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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105913 (86 seq.)
>W1711078786
LSNE01000002
Gammaproteobacteria
Paraglaciecola hydrolytica S66 [LSNE]
237789
237705
-
Leu
TAG
[ENA]
¡û
>C012997
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
2683321
2683405
+
Leu
TAG
[Ensembl]
¡û
>WENV013768
AACY020378805
Marine microbial communities from Global Ocean Sampling (GOS)
1812
1726
-
Leu
TAG
[ENA]
>WENV013771
AACY020378805
Marine microbial communities from Global Ocean Sampling (GOS)
2137
2053
-
Leu
TAG
[ENA]
>WENV180042154
LNFX01001080
[LNFX] marine sediment metagenome; antarctic beach sand mud
847
763
-
Leu
TAG
[ENA]
¡û
>WENV181233530
OFET01000002
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
362359
362275
-
Leu
TAG
[ENA]
¡û
>WENV181234187
OFEU01000002
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
362359
362275
-
Leu
TAG
[ENA]
¡û
>W141191380
AYOZ01000005
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
73425
73341
-
Leu
TAG
[ENA]
¡û
>W141284670
JAMB01000002
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
78727
78811
+
Leu
TAG
[ENA]
¡û
>WENV170655262
JTFN01015646
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
792
708
-
Leu
TAG
[ENA]
¡û
>WENV170656277
JTFO01008238
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1147
1231
+
Leu
TAG
[ENA]
¡û
>WENV170875831
MDTC01029540
[MDTC] marine metagenome; seawater
6339
6420
+
Leu
TAG
[ENA]
¡û
>C191039798
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2179859
2179943
+
Leu
TAG
-
¡û
>W09106438
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
214719
214803
+
Leu
TAG
[ENA]
¡û
>W141802156
JPER01000001
Gammaproteobacteria
Pseudidiomarina salinarum [JPER]
497413
497329
-
Leu
TAG
[ENA]
¡û
>W1910584855
JYBL01000033
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
15254
15170
-
Leu
TAG
[ENA]
¡û
>W1910914886
NHTT01000012
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
48604
48688
+
Leu
TAG
[ENA]
¡û
>W1911585096
PIPQ01000001
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
325134
325050
-
Leu
TAG
[ENA]
¡û
>W1810606245
QGOK01000015
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
41629
41713
+
Leu
TAG
[ENA]
¡û
>W1810609079
QGTT01000001
Gammaproteobacteria
Pseudidiomarina maritima 125B1 [QGTT]
99853
99937
+
Leu
TAG
[ENA]
¡û
>W1810625213
QHJF01000005
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
42132
42216
+
Leu
TAG
[ENA]
¡û
>W1810676256
QKLW01000002
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
39560
39644
+
Leu
TAG
[ENA]
¡û
>W1810705105
QMIL01000003
Gammaproteobacteria
Aliidiomarina celeris F3105 [QMIL]
173492
173408
-
Leu
TAG
[ENA]
¡û
>W1810720334
QNRF01000005
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
142296
142212
-
Leu
TAG
[ENA]
¡û
>W1810721711
QNSE01000011
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
160744
160660
-
Leu
TAG
[ENA]
¡û
>W1810721843
QNSG01000001
Gammaproteobacteria
Pseudidiomarina tainanensis 125Bg [QNSG]
215298
215214
-
Leu
TAG
[ENA]
¡û
>W1810758897
QPJA01000001
Gammaproteobacteria
Pseudidiomarina tainanensis 86_o [QPJA]
215326
215242
-
Leu
TAG
[ENA]
¡û
>W1810759731
QPJQ01000032
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
45428
45512
+
Leu
TAG
[ENA]
¡û
>W1810789572
QRHA01000001
Gammaproteobacteria
Alteromonas aestuariivivens KCTC 52655 [QRHA]
540110
540194
+
Leu
TAG
[ENA]
¡û
>W1810789595
QRHA01000009
Gammaproteobacteria
Alteromonas aestuariivivens KCTC 52655 [QRHA]
15763
15847
+
Leu
TAG
[ENA]
¡û
>W1810885385
QUNG01000019
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
39010
39094
+
Leu
TAG
[ENA]
¡û
>W2010582659
JAAZST010000050
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG7 [JAAZST]
15330
15414
+
Leu
TAG
[ENA]
¡û
>W2010582684
JAAZSU010000051
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG6 [JAAZSU]
5528
5444
-
Leu
TAG
[ENA]
¡û
>W2010582688
JAAZSV010000025
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG5 [JAAZSV]
102
186
+
Leu
TAG
[ENA]
¡û
>W2010582691
JAAZSV010000025
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG5 [JAAZSV]
431
515
+
Leu
TAG
[ENA]
¡û
>W2010582693
JAAZSV010000025
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG5 [JAAZSV]
23447
23363
-
Leu
TAG
[ENA]
¡û
>W2010582696
JAAZSV010000025
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG5 [JAAZSV]
23118
23034
-
Leu
TAG
[ENA]
¡û
>W2010582722
JAAZSW010000072
Gammaproteobacteria
Alteromonadaceae bacterium A_SAG4 [JAAZSW]
154
70
-
Leu
TAG
[ENA]
¡û
>W2010584362
JABAEK010000001
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
182014
181930
-
Leu
TAG
[ENA]
¡û
>W2010764358
JYBL01000033
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
15254
15170
-
Leu
TAG
[ENA]
¡û
>W2010967746
NHTT01000012
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
48604
48688
+
Leu
TAG
[ENA]
¡û
>W2011194489
PIPQ01000001
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
325134
325050
-
Leu
TAG
[ENA]
¡û
>W2011195126
PIQD01000001
Gammaproteobacteria
Idiomarina salinarum ISL-52 [PIQD]
872478
872562
+
Leu
TAG
[ENA]
¡û
>W2011222057
PTXN01000008
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
268666
268582
-
Leu
TAG
[ENA]
¡û
>W2011431074
RIZG01000007
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
143020
142936
-
Leu
TAG
[ENA]
¡û
>W2011611872
SJSB01000004
Gammaproteobacteria
Marinomonas sp. JHZ-47 [SJSB]
260410
260326
-
Leu
TAG
[ENA]
¡û
>W2011611972
SJSC01000005
Gammaproteobacteria
Marinomonas sp. KMM3893 [SJSC]
48012
48096
+
Leu
TAG
[ENA]
¡û
>W2012132143
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
1522912
1522828
-
Leu
TAG
[ENA]
¡û
>W2012353443
WJRP01000002
Gammaproteobacteria
Idiomarina sp. FeN1w [WJRP]
27621
27705
+
Leu
TAG
[ENA]
¡û
>W2012353493
WJRQ01000001
Gammaproteobacteria
Idiomarina sp. FenA--70 [WJRQ]
27621
27705
+
Leu
TAG
[ENA]
¡û
>W2012353557
WJRR01000002
Gammaproteobacteria
Idiomarina sp. FenBw--71 [WJRR]
27621
27705
+
Leu
TAG
[ENA]
¡û
>W2110030191
BMLJ01000003
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
258795
258711
-
Leu
TAG
[ENA]
¡û
>W2110286862
JACYFC010000003
Gammaproteobacteria
Marinomonas colpomeniae SM2066 [JACYFC]
530116
530032
-
Leu
TAG
[ENA]
¡û
>W2110428849
JAEMNX010000008
Gammaproteobacteria
Marinomonas sp. C1424 [JAEMNX]
84666
84582
-
Leu
TAG
[ENA]
¡û
>W2110429663
JAEMUI010000027
Gammaproteobacteria
Marinomonas spartinae USM8 [JAEMUI]
42937
42853
-
Leu
TAG
[ENA]
¡û
>W2110430194
JAEMVI010000003
Gammaproteobacteria
Alteromonas macleodii MW7 [JAEMVI]
168456
168372
-
Leu
TAG
[ENA]
¡û
>W2110430196
JAEMVI010000003
Gammaproteobacteria
Alteromonas macleodii MW7 [JAEMVI]
168256
168172
-
Leu
TAG
[ENA]
¡û
>W2110430199
JAEMVI010000003
Gammaproteobacteria
Alteromonas macleodii MW7 [JAEMVI]
167930
167846
-
Leu
TAG
[ENA]
¡û
>W2110430217
JAEMVI010000015
Gammaproteobacteria
Alteromonas macleodii MW7 [JAEMVI]
40246
40162
-
Leu
TAG
[ENA]
¡û
>W2110571015
JAGSSV010000002
Gammaproteobacteria
Marinomonas vulgaris A79 [JAGSSV]
280625
280541
-
Leu
TAG
[ENA]
¡û
>W2110593514
JAHCTA010000002
Gammaproteobacteria
Alteromonas sp. SM 2104 [JAHCTA]
408685
408769
+
Leu
TAG
[ENA]
¡û
>W2110593545
JAHCTA010000012
Gammaproteobacteria
Alteromonas sp. SM 2104 [JAHCTA]
82635
82551
-
Leu
TAG
[ENA]
¡û
>W2110617703
JAHLLW010000008
Gammaproteobacteria
Marinomonas sp. E165 [JAHLLW]
143863
143779
-
Leu
TAG
[ENA]
¡û
>C211125394
CP059888
Gammaproteobacteria
Pseudoalteromonas sp. SM1988 [CP059888]
1492910
1492994
+
Leu
TAG
-
¡û
>C211125407
CP059888
Gammaproteobacteria
Pseudoalteromonas sp. SM1988 [CP059888]
2913159
2913243
+
Leu
TAG
-
¡û
>C211125410
CP059888
Gammaproteobacteria
Pseudoalteromonas sp. SM1988 [CP059888]
2913481
2913565
+
Leu
TAG
-
¡û
>C211142048
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
1947903
1947819
-
Leu
TAG
-
¡û
>C211155537
CP061941
Gammaproteobacteria
Marinomonas algicola SM1966 [CP061941]
1541727
1541643
-
Leu
TAG
-
¡û
>C211273555
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
273891
273975
+
Leu
TAG
-
¡û
>W2110716852
JAJATW010000001
Gammaproteobacteria
Marinomonas sp. E8 [JAJATW]
268772
268856
+
Leu
TAG
[ENA]
¡û
>C231129693
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
35396
35480
+
Leu
TAG
-
¡û
>C231130905
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
2308024
2308108
+
Leu
TAG
-
¡û
>C231135979
CP074112
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074112]
1393628
1393712
+
Leu
TAG
-
¡û
>C241010814
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
1487938
1487854
-
Leu
TAG
-
¡û
>C241166607
CP054301
Gammaproteobacteria
Marinomonas primoryensis MPKMM3633 [CP054301]
1902796
1902712
-
Leu
TAG
-
¡û
>C11115026
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
2110987
2111071
+
Leu
TAG
[Ensembl]
¡û
>C161107809
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
1835697
1835613
-
Leu
TAG
-
¡û
>W1610503720
FLOB01000008
Gammaproteobacteria
Marinomonas spartinae [FLOB]
163877
163961
+
Leu
TAG
[ENA]
¡û
>W1610504007
FLOE01000016
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
30691
30775
+
Leu
TAG
[ENA]
¡û
>W1610540067
JSEE01000016
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
48475
48391
-
Leu
TAG
[ENA]
¡û
>W1610629356
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
362267
362183
-
Leu
TAG
[ENA]
¡û
>W1710496549
FLOB01000008
Gammaproteobacteria
Marinomonas spartinae [FLOB]
163877
163961
+
Leu
TAG
[ENA]
¡û
>W1710509871
FMXN01000005
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
25139
25055
-
Leu
TAG
[ENA]
¡û
>W1710583996
FQVF01000026
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
16415
16331
-
Leu
TAG
[ENA]
¡û
>W1710643088
JSEE01000016
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
48475
48391
-
Leu
TAG
[ENA]
¡û
>W1710760495
LIHO01000009
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
362267
362183
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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