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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105992 (74 seq.)
>WENV180199094
OBAE01000007
[OBAE] human gut metagenome; human gut
116442
116359
-
Leu
TAG
[ENA]
¡û
>WENV180202401
OBAG01000084
[OBAG] human gut metagenome; human gut
116507
116424
-
Leu
TAG
[ENA]
¡û
>WENV180323646
OBKR01053652
[OBKR] human gut metagenome; feces
352
435
+
Leu
TAG
[ENA]
¡û
>WENV180537002
OCHN01084786
[OCHN] human gut metagenome; human gut
436
353
-
Leu
TAG
[ENA]
¡û
>WENV180748503
ODHN01239399
[ODHN] human metagenome; G_DNA_Stool
99
182
+
Leu
TAG
[ENA]
¡û
>WENV180770216
ODIH01000044
[ODIH] human metagenome; G_DNA_Stool
150805
150722
-
Leu
TAG
[ENA]
¡û
>WENV180940725
ODTZ01000518
[ODTZ] human metagenome; G_DNA_Stool
20179
20262
+
Leu
TAG
[ENA]
¡û
>WENV180971812
ODUU01098913
[ODUU] human metagenome; G_DNA_Stool
526
443
-
Leu
TAG
[ENA]
¡û
>WENV181053743
ODYI01000603
[ODYI] human metagenome; G_DNA_Stool
281
364
+
Leu
TAG
[ENA]
¡û
>WENV181060492
ODYN01000019
[ODYN] human metagenome; G_DNA_Stool
115715
115632
-
Leu
TAG
[ENA]
¡û
>WENV181099810
OECI01014647
[OECI] human metagenome; G_DNA_Stool
1035
952
-
Leu
TAG
[ENA]
¡û
>WENV181365608
OFPS01000043
[OFPS] human gut metagenome; human gut
602
685
+
Leu
TAG
[ENA]
¡û
>WENV181395919
OFSC01000021
[OFSC] human gut metagenome; human gut
151172
151089
-
Leu
TAG
[ENA]
¡û
>WENV181444943
OGDS01000263
[OGDS] metagenome; Human gut stool
58483
58400
-
Leu
TAG
[ENA]
¡û
>WENV181459647
OGEL01000263
[OGEL] metagenome; Human gut stool
58483
58400
-
Leu
TAG
[ENA]
¡û
>WENV181468689
OGES01006620
[OGES] metagenome; Human gut stool
4379
4296
-
Leu
TAG
[ENA]
¡û
>WENV181479247
OGFG01001291
[OGFG] metagenome; Human gut stool
25201
25118
-
Leu
TAG
[ENA]
¡û
>WENV181557620
OGIV01055918
[OGIV] metagenome; Human gut stool
347
264
-
Leu
TAG
[ENA]
¡û
>WENV181583280
OGKD01001020
[OGKD] metagenome; Human gut stool
12233
12316
+
Leu
TAG
[ENA]
¡û
>WENV181601093
OGLE01006189
[OGLE] metagenome; Human gut stool
4528
4445
-
Leu
TAG
[ENA]
¡û
>WENV181603304
OGLI01000005
[OGLI] metagenome; Human gut stool
174949
175032
+
Leu
TAG
[ENA]
¡û
>WENV181625890
OGML01003584
[OGML] metagenome; Human gut stool
9404
9321
-
Leu
TAG
[ENA]
¡û
>WENV181630953
OGMR01000121
[OGMR] metagenome; Human gut stool
612
695
+
Leu
TAG
[ENA]
¡û
>WENV181632269
OGMT01003973
[OGMT] metagenome; Human gut stool
490
573
+
Leu
TAG
[ENA]
¡û
>WENV181640526
OGNF01000087
[OGNF] metagenome; Human gut stool
546
629
+
Leu
TAG
[ENA]
¡û
>WENV181647423
OGNQ01000008
[OGNQ] metagenome; Human gut stool
13737
13820
+
Leu
TAG
[ENA]
¡û
>WENV181668801
OGOL01004303
[OGOL] human gut metagenome; faeces
8510
8427
-
Leu
TAG
[ENA]
¡û
>WENV181684975
OGOV01053597
[OGOV] human gut metagenome; faeces
54
137
+
Leu
TAG
[ENA]
¡û
>WENV181699428
OGPF01056346
[OGPF] human gut metagenome; faeces
4
87
+
Leu
TAG
[ENA]
¡û
>WENV181736960
OGQH01003707
[OGQH] human gut metagenome; faeces
7948
7865
-
Leu
TAG
[ENA]
¡û
>WENV181787780
OGRO01000063
[OGRO] human gut metagenome; faeces
109198
109115
-
Leu
TAG
[ENA]
¡û
>WENV181828757
OGUN01001676
[OGUN] human gut metagenome; faeces
12831
12748
-
Leu
TAG
[ENA]
¡û
>WENV181921757
OGYK01000312
[OGYK] human gut metagenome; faeces
40226
40143
-
Leu
TAG
[ENA]
¡û
>WENV181941178
OGYY01001352
[OGYY] human gut metagenome; faeces
21169
21086
-
Leu
TAG
[ENA]
¡û
>WENV181942909
OGYZ01001922
[OGYZ] human gut metagenome; faeces
14889
14806
-
Leu
TAG
[ENA]
¡û
>WENV182050583
OHEF01000161
[OHEF] human gut metagenome; feces
52042
51959
-
Leu
TAG
[ENA]
¡û
>WENV182056706
OHEN01002818
[OHEN] human gut metagenome; feces
4309
4226
-
Leu
TAG
[ENA]
¡û
>WENV182083927
OHGQ01000017
[OHGQ] human gut metagenome; feces
1291
1374
+
Leu
TAG
[ENA]
¡û
>WENV182146967
OHLB01000188
[OHLB] human gut metagenome; feces
478
561
+
Leu
TAG
[ENA]
¡û
>WENV182216826
OHQO01000053
[OHQO] human gut metagenome; feces
34691
34774
+
Leu
TAG
[ENA]
¡û
>WENV182234726
OHRS01000109
[OHRS] human gut metagenome; feces
69762
69679
-
Leu
TAG
[ENA]
¡û
>WENV182242388
OHSH01000008
[OHSH] human gut metagenome; feces
152887
152804
-
Leu
TAG
[ENA]
¡û
>WENV182287780
OHVT01000004
[OHVT] human gut metagenome; feces
173996
174079
+
Leu
TAG
[ENA]
¡û
>WENV182300886
OHWR01000014
[OHWR] human gut metagenome; feces
153936
153853
-
Leu
TAG
[ENA]
¡û
>WENV182366581
OICL01000004
[OICL] human gut metagenome; feces
65804
65721
-
Leu
TAG
[ENA]
¡û
>WENV182413612
OIFY01003293
[OIFY] human gut metagenome; human gut
187
270
+
Leu
TAG
[ENA]
¡û
>WENV182522053
OIWS01000034
[OIWS] human gut metagenome; faeces
602
685
+
Leu
TAG
[ENA]
¡û
>WENV182599261
OJJE01002223
[OJJE] metagenome; faeces
1700
1617
-
Leu
TAG
[ENA]
¡û
>WENV182615689
OJKC01006340
[OJKC] metagenome; faeces
3490
3407
-
Leu
TAG
[ENA]
¡û
>WENV182655621
OJMI01060652
[OJMI] human gut metagenome; feces
730
813
+
Leu
TAG
[ENA]
¡û
>WENV182656725
OJMJ01047015
[OJMJ] human gut metagenome; feces
199
116
-
Leu
TAG
[ENA]
¡û
>WENV182921399
OKUC01000006
[OKUC] human gut metagenome; feces
64784
64701
-
Leu
TAG
[ENA]
¡û
>WENV182956616
OKWF01001303
[OKWF] human gut metagenome; human gut
2995
2912
-
Leu
TAG
[ENA]
¡û
>WENV182967556
OKXB01000035
[OKXB] human gut metagenome; human gut
4556
4639
+
Leu
TAG
[ENA]
¡û
>WENV183029231
OLFW01000050
[OLFW] human gut metagenome; faeces
103226
103309
+
Leu
TAG
[ENA]
¡û
>WENV183071673
OLIS01027135
[OLIS] human gut metagenome; feces
444
527
+
Leu
TAG
[ENA]
¡û
>WENV183078701
OLIX01003485
[OLIX] human gut metagenome; feces
231
314
+
Leu
TAG
[ENA]
¡û
>WENV183153352
OLOR01000025
[OLOR] human gut metagenome; faeces
393
476
+
Leu
TAG
[ENA]
¡û
>WENV183190049
OLPR01000003
[OLPR] human gut metagenome; faeces
160208
160291
+
Leu
TAG
[ENA]
¡û
>WENV183212903
OLQD01011445
[OLQD] human gut metagenome; faeces
505
588
+
Leu
TAG
[ENA]
¡û
>WENV183258812
OLRO01000018
[OLRO] human gut metagenome; faeces
189418
189335
-
Leu
TAG
[ENA]
¡û
>WENV183321347
OLVW01017317
[OLVW] human gut metagenome; faeces
505
588
+
Leu
TAG
[ENA]
¡û
>WENV183379765
OLYC01096588
[OLYC] human gut metagenome; feces
485
402
-
Leu
TAG
[ENA]
¡û
>WENV183462892
OMDX01002186
[OMDX] human gut metagenome; feces
692
775
+
Leu
TAG
[ENA]
¡û
>WENV183570013
OOCC01018201
[OOCC] human gut metagenome; human gut
735
652
-
Leu
TAG
[ENA]
¡û
>WENV183573564
OOCH01000225
[OOCH] human gut metagenome; human gut
63590
63507
-
Leu
TAG
[ENA]
¡û
>WENV183575776
OOCI01007710
[OOCI] human gut metagenome; human gut
4
87
+
Leu
TAG
[ENA]
¡û
>WENV183579065
OOCM01000086
[OOCM] human gut metagenome; human gut
10730
10813
+
Leu
TAG
[ENA]
¡û
>WENV183594091
OODB01004032
[OODB] human gut metagenome; human gut
557
640
+
Leu
TAG
[ENA]
¡û
>WENV170034187
CDYK01041695
[CDYK] gut metagenome; human stools
149706
149623
-
Leu
TAG
[ENA]
¡û
>W1810875269
QUFV01000001
Bacillota
Clostridium sp. AF23-8 [QUFV]
1318289
1318372
+
Leu
TAG
[ENA]
¡û
>W1810878800
QUIL01000001
Bacillota
Clostridium sp. AM42-36 [QUIL]
188876
188793
-
Leu
TAG
[ENA]
¡û
>W1810882223
QUKW01000002
Bacillota
Clostridium sp. OM08-29 [QUKW]
153743
153660
-
Leu
TAG
[ENA]
¡û
>W2010257013
CABJCP020000001
Bacillota
Clostridiales bacterium [CABJCP]
1318289
1318372
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK