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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105933 (88 seq.)
>W1710809840
LKFB01000005
Betaproteobacteria
Comamonas thiooxydans [LKFB]
49003
48919
-
Leu
GAG
[ENA]
¡û
>W1710944106
LOQE01000001
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
169620
169536
-
Leu
GAG
[ENA]
¡û
>W1710990950
LPXH01000034
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
170082
170166
+
Leu
GAG
[ENA]
¡û
>W1711135991
LUZR01000066
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
19942
19858
-
Leu
GAG
[ENA]
¡û
>W1711268806
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
522971
523055
+
Leu
GAG
[ENA]
¡û
>W1711504511
MKUQ01000010
Betaproteobacteria
Burkholderiales bacterium 70-64 [MKUQ]
181614
181530
-
Leu
GAG
[ENA]
¡û
>W1711628354
MPOE01000005
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
235390
235474
+
Leu
GAG
[ENA]
¡û
>W1711628478
MPOF01000035
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
234937
235021
+
Leu
GAG
[ENA]
¡û
>W131178092
ARLH01000085
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
54377
54293
-
Leu
GAG
[ENA]
¡û
>W1712110544
NJIH01000010
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
70768
70684
-
Leu
GAG
[ENA]
¡û
>C171098264
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
1068367
1068283
-
Leu
GAG
-
¡û
>C171103242
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
2547860
2547944
+
Leu
GAG
-
¡û
>C171104909
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
376817
376733
-
Leu
GAG
-
¡û
>w019685
AAUJ01000005
Betaproteobacteria
Comamonas testosteroni KF-1 [AAUJ]
517266
517350
+
Leu
GAG
[ENA]
¡û
>WENV180103086
OAPA01001601
[OAPA] marine metagenome; ENVO:00002010
910
826
-
Leu
GAG
[ENA]
¢þ
>WENV180114280
OAPS01002566
[OAPS] marine metagenome; sea water
1069
1153
+
Leu
GAG
[ENA]
¢þ
>WENV180283827
OBID01003835
[OBID] metagenome; sludge
1193
1277
+
Leu
GAG
[ENA]
¢þ
>WENV180360827
OBNU01032777
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
36
120
+
Leu
GAG
[ENA]
¢þ
>WENV180369101
OBOG01025507
[OBOG] marine metagenome; seawater
488
404
-
Leu
GAG
[ENA]
¢þ
>WENV180377459
OBON01026660
[OBON] marine metagenome; sea water
645
561
-
Leu
GAG
[ENA]
¢þ
>WENV181231903
OFEK01084741
[OFEK] activated sludge metagenome; Anaerobic digester
320
404
+
Leu
GAG
[ENA]
¢þ
>WENV181311492
OFJB01003002
[OFJB] sludge metagenome; sludge
2672
2588
-
Leu
GAG
[ENA]
¢þ
>WENV181311566
OFJB01004582
[OFJB] sludge metagenome; sludge
3489
3573
+
Leu
GAG
[ENA]
¢þ
>WENV181411007
OGCI01010407
[OGCI] hot springs metagenome; Hot spring water
1667
1583
-
Leu
GAG
[ENA]
¢þ
>W141139309
AWNL01000051
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
986
902
-
Leu
GAG
[ENA]
¡û
>WENV181414192
OGCL01000088
[OGCL] hot springs metagenome; Hot spring water
84774
84858
+
Leu
GAG
[ENA]
¢þ
>WENV181415375
OGCL01009377
[OGCL] hot springs metagenome; Hot spring water
2959
2875
-
Leu
GAG
[ENA]
¢þ
>WENV181944674
OGZA01008237
[OGZA] human gut metagenome; faeces
2214
2130
-
Leu
GAG
[ENA]
¢þ
>W141238238
BBJZ01000006
Betaproteobacteria
Comamonas testosteroni [BBJZ]
163127
163043
-
Leu
GAG
[ENA]
¡û
>WENV182578770
OJGP01002171
[OJGP] seawater metagenome; Sea water
2428
2344
-
Leu
GAG
[ENA]
¢þ
>W141277445
JAEP01000003
Betaproteobacteria
Bordetella petrii J51 [JAEP]
198068
197984
-
Leu
GAG
[ENA]
¡û
>WENV183678596
ORJL011898552
[ORJL] groundwater metagenome; groundwater
1442
1358
-
Leu
GAG
[ENA]
¢þ
>ENV08000754
ABMI01078031
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
103
19
-
Leu
GAG
[ENA]
¡û
>WENV183710166
PDWI01040915
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2386
2302
-
Leu
GAG
[ENA]
¢þ
>WENV183741211
PJUF01057821
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
265
181
-
Leu
GAG
[ENA]
¢þ
>WENV170018719
BBPD01000496
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
47475
47391
-
Leu
GAG
[ENA]
¢þ
>WENV170019808
BBPE01000709
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
24338
24254
-
Leu
GAG
[ENA]
¢þ
>WENV170652826
JRYH01038928
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
959
1043
+
Leu
GAG
[ENA]
¢þ
>WENV170688688
LFRM01258042
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
444
528
+
Leu
GAG
[ENA]
¢þ
>C181169423
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
2326071
2325987
-
Leu
GAG
-
¡û
>C191004286
AP018718
Betaproteobacteria
Sulfuricystis multivorans J5B [AP018718]
1216701
1216785
+
Leu
GAG
-
¡û
>C191007515
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
1185285
1185369
+
Leu
GAG
-
¡û
>C191012245
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3344392
3344308
-
Leu
GAG
-
¡û
>C191116577
CP033936
Betaproteobacteria
Kerstersia gyiorum SWMUKG01 [CP033936]
1819443
1819527
+
Leu
GAG
-
¡û
>W1910890545
NEVI01000005
Betaproteobacteria
Bordetella genomosp. 7 7 AU23756 [NEVI]
204868
204952
+
Leu
GAG
[ENA]
¡û
>W1910890850
NEVO01000004
Betaproteobacteria
Bordetella genomosp. 4 4 AU14378 [NEVO]
240899
240983
+
Leu
GAG
[ENA]
¡û
>W1910890958
NEVQ01000008
Betaproteobacteria
Bordetella genomosp. 4 4 AU9919 [NEVQ]
131742
131826
+
Leu
GAG
[ENA]
¡û
>W1911701428
QNUI01000019
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
16926
17010
+
Leu
GAG
[ENA]
¡û
>W1911702176
QOAZ01000005
Betaproteobacteria
Azohydromonas sediminis SYSU G00088 [QOAZ]
68896
68980
+
Leu
GAG
[ENA]
¡û
>W1810062094
PDNV01000006
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
327727
327643
-
Leu
GAG
[ENA]
¡û
>W1810273273
PSNX01000009
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
53807
53723
-
Leu
GAG
[ENA]
¡û
>W1810580244
QETA01000001
Betaproteobacteria
Corticimicrobacter populi 3d-2-2 [QETA]
271469
271553
+
Leu
GAG
[ENA]
¡û
>W1810889228
QURR01000011
Betaproteobacteria
Comamonas testosteroni SWCO2 [QURR]
6845
6929
+
Leu
GAG
[ENA]
¡û
>SRA1052245
SRR035098.166590
454 Sequencing (SRP001819)
61
145
+
Leu
GAG
[SRA]
>SRA1052587
SRR035098.232658
454 Sequencing (SRP001819)
61
145
+
Leu
GAG
[SRA]
>SRA1053326
SRR035098.382825
454 Sequencing (SRP001819)
418
502
+
Leu
GAG
[SRA]
>ENV09004077
ADIG01005316
Groundwater metagenome 4000601.lucy.pga.C1
555
639
+
Leu
GAG
[ENA]
¡û
>W1510015191
BBQP01000003
Betaproteobacteria
Comamonas testosteroni KF712 [BBQP]
303288
303372
+
Leu
GAG
[ENA]
¡û
>W1510019158
BBVD01000001
Betaproteobacteria
Comamonas thiooxydans DSM 17888 [BBVD]
160511
160427
-
Leu
GAG
[ENA]
¡û
>W10119385
ADVQ01000036
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
100416
100500
+
Leu
GAG
[ENA]
¡û
>W1511403227
JTKY01000029
Betaproteobacteria
Tepidimonas taiwanensis VT154-175 [JTKY]
55205
55121
-
Leu
GAG
[ENA]
¡û
>W11125605
ADVQ01000036
Betaproteobacteria
Comamonas thiooxydans S44 [ADVQ]
100416
100500
+
Leu
GAG
[ENA]
¡û
>W1511584168
LAVC01000013
Betaproteobacteria
Comamonas thiooxydans KY3 [LAVC]
103585
103669
+
Leu
GAG
[ENA]
¡û
>W121123601
BAEC01000102
Betaproteobacteria
Comamonas testosteroni NBRC 100989 [BAEC]
157760
157676
-
Leu
GAG
[ENA]
¡û
>W1610028401
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
684190
684274
+
Leu
GAG
[ENA]
¡û
>W1610028858
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
250868
250952
+
Leu
GAG
[ENA]
¡û
>W1610074137
BCWK01000017
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
18373
18457
+
Leu
GAG
[ENA]
¡û
>W1610085434
CTRJ01000012
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
229427
229511
+
Leu
GAG
[ENA]
¡û
>W1610085528
CTRL01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
84821
84737
-
Leu
GAG
[ENA]
¡û
>W1610085578
CTRM01000059
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
235266
235182
-
Leu
GAG
[ENA]
¡û
>W1610447539
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
33427
33343
-
Leu
GAG
[ENA]
¡û
>W1610447645
FKBT01000025
Betaproteobacteria
Bordetella trematum [FKBT]
150193
150277
+
Leu
GAG
[ENA]
¡û
>C131007298
CP003805
Betaproteobacteria
Candidatus Kinetoplastibacterium oncopeltii TCC290E [CP003805]
551930
551846
-
Leu
GAG
[Ensembl]
¡û
>W1610610000
LFYP01000125
Betaproteobacteria
Comamonas kerstersii [LFYP]
36097
36013
-
Leu
GAG
[ENA]
¡û
>W1610673895
LKFB01000005
Betaproteobacteria
Comamonas thiooxydans [LKFB]
49003
48919
-
Leu
GAG
[ENA]
¡û
>W1610800406
LOQE01000001
Betaproteobacteria
Tepidimonas taiwanensis [LOQE]
169620
169536
-
Leu
GAG
[ENA]
¡û
>W1610845622
LPXH01000034
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
170082
170166
+
Leu
GAG
[ENA]
¡û
>W1610947111
LUZR01000066
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
19942
19858
-
Leu
GAG
[ENA]
¡û
>W1611029618
LZDH01000056
Betaproteobacteria
Tepidimonas fonticaldi [LZDH]
522971
523055
+
Leu
GAG
[ENA]
¡û
>W1710024303
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
684190
684274
+
Leu
GAG
[ENA]
¡û
>W1710026228
AWTN01000084
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTN]
250868
250952
+
Leu
GAG
[ENA]
¡û
>W1710071255
BCWK01000017
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
18373
18457
+
Leu
GAG
[ENA]
¡û
>W1710090023
CTRJ01000012
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
229427
229511
+
Leu
GAG
[ENA]
¡û
>W1710090117
CTRL01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
84821
84737
-
Leu
GAG
[ENA]
¡û
>W1710090167
CTRM01000059
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
235266
235182
-
Leu
GAG
[ENA]
¡û
>W1710447167
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
33427
33343
-
Leu
GAG
[ENA]
¡û
>W1710447273
FKBT01000025
Betaproteobacteria
Bordetella trematum [FKBT]
150193
150277
+
Leu
GAG
[ENA]
¡û
>W1710731345
LFYP01000125
Betaproteobacteria
Comamonas kerstersii [LFYP]
36097
36013
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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