This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105877 (45 seq.)
>W1710889296
LNAL01000003
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
638241
638159
-
Leu
CAA
[ENA]
¡û
>W131215977
ATVL01000008
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
189654
189738
+
Leu
CAA
[ENA]
¡û
>W1711726879
MTSE01000010
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
51787
51869
+
Leu
CAA
[ENA]
¡û
>W1711767893
MVBC01000013
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
185179
185263
+
Leu
CAA
[ENA]
¡û
>WENV180000601
FLNV01000889
[FLNV] bioreactor metagenome; Moose rumen
5469
5387
-
Leu
CAA
[ENA]
¡û
>C191087858
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
1856402
1856484
+
Leu
CAA
-
¡û
>C191154881
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
3464206
3464288
+
Leu
CAA
-
¡û
>C191183785
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
753517
753599
+
Leu
CAA
-
¡û
>W1910547415
FZNS01000008
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
104526
104444
-
Leu
CAA
[ENA]
¡û
>W1810625904
QHKM01000004
Bacteroidota
Hymenobacter edaphi NL [QHKM]
501001
500919
-
Leu
CAA
[ENA]
¡û
>W1810678981
QKNS01000007
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
125404
125486
+
Leu
CAA
[ENA]
¡û
>W1810693467
QLLK01000003
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
68649
68567
-
Leu
CAA
[ENA]
¡û
>W2010429176
FZNS01000008
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
104526
104444
-
Leu
CAA
[ENA]
¡û
>W2010700840
JACHGG010000002
Bacteroidota
Hymenobacter luteus DSM 26718 [JACHGG]
695890
695972
+
Leu
CAA
[ENA]
¡û
>W2010711761
JACHNV010000002
Bacteroidota
Hymenobacter latericoloratus DSM 26701 [JACHNV]
469030
468948
-
Leu
CAA
[ENA]
¡û
>W2011498523
RXOF01000020
Bacteroidota
Hymenobacter gummosus KCTC 52166 [RXOF]
90436
90518
+
Leu
CAA
[ENA]
¡û
>W2011961189
VAJM01000023
Bacteroidota
Hymenobacter jeollabukensis 1-3-3-8 [VAJM]
3812
3730
-
Leu
CAA
[ENA]
¡û
>W2012146800
VTWU01000001
Bacteroidota
Hymenobacter sp. M3 [VTWU]
34275
34193
-
Leu
CAA
[ENA]
¡û
>W2110022765
BMFN01000002
Bacteroidota
Hymenobacter qilianensis CGMCC 1.12720 [BMFN]
999143
999225
+
Leu
CAA
[ENA]
¡û
>W2110025668
BMHT01000006
Bacteroidota
Hymenobacter cavernae CGMCC 1.15197 [BMHT]
141581
141663
+
Leu
CAA
[ENA]
¡û
>W2110250714
JACSCW010000003
Bacteroidota
Hymenobacter sp. BT188 [JACSCW]
687075
686993
-
Leu
CAA
[ENA]
¡û
>W2110250795
JACSCY010000009
Bacteroidota
Hymenobacter citatus BT507 [JACSCY]
66568
66486
-
Leu
CAA
[ENA]
¡û
>W2110251312
JACSJJ010000001
Bacteroidota
Hymenobacter sp. BT491 [JACSJJ]
639285
639203
-
Leu
CAA
[ENA]
¡û
>W2110512305
JAFLQZ010000021
Bacteroidota
Hymenobacter sp. BT186 [JAFLQZ]
50106
50189
+
Leu
CAA
[ENA]
¡û
>W2110532035
JAGETX010000007
Bacteroidota
Hymenobacter defluvii BT507 [JAGETX]
51528
51446
-
Leu
CAA
[ENA]
¡û
>W2110657605
JAHWGL010000003
Bacteroidota
Hymenobacter profundi M2 [JAHWGL]
56175
56257
+
Leu
CAA
[ENA]
¡û
>W2110659038
JAHWXR010000021
Bacteroidota
Hymenobacter norwichensis KCTC 72338 [JAHWXR]
50106
50189
+
Leu
CAA
[ENA]
¡û
>W2110667682
JAHZTD010000001
Bacteroidota
Hymenobacter sp. HSC-4F20 [JAHZTD]
2114062
2114144
+
Leu
CAA
[ENA]
¡û
>C211060464
CP043644
Bacteroidota
Hymenobacter sp. NBH84 [CP043644]
613008
612926
-
Leu
CAA
-
¡û
>C211138852
CP060784
Bacteroidota
Hymenobacter qilianensis JCM 19763 [CP060784]
303609
303691
+
Leu
CAA
-
¡û
>W2110714265
JAIZZH010000001
Bacteroidota
Hymenobacter sp. BT728 [JAIZZH]
360031
359949
-
Leu
CAA
[ENA]
¡û
>C231346918
CP094669
Bacteroidota
Hymenobacter tibetensis KACC 21982 [CP094669]
1682795
1682713
-
Leu
CAA
-
¡û
>C231355713
CP095053
Bacteroidota
Hymenobacter sp. 5413J-13 [CP095053]
3063255
3063337
+
Leu
CAA
-
¡û
>C231355883
CP095061
Bacteroidota
Hymenobacter sp. 5420S-77 [CP095061]
1438626
1438543
-
Leu
CAA
-
¡û
>C231528154
CP110136
Bacteroidota
Hymenobacter sp. YIM 151858-1 [CP110136]
2027849
2027931
+
Leu
CAA
-
¡û
>C231528194
CP110139
Bacteroidota
Hymenobacter sp. YIM 151500-1 [CP110139]
2017498
2017580
+
Leu
CAA
-
¡û
>C241054997
CP040936
Bacteroidota
Hymenobacter sp. DG01 [CP040936]
2312050
2312132
+
Leu
CAA
-
¡û
>C241088061
CP044285
Bacteroidota
Hymenobacter baengnokdamensis BRD72 [CP044285]
1801514
1801432
-
Leu
CAA
-
¡û
>C241122107
CP047647
Bacteroidota
Hymenobacter busanensis BT182 [CP047647]
1742911
1742993
+
Leu
CAA
-
¡û
>C241138818
CP049907
Bacteroidota
Hymenobacter sp. HDW8 [CP049907]
4083523
4083441
-
Leu
CAA
-
¡û
>C241162324
CP053904
Bacteroidota
Hymenobacter sp. BRD67 [CP053904]
203844
203762
-
Leu
CAA
-
¡û
>W1511543328
JZIR01000096
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
24733
24649
-
Leu
CAA
[ENA]
¡û
>W1610749674
LNAL01000003
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
638241
638159
-
Leu
CAA
[ENA]
¡û
>W1710573724
FOXS01000001
Bacteroidota
Hymenobacter arizonensis [FOXS]
1320215
1320297
+
Leu
CAA
[ENA]
¡û
>W1710605408
FWWW01000055
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
127838
127756
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK