This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105635 (81 seq.)
>W1710876572
LMPI01000023
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
57417
57502
+
Tyr
GTA
[ENA]
¡û
>W1710876642
LMPK01000015
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
170547
170462
-
Tyr
GTA
[ENA]
¡û
>W1711185727
LWNQ01000008
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
8283
8365
+
Tyr
GTA
[ENA]
¡û
>W1711186317
LWOD01000004
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
10442
10360
-
Tyr
GTA
[ENA]
¡û
>W1711190859
LWSF01000023
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
128472
128390
-
Tyr
GTA
[ENA]
¡û
>W1711386920
MEGA01000001
Actinomycetota
Microbacterium sp. SCN 71-21 [MEGA]
52682
52767
+
Tyr
GTA
[ENA]
¡û
>W1711502200
MKSL01000012
Actinomycetota
Microbacterium sp. 71-23 [MKSL]
191273
191358
+
Tyr
GTA
[ENA]
¡û
>W131181771
ARPK01000004
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
1781099
1781181
+
Tyr
GTA
[ENA]
¡û
>W131186169
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
2871390
2871308
-
Tyr
GTA
[ENA]
¡û
>W131202787
ASXG01000077
Actinomycetota
Amycolatopsis orientalis DSM 43388 [ASXG]
62115
62033
-
Tyr
GTA
[ENA]
¡û
>W131202826
ASXH01000017
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
74137
74219
+
Tyr
GTA
[ENA]
¡û
>W131206292
ATFO01000008
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
721230
721148
-
Tyr
GTA
[ENA]
¡û
>W131219658
ATYT01000001
Actinomycetota
Thermocrispum municipale DSM 44069 [ATYT]
775269
775351
+
Tyr
GTA
[ENA]
¡û
>WENV180312712
OBJZ01000057
[OBJZ] human gut metagenome; fecal sample
8319
8401
+
Tyr
GTA
[ENA]
¡û
>WENV180505136
OCAO01016639
[OCAO] human gut metagenome; faeces
112
30
-
Tyr
GTA
[ENA]
¡û
>WENV180554425
OCJN01000832
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
2380
2462
+
Tyr
GTA
[ENA]
¡û
>WENV182812781
OJXV01000011
[OJXV] human gut metagenome; human gut
8078
8160
+
Tyr
GTA
[ENA]
¡û
>WENV182819751
OKAF01006140
[OKAF] human gut metagenome; human gut
425
343
-
Tyr
GTA
[ENA]
¡û
>WENV182825505
OKCK01000162
[OKCK] human gut metagenome; human gut
8110
8192
+
Tyr
GTA
[ENA]
¡û
>WENV182831701
OKEG01000203
[OKEG] human gut metagenome; human gut
10420
10338
-
Tyr
GTA
[ENA]
¡û
>WENV182839083
OKGZ01003903
[OKGZ] human gut metagenome; human gut
328
246
-
Tyr
GTA
[ENA]
¡û
>WENV182845646
OKJE01000302
[OKJE] human gut metagenome; human gut
4409
4327
-
Tyr
GTA
[ENA]
¡û
>WENV182849741
OKKT01002442
[OKKT] human gut metagenome; human gut
428
346
-
Tyr
GTA
[ENA]
¡û
>WENV182855192
OKMY01000254
[OKMY] human gut metagenome; human gut
6834
6752
-
Tyr
GTA
[ENA]
¡û
>WENV183087973
OLJQ01001377
[OLJQ] human gut metagenome; human gut
1035
1117
+
Tyr
GTA
[ENA]
¡û
>W141400437
JDRS01000006
Actinomycetota
Dermabacter hominis 1368 [JDRS]
164416
164334
-
Tyr
GTA
[ENA]
¡û
>WENV170840566
MDSZ01206852
[MDSZ] marine metagenome; seawater
112209
112124
-
Tyr
GTA
[ENA]
¡û
>WENV170977050
MTKZ01016280
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4930
4846
-
Tyr
GTA
[ENA]
¡û
>W09120713
ACEV01000005
Actinomycetota
Streptomyces sp. AA4 [ACEV]
1962
1876
-
Tyr
GTA
[ENA]
¡û
>C181002047
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
1575391
1575473
+
Tyr
GTA
-
¡û
>C181107816
CP024894
Actinomycetota
Amycolatopsis sp. AA4 [CP024894]
326673
326587
-
Tyr
GTA
-
¡û
>W141758972
JNYZ01000012
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
361201
361117
-
Tyr
GTA
[ENA]
¡û
>W141773728
JOIQ01000018
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
592247
592329
+
Tyr
GTA
[ENA]
¡û
>W1910183731
BJNZ01000004
Actinomycetota
Cellulosimicrobium cellulans NBRC 15516 [BJNZ]
24983
25066
+
Tyr
GTA
[ENA]
¡û
>W1910321376
FSEE01000020
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
150144
150062
-
Tyr
GTA
[ENA]
¡û
>W1911783426
QXTG01000003
Actinomycetota
Amnibacterium sp. DD4a [QXTG]
4399
4481
+
Tyr
GTA
[ENA]
¡û
>W1911814707
QZFV01000086
Actinomycetota
Amycolatopsis sp. YIM PH 21725 [QZFV]
55971
55889
-
Tyr
GTA
[ENA]
¡û
>W1810058362
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
1613799
1613881
+
Tyr
GTA
[ENA]
¡û
>W1810173272
PJMY01000003
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
2126446
2126528
+
Tyr
GTA
[ENA]
¡û
>W1810187286
PKHM01000001
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
8476
8558
+
Tyr
GTA
[ENA]
¡û
>W1810254972
PQIA01000025
Actinomycetota
Amycolatopsis circi DSM 45561 [PQIA]
34795
34877
+
Tyr
GTA
[ENA]
¡û
>W1810477848
QAPD01000039
Actinomycetota
Sphaerisporangium cinnabarinum ATCC 31213 [QAPD]
16912
16995
+
Tyr
GTA
[ENA]
¡û
>W1810884943
QUMZ01000001
Actinomycetota
Cellulosimicrobium cellulans ZKA48 [QUMZ]
1405742
1405825
+
Tyr
GTA
[ENA]
¡û
>W2010447244
JAACJC010000001
Actinomycetota
Cellulosimicrobium sp. SL-1 [JAACJC]
27443
27526
+
Tyr
GTA
[ENA]
¡û
>W2010468080
JAAGNC010000135
Actinomycetota
Amycolatopsis rubida SID8386 [JAAGNC]
2391
2473
+
Tyr
GTA
[ENA]
¡û
>W2010693814
JACGZW010000003
Actinomycetota
Amycolatopsis sp. DR6-1 [JACGZW]
57220
57302
+
Tyr
GTA
[ENA]
¡û
>W2010709548
JACHMG010000001
Actinomycetota
Amycolatopsis jiangsuensis DSM 45859 [JACHMG]
4462854
4462938
+
Tyr
GTA
[ENA]
¡û
>W2010739629
JACJHR010000012
Actinomycetota
Amycolatopsis echigonensis JCM 21831 [JACJHR]
63006
62924
-
Tyr
GTA
[ENA]
¡û
>W2011333112
QXTG01000003
Actinomycetota
Amnibacterium sp. DD4a [QXTG]
4399
4481
+
Tyr
GTA
[ENA]
¡û
>W2011347955
QZFV01000086
Actinomycetota
Amycolatopsis sp. YIM PH 21725 [QZFV]
55971
55889
-
Tyr
GTA
[ENA]
¡û
>W2011376382
RBLW01000001
Actinomycetota
Dermabacter sp. HSID17554 [RBLW]
668406
668324
-
Tyr
GTA
[ENA]
¡û
>W2011539867
SCOB01000012
Actinomycetota
Microbacterium sp. 4NA327F11 [SCOB]
7678
7593
-
Tyr
GTA
[ENA]
¡û
>W2011547838
SDLS01000009
Actinomycetota
Amycolatopsis sp. CFH S0740 [SDLS]
183695
183613
-
Tyr
GTA
[ENA]
¡û
>W2011547919
SDLT01000036
Actinomycetota
Amycolatopsis sp. CFH S0261 [SDLT]
43234
43152
-
Tyr
GTA
[ENA]
¡û
>W2011547954
SDLU01000009
Actinomycetota
Amycolatopsis sp. CFH S0078 [SDLU]
184100
184018
-
Tyr
GTA
[ENA]
¡û
>W2011600087
SIRP01000001
Actinomycetota
Isoptericola sp. BMS4 [SIRP]
1298201
1298284
+
Tyr
GTA
[ENA]
¡û
>W2011653513
SOAM01000001
Actinomycetota
Amnibacterium kyonggiense DSM 24782 [SOAM]
149090
149008
-
Tyr
GTA
[ENA]
¡û
>W2012140505
VTHK01000003
Actinomycetota
Amycolatopsis sp. EGI 650086 [VTHK]
333006
332923
-
Tyr
GTA
[ENA]
¡û
>W2012210446
VYUY01000009
Actinomycetota
Microbacterium sp. L-033 [VYUY]
88807
88723
-
Tyr
GTA
[ENA]
¡û
>W2012471450
WWFW01000135
Actinomycetota
Amycolatopsis rubida SID8386 [WWFW]
2391
2473
+
Tyr
GTA
[ENA]
¡û
>W2110141886
JAAGRY010000061
Actinomycetota
Microbacterium sp. 2C [JAAGRY]
1198
1115
-
Tyr
GTA
[ENA]
¡û
>W2110692829
JAIQDX010000005
Actinomycetota
Microbacterium sp. cx-55 [JAIQDX]
175109
175193
+
Tyr
GTA
[ENA]
¡û
>C201145400
CP044231
Actinomycetota
Microbacterium sp. ST-M6 [CP044231]
632545
632629
+
Tyr
GTA
-
¡û
>C211262695
CP069526
Actinomycetota
Amycolatopsis sp. FDAARGOS 1241 FDAARGOS_1241 [CP069526]
8425358
8425276
-
Tyr
GTA
-
¡û
>C211315150
CP072876
Actinomycetota
Microbacterium sp. NIBRBAC000506063 [CP072876]
576361
576279
-
Tyr
GTA
-
¡û
>C231252226
CP088261
Actinomycetota
Microbacterium sp. cx-55 [CP088261]
2681540
2681456
-
Tyr
GTA
-
¡û
>C231297935
CP091381
Actinomycetota
Amycolatopsis sp. FU40 [CP091381]
8294971
8294889
-
Tyr
GTA
-
¡û
>C241025555
CP023482
Actinomycetota
Dermabacter jinjuensis 32T [CP023482]
733868
733950
+
Tyr
GTA
-
¡û
>C241086759
CP044108
Actinomycetota
Dermabacter vaginalis FDAARGOS_640 [CP044108]
856271
856353
+
Tyr
GTA
-
¡û
>C241370926
CP142149
Actinomycetota
Amycolatopsis rhabdoformis NCIMB 14900 [CP142149]
8740406
8740488
+
Tyr
GTA
-
¡û
>W1511528886
JYIY01000075
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
57313
57398
+
Tyr
GTA
[ENA]
¡û
>C161039624
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1735840
1735758
-
Tyr
GTA
[Ensembl]
¡û
>W1610069280
BCSI01000018
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
8246
8328
+
Tyr
GTA
[ENA]
¡û
>W1610095041
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
686951
686869
-
Tyr
GTA
[ENA]
¡û
>W1610738918
LMPI01000023
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
57417
57502
+
Tyr
GTA
[ENA]
¡û
>W1610738988
LMPK01000015
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
170547
170462
-
Tyr
GTA
[ENA]
¡û
>W1610992462
LWSF01000023
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
128472
128390
-
Tyr
GTA
[ENA]
¡û
>W1710066653
BCSI01000018
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
8246
8328
+
Tyr
GTA
[ENA]
¡û
>W1710097836
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
686951
686869
-
Tyr
GTA
[ENA]
¡û
>W1710515501
FNBV01000005
Actinomycetota
Cellulosimicrobium cellulans [FNBV]
167325
167409
+
Tyr
GTA
[ENA]
¡û
>W1710571642
FOWC01000001
Actinomycetota
Amycolatopsis rubida [FOWC]
158916
158998
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK