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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105852 (110 seq.)
>W1710804992
LJZQ01000013
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
71062
70978
-
Leu
GAG
[ENA]
¡û
>W1711018962
LQXJ01000001
Gammaproteobacteria
Marinobacter sp. C18 [LQXJ]
318552
318636
+
Leu
GAG
[ENA]
¡û
>W1711078046
LSMM01000036
Gammaproteobacteria
Marinobacter sp. Hex_13 [LSMM]
6983
6899
-
Leu
GAG
[ENA]
¡û
>W1711126331
LUOL01000048
Gammaproteobacteria
Marinobacter sp. REDSEA-S21_B2N3 [LUOL]
4696
4780
+
Leu
GAG
[ENA]
¡û
>W131187905
ASAD01000007
Gammaproteobacteria
Marinobacter lipolyticus SM19 [ASAD]
248516
248432
-
Leu
GAG
[ENA]
¡û
>C171114788
CP020931
Gammaproteobacteria
Marinobacter salarius SMR5 [CP020931]
938902
938986
+
Leu
GAG
-
¡û
>w027844
ABCP01000007
Gammaproteobacteria
Marinobacter algicola DG893 [ABCP]
35452
35366
-
Leu
GAG
[ENA]
¡û
>WENV180391725
OBPN01031082
[OBPN] marine metagenome; seawater
264
180
-
Leu
GAG
[ENA]
¡û
>WENV180395300
OBPT01007181
[OBPT] marine metagenome; ENVO:00002010 seawater
429
513
+
Leu
GAG
[ENA]
¡û
>WENV181321374
OFKM01000002
[OFKM] marine metagenome; sea ice
25791
25707
-
Leu
GAG
[ENA]
¡û
>WENV181322963
OFKW01000008
[OFKW] marine metagenome; sea ice
22067
21983
-
Leu
GAG
[ENA]
¡û
>WENV182541561
OJAU01000032
[OJAU] seawater metagenome; Sea water
32066
31982
-
Leu
GAG
[ENA]
¡û
>WENV182542401
OJAY01000488
[OJAY] seawater metagenome; Sea water
11274
11358
+
Leu
GAG
[ENA]
¡û
>WENV182542544
OJAZ01000003
[OJAZ] seawater metagenome; Sea water
137519
137603
+
Leu
GAG
[ENA]
¡û
>WENV182543450
OJBB01000280
[OJBB] seawater metagenome; Sea water
9589
9673
+
Leu
GAG
[ENA]
¡û
>WENV182546012
OJBO01000388
[OJBO] seawater metagenome; Sea water
21529
21445
-
Leu
GAG
[ENA]
¡û
>WENV182546472
OJBP01000006
[OJBP] seawater metagenome; Sea water
51046
50962
-
Leu
GAG
[ENA]
¡û
>WENV182547294
OJBS01000141
[OJBS] seawater metagenome; Sea water
27999
28083
+
Leu
GAG
[ENA]
¡û
>WENV182547630
OJBT01000126
[OJBT] seawater metagenome; Sea water
8047
7963
-
Leu
GAG
[ENA]
¡û
>WENV182548923
OJBX01001803
[OJBX] seawater metagenome; Sea water
2152
2068
-
Leu
GAG
[ENA]
¡û
>WENV182549604
OJBY01003168
[OJBY] seawater metagenome; Sea water
953
869
-
Leu
GAG
[ENA]
¡û
>WENV182550844
OJCB01000712
[OJCB] seawater metagenome; Sea water
585
669
+
Leu
GAG
[ENA]
¡û
>WENV182553295
OJCR01001301
[OJCR] seawater metagenome; Sea water
7824
7740
-
Leu
GAG
[ENA]
¡û
>WENV182555032
OJCY01000712
[OJCY] seawater metagenome; Sea water
5774
5690
-
Leu
GAG
[ENA]
¡û
>WENV182555430
OJDA01000432
[OJDA] seawater metagenome; Sea water
3863
3947
+
Leu
GAG
[ENA]
¡û
>WENV182555800
OJDD01000955
[OJDD] seawater metagenome; Sea water
965
1049
+
Leu
GAG
[ENA]
¡û
>WENV182557537
OJDK01000130
[OJDK] seawater metagenome; Sea water
6844
6928
+
Leu
GAG
[ENA]
¡û
>WENV182558781
OJDN01003222
[OJDN] seawater metagenome; Sea water
657
741
+
Leu
GAG
[ENA]
¡û
>WENV182559773
OJDQ01003865
[OJDQ] seawater metagenome; Sea water
2018
2102
+
Leu
GAG
[ENA]
¡û
>WENV182561434
OJDW01000050
[OJDW] seawater metagenome; Sea water
30753
30837
+
Leu
GAG
[ENA]
¡û
>WENV182563900
OJED01001874
[OJED] seawater metagenome; Sea water
1038
1122
+
Leu
GAG
[ENA]
¡û
>WENV182566827
OJEM01008524
[OJEM] seawater metagenome; Sea water
95
179
+
Leu
GAG
[ENA]
¡û
>WENV182567072
OJEN01001337
[OJEN] seawater metagenome; Sea water
2894
2810
-
Leu
GAG
[ENA]
¡û
>WENV182567406
OJEO01000598
[OJEO] seawater metagenome; Sea water
9991
9907
-
Leu
GAG
[ENA]
¡û
>WENV182567808
OJEP01000309
[OJEP] seawater metagenome; Sea water
9345
9261
-
Leu
GAG
[ENA]
¡û
>WENV182568188
OJER01000732
[OJER] seawater metagenome; Sea water
1835
1751
-
Leu
GAG
[ENA]
¡û
>WENV182568901
OJEX01000724
[OJEX] seawater metagenome; Sea water
3758
3674
-
Leu
GAG
[ENA]
¡û
>WENV182572027
OJFL01000102
[OJFL] seawater metagenome; Sea water
14967
14883
-
Leu
GAG
[ENA]
¡û
>WENV182573279
OJFP01000585
[OJFP] seawater metagenome; Sea water
2623
2539
-
Leu
GAG
[ENA]
¡û
>WENV182574173
OJFR01000390
[OJFR] seawater metagenome; Sea water
8915
8999
+
Leu
GAG
[ENA]
¡û
>WENV182574696
OJFS01000478
[OJFS] seawater metagenome; Sea water
12551
12635
+
Leu
GAG
[ENA]
¡û
>WENV182577306
OJGD01000364
[OJGD] seawater metagenome; Sea water
2754
2670
-
Leu
GAG
[ENA]
¡û
>WENV182578460
OJGO01000067
[OJGO] seawater metagenome; Sea water
57823
57907
+
Leu
GAG
[ENA]
¡û
>WENV182579878
OJGU01000174
[OJGU] seawater metagenome; Sea water
17810
17726
-
Leu
GAG
[ENA]
¡û
>WENV182580571
OJGW01003193
[OJGW] seawater metagenome; Sea water
3207
3123
-
Leu
GAG
[ENA]
¡û
>WENV182581482
OJGX01008914
[OJGX] seawater metagenome; Sea water
1238
1322
+
Leu
GAG
[ENA]
¡û
>WENV182583656
OJHE01000135
[OJHE] seawater metagenome; Sea water
9076
8992
-
Leu
GAG
[ENA]
¡û
>WENV182584414
OJHG01000198
[OJHG] seawater metagenome; Sea water
24534
24618
+
Leu
GAG
[ENA]
¡û
>WENV182585025
OJHH01000251
[OJHH] seawater metagenome; Sea water
5443
5359
-
Leu
GAG
[ENA]
¡û
>WENV182585618
OJHI01000080
[OJHI] seawater metagenome; Sea water
41038
41122
+
Leu
GAG
[ENA]
¡û
>WENV182585936
OJHJ01000091
[OJHJ] seawater metagenome; Sea water
14461
14377
-
Leu
GAG
[ENA]
¡û
>WENV182586367
OJHK01000135
[OJHK] seawater metagenome; Sea water
47976
48060
+
Leu
GAG
[ENA]
¡û
>WENV182587855
OJHO01000007
[OJHO] seawater metagenome; Sea water
14753
14669
-
Leu
GAG
[ENA]
¡û
>WENV182589017
OJHY01010138
[OJHY] seawater metagenome; Sea water
84
168
+
Leu
GAG
[ENA]
¡û
>WENV182591858
OJIO01008318
[OJIO] seawater metagenome; Sea water
953
869
-
Leu
GAG
[ENA]
¡û
>WENV182592750
OJIR01017837
[OJIR] seawater metagenome; Sea water
55
139
+
Leu
GAG
[ENA]
¡û
>WENV182592983
OJIS01003974
[OJIS] seawater metagenome; Sea water
585
669
+
Leu
GAG
[ENA]
¡û
>WENV183054748
OLGU01002537
[OLGU] seawater metagenome; Sea water
128
212
+
Leu
GAG
[ENA]
¡û
>WENV183055274
OLGX01000785
[OLGX] seawater metagenome; Sea water
3712
3628
-
Leu
GAG
[ENA]
¡û
>WENV183056977
OLHK01000148
[OLHK] seawater metagenome; Sea water
12647
12731
+
Leu
GAG
[ENA]
¡û
>WENV183057273
OLHL01000118
[OLHL] seawater metagenome; Sea water
29090
29174
+
Leu
GAG
[ENA]
¡û
>WENV183062230
OLID01000796
[OLID] seawater metagenome; Sea water
9761
9845
+
Leu
GAG
[ENA]
¡û
>WENV183522125
OMOM01000136
[OMOM] seawater metagenome; Sea water
9076
8992
-
Leu
GAG
[ENA]
¡û
>WENV183617747
OOEG01080267
[OOEG] marine metagenome; sea ice
403
319
-
Leu
GAG
[ENA]
¡û
>WENV183628494
OOGO01000091
[OOGO] marine metagenome; sea ice
12555
12471
-
Leu
GAG
[ENA]
¡û
>WENV170015524
AZIH01002893
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
89
173
+
Leu
GAG
[ENA]
¡û
>WENV170234327
CEQK01040628
[CEQK] marine metagenome genome assembly TARA_076_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3042
3126
+
Leu
GAG
[ENA]
¡û
>WENV170276776
CERO01026887
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
377
461
+
Leu
GAG
[ENA]
¡û
>WENV170667006
JYMV01042920
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
23108
23024
-
Leu
GAG
[ENA]
¡û
>WENV170667381
JYMV01046716
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
4180
4096
-
Leu
GAG
[ENA]
¡û
>WENV170672807
LAZR01002363
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
10874
10790
-
Leu
GAG
[ENA]
¡û
>WENV170823325
MDSY01055149
[MDSY] marine metagenome; seawater
23664
23748
+
Leu
GAG
[ENA]
¡û
>WENV170963734
MRWG01000610
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2722
2638
-
Leu
GAG
[ENA]
¡û
>C191018832
CP021333
Gammaproteobacteria
Marinobacter salarius HL2708#2 [CP021333]
2555218
2555302
+
Leu
GAG
-
¡û
>C191120185
CP034142
Gammaproteobacteria
Marinobacter sp. NP-4[2019] [CP034142]
3764155
3764071
-
Leu
GAG
-
¡û
>W141819737
JQMK01000014
Gammaproteobacteria
Marinobacter sp. MCTG268 [JQMK]
38964
39048
+
Leu
GAG
[ENA]
¡û
>W1910000582
AOMK01000609
Gammaproteobacteria
Marinobacter sp. DS40M8 [AOMK]
370
286
-
Leu
GAG
[ENA]
¡û
>W1810385122
PXNN01000011
Gammaproteobacteria
Marinobacter halophilus JCM 30472 [PXNN]
323573
323489
-
Leu
GAG
[ENA]
¡û
>W1810592241
QFWX01000001
Gammaproteobacteria
Marinobacter vulgaris F01 [QFWX]
419460
419544
+
Leu
GAG
[ENA]
¡û
>C151017553
CP007152
Gammaproteobacteria
Marinobacter salarius R9SW1 [CP007152]
2222511
2222595
+
Leu
GAG
[Ensembl]
¡û
>W2010071270
AOMK01000609
Gammaproteobacteria
Marinobacter sp. DS40M8 [AOMK]
370
286
-
Leu
GAG
[ENA]
¡û
>W2010302824
CABVLG010000005
Gammaproteobacteria
Marinobacter sp. EC-HK377 [CABVLG]
214132
214048
-
Leu
GAG
[ENA]
¡û
>W2010309872
CABWLQ010000005
Gammaproteobacteria
Marinobacter sp. N1 [CABWLQ]
1503145
1503229
+
Leu
GAG
[ENA]
¡û
>W2010588697
JABCKY010000001
Gammaproteobacteria
Marinobacter sp. W62 [JABCKY]
321458
321374
-
Leu
GAG
[ENA]
¡û
>W2011471215
RPOA01000001
Gammaproteobacteria
Marinobacter sp. NP-6 [RPOA]
2596981
2596897
-
Leu
GAG
[ENA]
¡û
>W2011679962
SRPF01000002
Gammaproteobacteria
Marinobacter confluentis HJM-18 [SRPF]
908473
908389
-
Leu
GAG
[ENA]
¡û
>W2011687784
SRZX01000001
Gammaproteobacteria
Marinobacter sp. W62 [SRZX]
562601
562517
-
Leu
GAG
[ENA]
¡û
>W2011972490
VCGW01000002
Gammaproteobacteria
Marinobacter maritimus CK47 [VCGW]
641655
641739
+
Leu
GAG
[ENA]
¡û
>W2012088300
VMBE01000001
Gammaproteobacteria
Marinobacter sp. F01 [VMBE]
279889
279805
-
Leu
GAG
[ENA]
¡û
>W2012089475
VMHO01000001
Gammaproteobacteria
Marinobacter confluentis KCTC 42705 [VMHO]
908479
908395
-
Leu
GAG
[ENA]
¡û
>W2012146199
VTUU01000001
Gammaproteobacteria
Marinobacter sp. ZYF650 [VTUU]
266275
266359
+
Leu
GAG
[ENA]
¡û
>W2012212363
VYXP01000008
Gammaproteobacteria
Wenzhouxiangella sp. W260 [VYXP]
23828
23912
+
Leu
GAG
[ENA]
¡û
>W2110429110
JAEMOQ010000017
Gammaproteobacteria
Marinobacter salarius NP2017 [JAEMOQ]
41075
40991
-
Leu
GAG
[ENA]
¡û
>W2110429168
JAEMOR010000074
Gammaproteobacteria
Marinobacter salarius AT3901 [JAEMOR]
25788
25704
-
Leu
GAG
[ENA]
¡û
>W2110430088
JAEMVG010000017
Gammaproteobacteria
Marinobacter sp. MW3 [JAEMVG]
67003
66919
-
Leu
GAG
[ENA]
¡û
>W2110507773
JAFKDB010000019
Gammaproteobacteria
Marinobacter daepoensis TN21-5 [JAFKDB]
24140
24224
+
Leu
GAG
[ENA]
¡û
>W2110650775
JAHVAO010000001
Gammaproteobacteria
Marinobacter sp. CAU 1620 [JAHVAO]
1769573
1769489
-
Leu
GAG
[ENA]
¡û
>W2110658472
JAHWRS010000001
Gammaproteobacteria
Marinobacter adhaerens DP2N14-4 [JAHWRS]
1915268
1915184
-
Leu
GAG
[ENA]
¡û
>W2110761389
QTKT01000016
Gammaproteobacteria
Marinobacter lipolyticus AESS41 [QTKT]
24145
24229
+
Leu
GAG
[ENA]
¡û
>W2110761704
QTNR01000003
Gammaproteobacteria
Marinobacter salarius DSW18 [QTNR]
286611
286527
-
Leu
GAG
[ENA]
¡û
>W2110771044
VCGZ01000006
Gammaproteobacteria
Marinobacter sp. 1-3A [VCGZ]
210999
210915
-
Leu
GAG
[ENA]
¡û
>W2110771085
VCHA01000002
Gammaproteobacteria
Marinobacter sp. DY40_1A1 [VCHA]
104302
104218
-
Leu
GAG
[ENA]
¡û
>C241329089
CP136693
Gammaproteobacteria
Marinobacter salarius CI.11.F.A3 [CP136693]
1619198
1619282
+
Leu
GAG
-
¡û
>W1511677320
LFBU01000001
Gammaproteobacteria
Marinobacter subterrani JG233 [LFBU]
2708000
2707916
-
Leu
GAG
[ENA]
¡û
>W1610629369
LIHP01000001
Gammaproteobacteria
Marinobacter sp. HL-58 [LIHP]
337524
337608
+
Leu
GAG
[ENA]
¡û
>W1610668849
LJZQ01000013
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
71062
70978
-
Leu
GAG
[ENA]
¡û
>W1610917062
LSMM01000036
Gammaproteobacteria
Marinobacter sp. Hex_13 [LSMM]
6983
6899
-
Leu
GAG
[ENA]
¡û
>W1610937264
LUOL01000048
Gammaproteobacteria
Marinobacter sp. REDSEA-S21_B2N3 [LUOL]
4696
4780
+
Leu
GAG
[ENA]
¡û
>W1710568751
FOTV01000010
Gammaproteobacteria
Marinobacter salarius DSM 26291 [FOTV]
137687
137771
+
Leu
GAG
[ENA]
¡û
>W1710760508
LIHP01000001
Gammaproteobacteria
Marinobacter sp. HL-58 [LIHP]
337524
337608
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK