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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105706 (52 seq.)
>w015438
AAPD01000001
Bacteroidota
Flavobacteria bacterium BBFL7 [AAPD]
83126
83040
-
Leu
TAG
[ENA]
¡û
>WENV180104847
OAPC01143210
[OAPC] marine metagenome; na
203
121
-
Leu
TAG
[ENA]
¡û
>WENV180113868
OAPR01040792
[OAPR] marine metagenome; seawater
215
133
-
Leu
TAG
[ENA]
¡û
>WENV180383545
OBOV01000156
[OBOV] marine metagenome; ENV:00002010
18
100
+
Leu
TAG
[ENA]
¡û
>WENV180396686
OBPV01059093
[OBPV] marine metagenome; ENVO:00002010
75
157
+
Leu
TAG
[ENA]
¡û
>WENV180398091
OBPZ01074879
[OBPZ] marine metagenome; ENVO:00002010
346
264
-
Leu
TAG
[ENA]
¡û
>WENV180594049
OCOY01020539
[OCOY] marine metagenome; ENVO:00002010
300
218
-
Leu
TAG
[ENA]
¡û
>WENV181322198
OFKP01021384
[OFKP] marine metagenome; sea ice
233
151
-
Leu
TAG
[ENA]
¡û
>W141238397
BBLG01000005
Bacteroidota
Nonlabens ulvanivorans [BBLG]
146141
146223
+
Leu
TAG
[ENA]
¡û
>W141238775
BBMJ01000005
Bacteroidota
Nonlabens ulvanivorans [BBMJ]
226991
227073
+
Leu
TAG
[ENA]
¡û
>W141238801
BBMK01000001
Bacteroidota
Nonlabens ulvanivorans [BBMK]
78064
77982
-
Leu
TAG
[ENA]
¡û
>W141238857
BBMM01000004
Bacteroidota
Nonlabens ulvanivorans [BBMM]
153556
153638
+
Leu
TAG
[ENA]
¡û
>WENV182558132
OJDL01006367
[OJDL] seawater metagenome; Sea water
94
176
+
Leu
TAG
[ENA]
¡û
>WENV182564338
OJEE01009257
[OJEE] seawater metagenome; Sea water
105
187
+
Leu
TAG
[ENA]
¡û
>WENV182569994
OJFB01003813
[OJFB] seawater metagenome; Sea water
637
555
-
Leu
TAG
[ENA]
¡û
>WENV182590911
OJIK01003612
[OJIK] seawater metagenome; Sea water
1475
1557
+
Leu
TAG
[ENA]
¡û
>WENV182591635
OJIO01001058
[OJIO] seawater metagenome; Sea water
11069
10987
-
Leu
TAG
[ENA]
¡û
>WENV183617308
OOEE01165072
[OOEE] marine metagenome; sea ice
170
252
+
Leu
TAG
[ENA]
¡û
>WENV183617617
OOEG01019341
[OOEG] marine metagenome; sea ice
278
196
-
Leu
TAG
[ENA]
¡û
>WENV183620183
OOFR01012168
[OOFR] marine metagenome; seawater
811
893
+
Leu
TAG
[ENA]
¡û
>WENV183621021
OOFT01002538
[OOFT] marine metagenome; sea ice
652
570
-
Leu
TAG
[ENA]
¡û
>WENV183624537
OOGD01031164
[OOGD] marine metagenome; sea ice
46
128
+
Leu
TAG
[ENA]
¡û
>WENV183625575
OOGG01001386
[OOGG] marine metagenome; sea ice
708
626
-
Leu
TAG
[ENA]
¡û
>WENV183628212
OOGM01057980
[OOGM] marine metagenome; sea ice
168
86
-
Leu
TAG
[ENA]
¡û
>WENV170130971
CENR01073561
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5127
5045
-
Leu
TAG
[ENA]
¡û
>WENV170155587
CEOG01061720
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
383
301
-
Leu
TAG
[ENA]
¡û
>WENV170275184
CERM01071205
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2721
2803
+
Leu
TAG
[ENA]
¡û
>WENV170582223
FUFK010076743
[FUFK] metagenome; unknown
604
686
+
Leu
TAG
[ENA]
¡û
>WENV170783408
MAAC01016686
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
8295
8377
+
Leu
TAG
[ENA]
¡û
>C181113280
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
1389991
1390073
+
Leu
TAG
-
¡û
>W141805208
JPJI01000032
Bacteroidota
Nonlabens ulvanivorans [JPJI]
1020127
1020209
+
Leu
TAG
[ENA]
¡û
>W1910785620
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2979100
2979184
+
Leu
TAG
[ENA]
¡û
>W1910785717
MQVW01000022
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
122476
122394
-
Leu
TAG
[ENA]
¡û
>W1910805319
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
874681
874599
-
Leu
TAG
[ENA]
¡û
>W1810296285
PTJE01000001
Bacteroidota
Nonlabens xylanidelens DSM 16809 [PTJE]
112874
112792
-
Leu
TAG
[ENA]
¡û
>W1810356558
PVNA01000001
Bacteroidota
Nonlabens ulvanivorans DSM 22727 [PVNA]
1022284
1022366
+
Leu
TAG
[ENA]
¡û
>W1810685951
QKZR01000001
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
794463
794381
-
Leu
TAG
[ENA]
¡û
>W2010107342
BKCF01000001
Bacteroidota
Ulvibacter sp. KK4 [BKCF]
9942
9860
-
Leu
TAG
[ENA]
¡û
>W2010107387
BKCG01000007
Bacteroidota
Ulvibacter marinus NBRC 109484 [BKCG]
155749
155831
+
Leu
TAG
[ENA]
¡û
>W2010894147
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
2979100
2979184
+
Leu
TAG
[ENA]
¡û
>W2010894244
MQVW01000022
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
122476
122394
-
Leu
TAG
[ENA]
¡û
>W2010913031
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
874681
874599
-
Leu
TAG
[ENA]
¡û
>W2110315277
JADFCO010000060
Bacteroidota
Nonlabens antarcticus JCM 14068 [JADFCO]
11337
11255
-
Leu
TAG
[ENA]
¡û
>W2110330966
JADKYU010000335
Bacteroidota
Nonlabens mediterrranea TC4 [JADKYU]
14258
14176
-
Leu
TAG
[ENA]
¡û
>C201221011
CP049057
Bacteroidota
Flavobacteriaceae bacterium RR4-40 [CP049057]
1696926
1696844
-
Leu
TAG
-
¡û
>W1510012993
BBNT01000011
Bacteroidota
Nonlabens ulvanivorans JCM 19275 [BBNT]
1572
1654
+
Leu
TAG
[ENA]
¡û
>C241081663
CP043633
Bacteroidota
Nonlabens sp. Ci31 [CP043633]
1622355
1622437
+
Leu
TAG
-
¡û
>C241329158
CP136694
Bacteroidota
Nonlabens ulvanivorans CI.11.F.A3 [CP136694]
2184486
2184404
-
Leu
TAG
-
¡û
>C131001117
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
1015028
1014944
-
Leu
TAG
[Ensembl]
¡û
>W1610584175
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
994006
994088
+
Leu
TAG
[ENA]
¡û
>WENV080371
ABCO01000002
Unidentified eubacterium SCB49
330150
330066
-
Leu
TAG
[ENA]
>W1710703323
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
994006
994088
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK