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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105740 (62 seq.)
>W1710860186
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
69576
69492
-
Tyr
GTA
[ENA]
¡û
>W1710861940
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
508217
508301
+
Tyr
GTA
[ENA]
¡û
>W1710862570
LMEM01000001
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
144167
144083
-
Tyr
GTA
[ENA]
¡û
>W1710865841
LMGZ01000018
Alphaproteobacteria
Devosia sp. Root635 [LMGZ]
297666
297582
-
Tyr
GTA
[ENA]
¡û
>W1710866372
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
909439
909355
-
Tyr
GTA
[ENA]
¡û
>W1710871898
LMLO01000021
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
671624
671708
+
Tyr
GTA
[ENA]
¡û
>W1710878238
LMQU01000001
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
159750
159666
-
Tyr
GTA
[ENA]
¡û
>W1711385197
MEDU01000254
Alphaproteobacteria
Devosia sp. SCN 66-27 [MEDU]
3461
3377
-
Tyr
GTA
[ENA]
¡û
>W1711386028
MEEV01000029
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
5196
5112
-
Tyr
GTA
[ENA]
¡û
>W1711504921
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
978442
978358
-
Tyr
GTA
[ENA]
¡û
>W1711504949
MKVB01000001
Alphaproteobacteria
Devosia sp. 66-14 [MKVB]
253282
253366
+
Tyr
GTA
[ENA]
¡û
>WENV180015670
FSSO01000022
[FSSO] metagenome; soil
42
126
+
Tyr
GTA
[ENA]
¡û
>WENV180032454
FTJZ01242451
[FTJZ] metagenome; soil
114
30
-
Tyr
GTA
[ENA]
¡û
>WENV180033517
FTKK01189310
[FTKK] metagenome; soil
87
3
-
Tyr
GTA
[ENA]
¡û
>WENV181193181
OEPS011576846
[OEPS] soil metagenome; soil
107
191
+
Tyr
GTA
[ENA]
¡û
>WENV181308541
OFIS01072292
[OFIS] sludge metagenome; sludge
426
342
-
Tyr
GTA
[ENA]
¡û
>W141260984
CCAO010000090
Alphaproteobacteria
Devosia sp. DBB001 DDB001 [CCAO]
23170
23254
+
Tyr
GTA
[ENA]
¡û
>WENV170022256
BCQK01002999
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2527
2443
-
Tyr
GTA
[ENA]
¡û
>WENV170767372
LXNH01000935
[LXNH] seawater metagenome; marine seawater
2681
2765
+
Tyr
GTA
[ENA]
¡û
>C191130650
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
1448565
1448649
+
Tyr
GTA
-
¡û
>W141739312
JNNO01000043
Alphaproteobacteria
Devosia sp. LC5 [JNNO]
111205
111121
-
Tyr
GTA
[ENA]
¡û
>W141814293
JQGB01000002
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
205456
205372
-
Tyr
GTA
[ENA]
¡û
>W141814346
JQGC01000006
Alphaproteobacteria
Devosia riboflavina [JQGC]
34716
34800
+
Tyr
GTA
[ENA]
¡û
>W1810426029
PYVW01000001
Alphaproteobacteria
Devosia naphthalenivorans CM5-1 [PYVW]
154712
154628
-
Tyr
GTA
[ENA]
¡û
>W1810426293
PYWB01000003
Alphaproteobacteria
Devosia submarina JCM 18935 [PYWB]
1056
1140
+
Tyr
GTA
[ENA]
¡û
>C151079190
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
2009903
2009819
-
Tyr
GTA
[Ensembl]
¡û
>W2010586321
JABAOL010000001
Alphaproteobacteria
Devosia sp. 919 [JABAOL]
1964007
1964091
+
Tyr
GTA
[ENA]
¡û
>W2010586361
JABAOM010000001
Alphaproteobacteria
Devosia sp. 1635 [JABAOM]
837102
837186
+
Tyr
GTA
[ENA]
¡û
>W2011513123
RZNJ01000002
Alphaproteobacteria
Arsenicitalea aurantiaca 42-50 [RZNJ]
705568
705484
-
Tyr
GTA
[ENA]
¡û
>W2011694454
STGC01000005
Alphaproteobacteria
Devosia sp. FKR38 [STGC]
1576749
1576833
+
Tyr
GTA
[ENA]
¡û
>W2011785615
UCAU01000028
Alphaproteobacteria
Rhizobiales bacterium [UCAU]
20304
20220
-
Tyr
GTA
[ENA]
¡û
>W2110022700
BMFM01000001
Alphaproteobacteria
Youhaiella tibetensis CGMCC 1.12719 [BMFM]
672285
672369
+
Tyr
GTA
[ENA]
¡û
>W2110581084
JAGXTP010000001
Alphaproteobacteria
Devosia sp. BSSL-BM10 [JAGXTP]
1026026
1025942
-
Tyr
GTA
[ENA]
¡û
>W2110669783
JAIEZN010000001
Alphaproteobacteria
Devosia sp. CJK-A8-3 [JAIEZN]
1581970
1582054
+
Tyr
GTA
[ENA]
¡û
>C201169792
CP045919
Alphaproteobacteria
Devosia sp. D6-9 [CP045919]
1795418
1795502
+
Tyr
GTA
-
¡û
>C211063154
CP045422
Alphaproteobacteria
Devosia sp. S02 [CP045422]
3450558
3450474
-
Tyr
GTA
-
¡û
>C211255066
CP068983
Alphaproteobacteria
Paradevosia shaoguanensis J5-3 [CP068983]
3495881
3495965
+
Tyr
GTA
-
¡û
>C231096994
CP063401
Alphaproteobacteria
Devosia sp. SL43 [CP063401]
756658
756742
+
Tyr
GTA
-
¡û
>C231483171
CP104002
Alphaproteobacteria
Devosia sp. SD17-2 [CP104002]
2765634
2765718
+
Tyr
GTA
-
¡û
>C231483364
CP104007
Alphaproteobacteria
Devosia sp. FJ2-5-3 [CP104007]
2745433
2745517
+
Tyr
GTA
-
¡û
>C231501076
CP104965
Alphaproteobacteria
Devosia neptuniae A18/4-1 [CP104965]
3062989
3062905
-
Tyr
GTA
-
¡û
>C231501201
CP104974
Alphaproteobacteria
Devosia sp. A8/3-2 [CP104974]
2427471
2427387
-
Tyr
GTA
-
¡û
>C231619898
CP119312
Alphaproteobacteria
Devosia sp. [CP119312]
1173235
1173151
-
Tyr
GTA
-
¡û
>C241059314
CP041690
Alphaproteobacteria
Youhaiella tibetensis fig4 [CP041690]
2774804
2774720
-
Tyr
GTA
-
¡û
>C241064535
CP042304
Alphaproteobacteria
Devosia ginsengisoli Gsoil 520 [CP042304]
1405493
1405577
+
Tyr
GTA
-
¡û
>W2310023964
BSNG01000001
Alphaproteobacteria
Devosia yakushimensis NBRC 103855 [BSNG]
1237460
1237376
-
Tyr
GTA
[ENA]
¡û
>W1511568582
LAJE01000089
Alphaproteobacteria
Devosia insulae DS-56 [LAJE]
189443
189527
+
Tyr
GTA
[ENA]
¡û
>W1511568628
LAJF01000137
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
34379
34463
+
Tyr
GTA
[ENA]
¡û
>W1511573954
LANJ01000012
Alphaproteobacteria
Devosia epidermidihirudinis E84 [LANJ]
189447
189531
+
Tyr
GTA
[ENA]
¡û
>W1511576787
LAPV01000066
Alphaproteobacteria
Devosia psychrophila Cr7-05 [LAPV]
3722
3638
-
Tyr
GTA
[ENA]
¡û
>C161047963
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
4542649
4542733
+
Tyr
GTA
-
¡û
>W1610722532
LMCR01000012
Alphaproteobacteria
Devosia sp. Root105 [LMCR]
69576
69492
-
Tyr
GTA
[ENA]
¡û
>W1610724286
LMEA01000007
Alphaproteobacteria
Devosia sp. Root413D1 [LMEA]
508217
508301
+
Tyr
GTA
[ENA]
¡û
>W1610724916
LMEM01000001
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
144167
144083
-
Tyr
GTA
[ENA]
¡û
>W1610728187
LMGZ01000018
Alphaproteobacteria
Devosia sp. Root635 [LMGZ]
297666
297582
-
Tyr
GTA
[ENA]
¡û
>W1610728718
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
909439
909355
-
Tyr
GTA
[ENA]
¡û
>W1610734244
LMLO01000021
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
671624
671708
+
Tyr
GTA
[ENA]
¡û
>W1610740584
LMQU01000001
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
159750
159666
-
Tyr
GTA
[ENA]
¡û
>W1710550645
FOFL01000004
Alphaproteobacteria
Devosia sp. YR412 [FOFL]
325261
325345
+
Tyr
GTA
[ENA]
¡û
>W1710558689
FOMB01000053
Alphaproteobacteria
Devosia psychrophila [FOMB]
3824
3740
-
Tyr
GTA
[ENA]
¡û
>W1710582155
FPKU01000001
Alphaproteobacteria
Devosia enhydra [FPKU]
282582
282666
+
Tyr
GTA
[ENA]
¡û
>W1710583795
FQVC01000002
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
124607
124691
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK