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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105842 (33 seq.)
>W1710945952
LORR01000011
Gammaproteobacteria
Citrobacter koseri [LORR]
230812
230896
+
Tyr
GTA
[ENA]
¡û
>W1711823878
MXOA01000001
Gammaproteobacteria
Salmonella enterica subsp. indica serovar 11:b:1 [MXOA]
121055
121139
+
Tyr
GTA
[ENA]
¡û
>W1712023881
NFBF01000001
Gammaproteobacteria
Klebsiella pneumoniae [NFBF]
456064
455980
-
Tyr
GTA
[ENA]
¡û
>WENV180117278
OARD01026629
[OARD] human gut metagenome; ENVO:feces
142
223
+
Tyr
GTA
[ENA]
¢þ
>WENV180192833
OAZV01000046
[OAZV] human gut metagenome; faeces
31524
31440
-
Tyr
GTA
[ENA]
¢þ
>WENV180419633
OBVN01000166
[OBVN] human gut metagenome; faeces
32439
32355
-
Tyr
GTA
[ENA]
¢þ
>WENV181925925
OGYM01013708
[OGYM] human gut metagenome; faeces
2699
2615
-
Tyr
GTA
[ENA]
¢þ
>WENV182300500
OHWM01007837
[OHWM] human gut metagenome; feces
1061
977
-
Tyr
GTA
[ENA]
¢þ
>WENV182918762
OKTW01049849
[OKTW] human gut metagenome; feces
112
28
-
Tyr
GTA
[ENA]
¢þ
>WENV183649881
OQVT01006649
[OQVT] human gut metagenome; human gut
6806
6890
+
Tyr
GTA
[ENA]
¢þ
>C181057080
CP022073
Gammaproteobacteria
Citrobacter koseri FDAARGOS_287 [CP022073]
3976338
3976254
-
Tyr
GTA
-
¡û
>C181105847
CP024819
Gammaproteobacteria
Citrobacter freundii CRCB-101 [CP024819]
3068766
3068682
-
Tyr
GTA
-
¡û
>C181137906
CP026697
Gammaproteobacteria
Citrobacter koseri AR_0025 [CP026697]
2988935
2988851
-
Tyr
GTA
-
¡û
>C191211476
LR134475
Gammaproteobacteria
Klebsiella aerogenes NCTC9735 [LR134475]
4950323
4950239
-
Tyr
GTA
-
¡û
>W141738538
JNNE01000097
Gammaproteobacteria
Escherichia coli 2-052-05_S1_C3 [JNNE]
17049
16965
-
Tyr
GTA
[ENA]
¡û
>W141742178
JNPM01000025
Gammaproteobacteria
Escherichia coli 2-177-06_S1_C3 [JNPM]
58088
58004
-
Tyr
GTA
[ENA]
¡û
>W1911426640
NXIM01000001
Gammaproteobacteria
Enterobacter hormaechei ST-231:Ec010 [NXIM]
434104
434188
+
Tyr
GTA
[ENA]
¡û
>W1810093403
PGIF01000004
Gammaproteobacteria
Citrobacter koseri YDC582 [PGIF]
254886
254802
-
Tyr
GTA
[ENA]
¡û
>W1810294463
PTHY01000031
Gammaproteobacteria
Enterobacter hormaechei 2114/3146 [PTHY]
46850
46766
-
Tyr
GTA
[ENA]
¡û
>W1810401445
PYGX01000006
Gammaproteobacteria
Enterobacter hormaechei AUH-ENM2 [PYGX]
14961
14877
-
Tyr
GTA
[ENA]
¡û
>W1810677560
QKNA01000001
Gammaproteobacteria
Citrobacter koseri CK778 [QKNA]
2097927
2097843
-
Tyr
GTA
[ENA]
¡û
>W1810677561
QKNA01000001
Gammaproteobacteria
Citrobacter koseri CK778 [QKNA]
2097806
2097722
-
Tyr
GTA
[ENA]
¡û
>W1810786430
QRCK01000003
Gammaproteobacteria
Enterobacter hormaechei TV1575ECL [QRCK]
14975
14891
-
Tyr
GTA
[ENA]
¡û
>C151067746
CP010384
Gammaproteobacteria
Enterobacter hormaechei subsp. xiangfangensis 34399 [CP010384]
2609547
2609631
+
Tyr
GTA
[Ensembl]
¡û
>W1511525500
JYGA02000001
Gammaproteobacteria
Enterobacter hormaechei MRSN 17626 [JYGA]
847500
847416
-
Tyr
GTA
[ENA]
¡û
>W1610446706
FKBF01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKBF]
267054
267138
+
Tyr
GTA
[ENA]
¡û
>W1610448182
FKCB01000002
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKCB]
70581
70497
-
Tyr
GTA
[ENA]
¡û
>W1610456752
FKGS01000008
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGS]
153
69
-
Tyr
GTA
[ENA]
¡û
>W1610801822
LORR01000011
Gammaproteobacteria
Citrobacter koseri [LORR]
230812
230896
+
Tyr
GTA
[ENA]
¡û
>W1760017947
NABG01000070
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport [NABG]
31552
31468
-
Tyr
GTA
[ENA]
¡û
>W1710446334
FKBF01000006
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKBF]
267054
267138
+
Tyr
GTA
[ENA]
¡û
>W1710447810
FKCB01000002
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKCB]
70581
70497
-
Tyr
GTA
[ENA]
¡û
>W1710456380
FKGS01000008
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGS]
153
69
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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