV181914113
OGYF01000009
[OGYF] human gut metagenome; faeces
7924
8008
+
Leu
TAG
[ENA]
¡û
>WENV181992696
OHAR01000830
[OHAR] human gut metagenome; feces
7326
7242
-
Leu
TAG
[ENA]
¡û
>WENV182054631
OHEK01004162
[OHEK] human gut metagenome; feces
1639
1555
-
Leu
TAG
[ENA]
¡û
>WENV182091164
OHHD01006767
[OHHD] human gut metagenome; feces
1038
954
-
Leu
TAG
[ENA]
¡û
>WENV182131271
OHKC01018875
[OHKC] human gut metagenome; feces
286
370
+
Leu
TAG
[ENA]
¡û
>WENV182216477
OHQN01002341
[OHQN] human gut metagenome; feces
2170
2086
-
Leu
TAG
[ENA]
¡û
>WENV182238435
OHRZ01001379
[OHRZ] human gut metagenome; feces
5679
5763
+
Leu
TAG
[ENA]
¡û
>WENV182250359
OHSS01002517
[OHSS] human gut metagenome; feces
2790
2706
-
Leu
TAG
[ENA]
¡û
>WENV182388546
OIEC01000658
[OIEC] human gut metagenome; human gut
5170
5254
+
Leu
TAG
[ENA]
¡û
>WENV182948567
OKVP01000353
[OKVP] human gut metagenome; human gut
1852
1936
+
Leu
TAG
[ENA]
¡û
>WENV183046380
OLGF01000030
[OLGF] human gut metagenome; faeces
124258
124174
-
Leu
TAG
[ENA]
¡û
>WENV183127114
OLNZ01000001
[OLNZ] human gut metagenome; faeces
281890
281806
-
Leu
TAG
[ENA]
¡û
>WENV183232722
OLQV01000003
[OLQV] human gut metagenome; faeces
229182
229266
+
Leu
TAG
[ENA]
¡û
>WENV183275464
OLRZ01000002
[OLRZ] human gut metagenome; faeces
270587
270671
+
Leu
TAG
[ENA]
¡û
>WENV183312036
OLVO01038039
[OLVO] human gut metagenome; faeces
176
260
+
Leu
TAG
[ENA]
¡û
>WENV183331762
OLWC01001554
[OLWC] human gut metagenome; feces
2026
2110
+
Leu
TAG
[ENA]
¡û
>WENV183347616
OLWT01017713
[OLWT] human gut metagenome; feces
540
624
+
Leu
TAG
[ENA]
¡û
>WENV183352295
OLWZ01011849
[OLWZ] human gut metagenome; feces
999
915
-
Leu
TAG
[ENA]
¡û
>WENV183362358
OLXK01005889
[OLXK] human gut metagenome; feces
4542
4458
-
Leu
TAG
[ENA]
¡û
>WENV183365288
OLXN01004088
[OLXN] human gut metagenome; feces
4652
4568
-
Leu
TAG
[ENA]
¡û
>WENV183368199
OLXR01001018
[OLXR] human gut metagenome; feces
3251
3167
-
Leu
TAG
[ENA]
¡û
>WENV183368918
OLXS01000308
[OLXS] human gut metagenome; feces
18054
17970
-
Leu
TAG
[ENA]
¡û
>WENV183370059
OLXT01004871
[OLXT] human gut metagenome; feces
2163
2079
-
Leu
TAG
[ENA]
¡û
>WENV183481091
OMFJ01037019
[OMFJ] human gut metagenome; feces
140
56
-
Leu
TAG
[ENA]
¡û
>WENV183493368
OMGI01045607
[OMGI] human gut metagenome; human gut
154
238
+
Leu
TAG
[ENA]
¡û
>WENV183561961
OOBV01012870
[OOBV] human gut metagenome; human gut
1275
1191
-
Leu
TAG
[ENA]
¡û
>WENV183592165
OOCZ01000002
[OOCZ] human gut metagenome; human gut
81382
81466
+
Leu
TAG
[ENA]
¡û
>WENV183764761
PPYE01320897
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
11357
11273
-
Leu
TAG
[ENA]
¡û
>WENV183771642
PPYF01000002
[PPYF] human gut metagenome; stool from patient with Crohn's disease
13648
13564
-
Leu
TAG
[ENA]
¡û
>WENV183780370
PPYF01171653
[PPYF] human gut metagenome; stool from patient with Crohn's disease
223664
223748
+
Leu
TAG
[ENA]
¡û
>WENV170085540
CEAB01053545
[CEAB] gut metagenome; human stools
7
91
+
Leu
TAG
[ENA]
¡û
>W1810169853
PJKJ01000001
Verrucomicrobiota
Akkermansia muciniphila GP08 [PJKJ]
1005574
1005658
+
Leu
TAG
[ENA]
¡û
>W1810169942
PJKK01000015
Verrucomicrobiota
Akkermansia muciniphila GP07 [PJKK]
448528
448444
-
Leu
TAG
[ENA]
¡û
>W2010285693
CABMLH010000015
Verrucomicrobiota
Akkermansia muciniphila [CABMLH]
448528
448444
-
Leu
TAG
[ENA]
¡û
>C211299273
CP072019
Verrucomicrobiota
Akkermansia muciniphila Akk2680 [CP072019]
2120273
2120189
-
Leu
TAG
-
¡û
>C211299379
CP072021
Verrucomicrobiota
Akkermansia muciniphila Akk2196 [CP072021]
2079888
2079804
-
Leu
TAG
-
¡û
>C211299432
CP072022
Verrucomicrobiota
Akkermansia muciniphila Akk2190 [CP072022]
2079913
2079829
-
Leu
TAG
-
¡û
>C211299593
CP072025
Verrucomicrobiota
Akkermansia muciniphila Akk2000 [CP072025]
2079914
2079830
-
Leu
TAG
-
¡û
>C211300179
CP072036
Verrucomicrobiota
Akkermansia muciniphila Akk1573 [CP072036]
2077381
2077297
-
Leu
TAG
-
¡û
>C211300284
CP072038
Verrucomicrobiota
Akkermansia muciniphila Akk1476 [CP072038]
2079888
2079804
-
Leu
TAG
-
¡û
>C211300602
CP072044
Verrucomicrobiota
Akkermansia muciniphila Akk0580 [CP072044]
2078128
2078044
-
Leu
TAG
-
¡û
>W2310027544
BSQU01000001
Verrucomicrobiota
Akkermansia sp. NBRC 115031 [BSQU]
11234
11150
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK