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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105912 (64 seq.)
>C012998
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2994078
2994162
+
Leu
CAA
[Ensembl]
¡û
>C012999
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
3671436
3671520
+
Leu
CAA
[Ensembl]
¡û
>WENV180042147
LNFX01000710
[LNFX] marine sediment metagenome; antarctic beach sand mud
125
41
-
Leu
CAA
[ENA]
¡û
>WENV180042157
LNFX01001121
[LNFX] marine sediment metagenome; antarctic beach sand mud
125
41
-
Leu
CAA
[ENA]
¡û
>WENV180042158
LNFX01001179
[LNFX] marine sediment metagenome; antarctic beach sand mud
129
213
+
Leu
CAA
[ENA]
¡û
>W141284701
JAMB01000015
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
14305
14221
-
Leu
CAA
[ENA]
¡û
>W141284710
JAMB01000022
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
15592
15676
+
Leu
CAA
[ENA]
¡û
>C191039845
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
1561402
1561318
-
Leu
CAA
-
¡û
>C191039846
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
1150829
1150745
-
Leu
CAA
-
¡û
>W09106450
AAVH01000004
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
228115
228031
-
Leu
CAA
[ENA]
¡û
>W09106484
AAVH01000034
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
3705
3621
-
Leu
CAA
[ENA]
¡û
>W1910584836
JYBL01000011
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
171943
172027
+
Leu
CAA
[ENA]
¡û
>W1910914863
NHTT01000003
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
341523
341439
-
Leu
CAA
[ENA]
¡û
>W1910914865
NHTT01000005
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
308355
308439
+
Leu
CAA
[ENA]
¡û
>W1810606213
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
204287
204203
-
Leu
CAA
[ENA]
¡û
>W1810606239
QGOK01000011
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
90271
90187
-
Leu
CAA
[ENA]
¡û
>W1810625220
QHJF01000006
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
98522
98606
+
Leu
CAA
[ENA]
¡û
>W1810625227
QHJF01000014
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
39066
38982
-
Leu
CAA
[ENA]
¡û
>W1810676255
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
112311
112227
-
Leu
CAA
[ENA]
¡û
>W1810721683
QNSE01000004
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
282718
282634
-
Leu
CAA
[ENA]
¡û
>W1810721684
QNSE01000006
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
251273
251357
+
Leu
CAA
[ENA]
¡û
>W1810759685
QPJQ01000006
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
89428
89512
+
Leu
CAA
[ENA]
¡û
>W1810759726
QPJQ01000026
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
67527
67610
+
Leu
CAA
[ENA]
¡û
>W2010584369
JABAEK010000002
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
295616
295532
-
Leu
CAA
[ENA]
¡û
>W2010584396
JABAEK010000014
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
21486
21402
-
Leu
CAA
[ENA]
¡û
>W2010764339
JYBL01000011
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
171943
172027
+
Leu
CAA
[ENA]
¡û
>W2010967723
NHTT01000003
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
341523
341439
-
Leu
CAA
[ENA]
¡û
>W2010967725
NHTT01000005
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
308355
308439
+
Leu
CAA
[ENA]
¡û
>W2011222024
PTXN01000002
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
5955
6039
+
Leu
CAA
[ENA]
¡û
>W2011222058
PTXN01000009
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
181280
181364
+
Leu
CAA
[ENA]
¡û
>W2011431029
RIZG01000002
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
62627
62711
+
Leu
CAA
[ENA]
¡û
>W2011431030
RIZG01000002
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
278558
278642
+
Leu
CAA
[ENA]
¡û
>W2011431101
RIZH01000004
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
282561
282477
-
Leu
CAA
[ENA]
¡û
>W2011431102
RIZH01000005
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
251181
251265
+
Leu
CAA
[ENA]
¡û
>W2011611866
SJSB01000003
Gammaproteobacteria
Marinomonas sp. JHZ-47 [SJSB]
160304
160220
-
Leu
CAA
[ENA]
¡û
>W2011611876
SJSB01000005
Gammaproteobacteria
Marinomonas sp. JHZ-47 [SJSB]
20083
19999
-
Leu
CAA
[ENA]
¡û
>W2011611959
SJSC01000003
Gammaproteobacteria
Marinomonas sp. KMM3893 [SJSC]
490971
490887
-
Leu
CAA
[ENA]
¡û
>W2011611960
SJSC01000003
Gammaproteobacteria
Marinomonas sp. KMM3893 [SJSC]
135180
135096
-
Leu
CAA
[ENA]
¡û
>W2012132100
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
2492828
2492912
+
Leu
CAA
[ENA]
¡û
>W2012132144
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
1437121
1437037
-
Leu
CAA
[ENA]
¡û
>W2110030194
BMLJ01000005
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
151682
151598
-
Leu
CAA
[ENA]
¡û
>W2110030210
BMLJ01000011
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
135369
135453
+
Leu
CAA
[ENA]
¡û
>W2110428823
JAEMNX010000002
Gammaproteobacteria
Marinomonas sp. C1424 [JAEMNX]
121296
121380
+
Leu
CAA
[ENA]
¡û
>W2110429620
JAEMUI010000002
Gammaproteobacteria
Marinomonas spartinae USM8 [JAEMUI]
198616
198532
-
Leu
CAA
[ENA]
¡û
>W2110429632
JAEMUI010000014
Gammaproteobacteria
Marinomonas spartinae USM8 [JAEMUI]
132880
132964
+
Leu
CAA
[ENA]
¡û
>W2110617666
JAHLLW010000003
Gammaproteobacteria
Marinomonas sp. E165 [JAHLLW]
104127
104211
+
Leu
CAA
[ENA]
¡û
>C211141995
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
2604040
2604124
+
Leu
CAA
-
¡û
>C211142049
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
1340652
1340568
-
Leu
CAA
-
¡û
>C211273587
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
3683015
3682931
-
Leu
CAA
-
¡û
>C211273588
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
3219898
3219814
-
Leu
CAA
-
¡û
>C231129694
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
605119
605203
+
Leu
CAA
-
¡û
>C231129735
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
3112733
3112649
-
Leu
CAA
-
¡û
>C231130906
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
2556098
2556182
+
Leu
CAA
-
¡û
>C231130907
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
3123877
3123961
+
Leu
CAA
-
¡û
>C241010755
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
2047531
2047615
+
Leu
CAA
-
¡û
>C241010756
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
2485340
2485424
+
Leu
CAA
-
¡û
>W1610503681
FLOB01000002
Gammaproteobacteria
Marinomonas spartinae [FLOB]
569433
569349
-
Leu
CAA
[ENA]
¡û
>W1610503683
FLOB01000003
Gammaproteobacteria
Marinomonas spartinae [FLOB]
165961
166045
+
Leu
CAA
[ENA]
¡û
>W1610503993
FLOE01000003
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
119654
119738
+
Leu
CAA
[ENA]
¡û
>W1610504057
FLOE01000022
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
204869
204785
-
Leu
CAA
[ENA]
¡û
>W1710496510
FLOB01000002
Gammaproteobacteria
Marinomonas spartinae [FLOB]
569433
569349
-
Leu
CAA
[ENA]
¡û
>W1710496512
FLOB01000003
Gammaproteobacteria
Marinomonas spartinae [FLOB]
165961
166045
+
Leu
CAA
[ENA]
¡û
>W1710583977
FQVF01000014
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
81288
81204
-
Leu
CAA
[ENA]
¡û
>W1710583988
FQVF01000020
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
38674
38590
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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