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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106047 (117 seq.)
>W1710862692
LMEO01000034
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
499715
499796
+
Leu
GAG
[ENA]
¡û
>W1710862698
LMEO01000045
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
1397067
1396986
-
Leu
GAG
[ENA]
¡û
>W1710879833
LMRY01000003
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
100915
100834
-
Leu
GAG
[ENA]
¡û
>W1710879845
LMRY01000011
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
360
441
+
Leu
GAG
[ENA]
¡û
>W1710880100
LMSD01000001
Bacillota
Paenibacillus sp. Soil750 [LMSD]
209266
209351
+
Leu
GAG
[ENA]
¡û
>W1710880103
LMSD01000003
Bacillota
Paenibacillus sp. Soil750 [LMSD]
408
489
+
Leu
GAG
[ENA]
¡û
>W1710880511
LMSJ01000044
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
442
523
+
Leu
GAG
[ENA]
¡û
>W1710880526
LMSJ01000054
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
82734
82649
-
Leu
GAG
[ENA]
¡û
>W1710880783
LMSP01000009
Bacillota
Paenibacillus sp. Soil787 [LMSP]
121028
120947
-
Leu
GAG
[ENA]
¡û
>W1710880835
LMSP01000034
Bacillota
Paenibacillus sp. Soil787 [LMSP]
467113
467032
-
Leu
GAG
[ENA]
¡û
>W1711252514
LYPB01000050
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
159232
159147
-
Leu
GAG
[ENA]
¡û
>W1711252544
LYPB01000061
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
59318
59237
-
Leu
GAG
[ENA]
¡û
>W1711252674
LYPC01000021
Bacillota
Paenibacillus pectinilyticus [LYPC]
315
396
+
Leu
GAG
[ENA]
¡û
>W1711252684
LYPC01000028
Bacillota
Paenibacillus pectinilyticus [LYPC]
265578
265493
-
Leu
GAG
[ENA]
¡û
>W131229645
AUGY01000139
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
6302
6383
+
Leu
GAG
[ENA]
¡û
>W131229687
AUGY01000222
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
298
379
+
Leu
GAG
[ENA]
¡û
>W1711338636
MBTG01000015
Bacillota
Paenibacillus ferrarius [MBTG]
177572
177491
-
Leu
GAG
[ENA]
¡û
>W1711338666
MBTG01000041
Bacillota
Paenibacillus ferrarius [MBTG]
46756
46675
-
Leu
GAG
[ENA]
¡û
>WENV170705813
LNAP01000374
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
52991
52910
-
Leu
GAG
[ENA]
¡û
>WENV170706302
LNAP01001925
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
366
447
+
Leu
GAG
[ENA]
¡û
>C191007168
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
3415974
3415893
-
Leu
GAG
-
¡û
>C191125216
CP034437
Bacillota
Paenibacillus albus 18JY67-1 [CP034437]
2356300
2356384
+
Leu
GAG
-
¡û
>W141564695
JIAZ01000005
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
464332
464417
+
Leu
GAG
[ENA]
¡û
>W141564717
JIAZ01000023
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
90638
90557
-
Leu
GAG
[ENA]
¡û
>W1910154515
BILU01000174
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
3317
3398
+
Leu
GAG
[ENA]
¡û
>W1910154536
BILU01000277
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
204
285
+
Leu
GAG
[ENA]
¡û
>W1910154605
BILW01000035
Bacillota
Paenibacillus chondroitinus NBRC 15376 [BILW]
11079
10994
-
Leu
GAG
[ENA]
¡û
>W1910831964
MYFO01000007
Bacillota
Paenibacillus sp. MEC069 [MYFO]
161937
162018
+
Leu
GAG
[ENA]
¡û
>W1810697190
QLUW01000003
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
538872
538956
+
Leu
GAG
[ENA]
¡û
>W1810860927
QTTN01000003
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
147561
147645
+
Leu
GAG
[ENA]
¡û
>W2010087450
BILU01000174
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
3317
3398
+
Leu
GAG
[ENA]
¡û
>W2010087471
BILU01000277
Bacillota
Paenibacillus alginolyticus DSM 5050 = NBRC 15375 [BILU]
204
285
+
Leu
GAG
[ENA]
¡û
>W2010087540
BILW01000035
Bacillota
Paenibacillus chondroitinus NBRC 15376 [BILW]
11079
10994
-
Leu
GAG
[ENA]
¡û
>W2010437646
JAAAMU010000005
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAAAMU]
440652
440568
-
Leu
GAG
[ENA]
¡û
>W2010437649
JAAAMU010000005
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAAAMU]
440148
440067
-
Leu
GAG
[ENA]
¡û
>W2010437741
JAAAMV010000019
Bacillota
Paenibacillus sp. T1 [JAAAMV]
107969
107885
-
Leu
GAG
[ENA]
¡û
>W2010473705
JAAIKC010000001
Bacillota
Paenibacillus sp. SYP-B3998 [JAAIKC]
1683
1764
+
Leu
GAG
[ENA]
¡û
>W2010473716
JAAIKC010000004
Bacillota
Paenibacillus sp. SYP-B3998 [JAAIKC]
260620
260701
+
Leu
GAG
[ENA]
¡û
>W2010534733
JAAOZR010000001
Bacillota
Paenibacillus aceris KACC 19194 [JAAOZR]
212716
212801
+
Leu
GAG
[ENA]
¡û
>W2010534838
JAAOZR010000094
Bacillota
Paenibacillus aceris KACC 19194 [JAAOZR]
334
415
+
Leu
GAG
[ENA]
¡û
>W2010610886
JABRUY010000006
Bacillota
Paenibacillus frigoriresistens LMG 31322 [JABRUY]
339577
339496
-
Leu
GAG
[ENA]
¡û
>W2010610983
JABRUY010000086
Bacillota
Paenibacillus frigoriresistens LMG 31322 [JABRUY]
373
454
+
Leu
GAG
[ENA]
¡û
>W2010682260
JACEID010000033
Bacillota
Paenibacillus sp. CGMCC 1.16610 [JACEID]
407410
407495
+
Leu
GAG
[ENA]
¡û
>W2010682263
JACEID010000038
Bacillota
Paenibacillus sp. CGMCC 1.16610 [JACEID]
16583
16502
-
Leu
GAG
[ENA]
¡û
>W2010716029
JACHXC010000011
Bacillota
Paenibacillus baekrokdamisoli CECT 8890 [JACHXC]
222308
222389
+
Leu
GAG
[ENA]
¡û
>W2010922084
MYFO01000007
Bacillota
Paenibacillus sp. MEC069 [MYFO]
161937
162018
+
Leu
GAG
[ENA]
¡û
>W2011496261
RXHU01000055
Bacillota
Paenibacillus whitsoniae MER 54 [RXHU]
63503
63418
-
Leu
GAG
[ENA]
¡û
>W2011496265
RXHU01000056
Bacillota
Paenibacillus whitsoniae MER 54 [RXHU]
38387
38302
-
Leu
GAG
[ENA]
¡û
>W2011580863
SHLX01000033
Bacillota
Paenibacillus sp. R196 [SHLX]
32983
32899
-
Leu
GAG
[ENA]
¡û
>W2011625694
SLZD01000002
Bacillota
Paenibacillus sp. BK736 [SLZD]
335881
335797
-
Leu
GAG
[ENA]
¡û
>W2012048539
VIWN01000003
Bacillota
Paenibacillus sp. 597 [VIWN]
264210
264125
-
Leu
GAG
[ENA]
¡û
>W2012048544
VIWN01000006
Bacillota
Paenibacillus sp. 597 [VIWN]
432544
432463
-
Leu
GAG
[ENA]
¡û
>W2012125961
VRTT01000093
Bacillota
Paenibacillus sp. N3.4 [VRTT]
409
490
+
Leu
GAG
[ENA]
¡û
>W2012328152
WHNY01000009
Bacillota
Paenibacillus sp. LMG 31461 [WHNY]
375
456
+
Leu
GAG
[ENA]
¡û
>W2012328189
WHNY01000060
Bacillota
Paenibacillus sp. LMG 31461 [WHNY]
393763
393848
+
Leu
GAG
[ENA]
¡û
>W2012328261
WHNZ01000017
Bacillota
Paenibacillus sp. LMG 31457 [WHNZ]
203543
203458
-
Leu
GAG
[ENA]
¡û
>W2012328325
WHNZ01000079
Bacillota
Paenibacillus sp. LMG 31457 [WHNZ]
110134
110053
-
Leu
GAG
[ENA]
¡û
>W2012328374
WHOA01000143
Bacillota
Paenibacillus sp. LMG 31458 [WHOA]
10252
10171
-
Leu
GAG
[ENA]
¡û
>W2012328394
WHOA01000231
Bacillota
Paenibacillus sp. LMG 31458 [WHOA]
25758
25673
-
Leu
GAG
[ENA]
¡û
>W2012328506
WHOC01000094
Bacillota
Paenibacillus sp. LMG 31460 [WHOC]
140253
140172
-
Leu
GAG
[ENA]
¡û
>W2012328550
WHOC01000183
Bacillota
Paenibacillus sp. LMG 31460 [WHOC]
201
286
+
Leu
GAG
[ENA]
¡û
>W2012426783
WSEM01000004
Bacillota
Paenibacillus anseongense MAH-34 [WSEM]
407410
407495
+
Leu
GAG
[ENA]
¡û
>W2012426840
WSEM01000022
Bacillota
Paenibacillus anseongense MAH-34 [WSEM]
16583
16502
-
Leu
GAG
[ENA]
¡û
>W2012437652
WTUZ01000020
Bacillota
Paenibacillus sp. 5J-6 [WTUZ]
260531
260446
-
Leu
GAG
[ENA]
¡û
>W2012437687
WTUZ01000037
Bacillota
Paenibacillus sp. 5J-6 [WTUZ]
173276
173195
-
Leu
GAG
[ENA]
¡û
>W2110024808
BMHE01000005
Bacillota
Paenibacillus marchantiophytorum CGMCC 1.15043 [BMHE]
205004
204923
-
Leu
GAG
[ENA]
¡û
>W2110024871
BMHE01000064
Bacillota
Paenibacillus marchantiophytorum CGMCC 1.15043 [BMHE]
35418
35337
-
Leu
GAG
[ENA]
¡û
>W2110024872
BMHE01000064
Bacillota
Paenibacillus marchantiophytorum CGMCC 1.15043 [BMHE]
19534
19453
-
Leu
GAG
[ENA]
¡û
>W2110275736
JACVVD010000002
Bacillota
Paenibacillus sp. WST5 [JACVVD]
365739
365820
+
Leu
GAG
[ENA]
¡û
>W2110275742
JACVVD010000005
Bacillota
Paenibacillus sp. WST5 [JACVVD]
394
475
+
Leu
GAG
[ENA]
¡û
>W2110460177
JAFBDP010000010
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAFBDP]
178744
178828
+
Leu
GAG
[ENA]
¡û
>W2110460180
JAFBDP010000010
Bacillota
Paenibacillus sacheonensis DSM 23054 [JAFBDP]
179248
179329
+
Leu
GAG
[ENA]
¡û
>W2110537314
JAGGDJ010000068
Bacillota
Paenibacillus sp. MWE-103 [JAGGDJ]
8299
8383
+
Leu
GAG
[ENA]
¡û
>W2110537317
JAGGDJ010000068
Bacillota
Paenibacillus sp. MWE-103 [JAGGDJ]
8902
8983
+
Leu
GAG
[ENA]
¡û
>W2110539155
JAGGKV010000012
Bacillota
Paenibacillus aceris DSM 24950 [JAGGKV]
212464
212549
+
Leu
GAG
[ENA]
¡û
>W2110539179
JAGGKV010000027
Bacillota
Paenibacillus aceris DSM 24950 [JAGGKV]
351
432
+
Leu
GAG
[ENA]
¡û
>W2110539415
JAGGLB010000017
Bacillota
Paenibacillus eucommiae DSM 26048 [JAGGLB]
56045
55964
-
Leu
GAG
[ENA]
¡û
>W2110560801
JAGKSP010000002
Bacillota
Paenibacillus sp. DLE-14 [JAGKSP]
281857
281776
-
Leu
GAG
[ENA]
¡û
>W2110560804
JAGKSP010000002
Bacillota
Paenibacillus sp. DLE-14 [JAGKSP]
279792
279711
-
Leu
GAG
[ENA]
¡û
>W2110664154
JAHZIK010000152
Bacillota
Paenibacillus sepulcri CCM 7311 [JAHZIK]
5130
5046
-
Leu
GAG
[ENA]
¡û
>C201213281
CP048286
Bacillota
Paenibacillus sp. 14171R-81 [CP048286]
1738153
1738072
-
Leu
GAG
-
¡û
>C201213284
CP048286
Bacillota
Paenibacillus sp. 14171R-81 [CP048286]
1737626
1737542
-
Leu
GAG
-
¡û
>C211375280
CP080269
Bacillota
R14(2021) [CP080269]
5457540
5457624
+
Leu
GAG
-
¡û
>C211375283
CP080269
Bacillota
R14(2021) [CP080269]
5458071
5458155
+
Leu
GAG
-
¡û
>C231287892
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
763943
764024
+
Leu
GAG
-
¡û
>C231287977
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
4596595
4596514
-
Leu
GAG
-
¡û
>C231491749
CP104467
Bacillota
Paenibacillus sp. SS4 [CP104467]
1769434
1769515
+
Leu
GAG
-
¡û
>C231491774
CP104467
Bacillota
Paenibacillus sp. SS4 [CP104467]
6589232
6589151
-
Leu
GAG
-
¡û
>C241293419
CP130319
Bacillota
Paenibacillus sp. MBLB1832 [CP130319]
1378135
1378220
+
Leu
GAG
-
¡û
>C241293456
CP130319
Bacillota
Paenibacillus sp. MBLB1832 [CP130319]
5017902
5017817
-
Leu
GAG
-
¡û
>C241306437
CP133017
Bacillota
Paenibacillus silvisoli TW38 [CP133017]
1795376
1795460
+
Leu
GAG
-
¡û
>C241306440
CP133017
Bacillota
Paenibacillus silvisoli TW38 [CP133017]
1795945
1796029
+
Leu
GAG
-
¡û
>W1511433041
JUGY01000008
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
80584
80665
+
Leu
GAG
[ENA]
¡û
>W1511433044
JUGY01000009
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
660
741
+
Leu
GAG
[ENA]
¡û
>W1610725038
LMEO01000034
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
499715
499796
+
Leu
GAG
[ENA]
¡û
>W1610725044
LMEO01000045
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
1397067
1396986
-
Leu
GAG
[ENA]
¡û
>W1610742179
LMRY01000003
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
100915
100834
-
Leu
GAG
[ENA]
¡û
>W1610742191
LMRY01000011
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
360
441
+
Leu
GAG
[ENA]
¡û
>W1610742446
LMSD01000001
Bacillota
Paenibacillus sp. Soil750 [LMSD]
209266
209351
+
Leu
GAG
[ENA]
¡û
>W1610742449
LMSD01000003
Bacillota
Paenibacillus sp. Soil750 [LMSD]
408
489
+
Leu
GAG
[ENA]
¡û
>W1610742857
LMSJ01000044
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
442
523
+
Leu
GAG
[ENA]
¡û
>W1610742872
LMSJ01000054
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
82734
82649
-
Leu
GAG
[ENA]
¡û
>W1610743129
LMSP01000009
Bacillota
Paenibacillus sp. Soil787 [LMSP]
121028
120947
-
Leu
GAG
[ENA]
¡û
>W1610743181
LMSP01000034
Bacillota
Paenibacillus sp. Soil787 [LMSP]
467113
467032
-
Leu
GAG
[ENA]
¡û
>W1611017302
LYPB01000050
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
159232
159147
-
Leu
GAG
[ENA]
¡û
>W1611017332
LYPB01000061
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
59318
59237
-
Leu
GAG
[ENA]
¡û
>W1611017462
LYPC01000021
Bacillota
Paenibacillus pectinilyticus [LYPC]
315
396
+
Leu
GAG
[ENA]
¡û
>W1611017472
LYPC01000028
Bacillota
Paenibacillus pectinilyticus [LYPC]
265578
265493
-
Leu
GAG
[ENA]
¡û
>W1710523715
FNIF01000002
Bacillota
Paenibacillus sp. yr247 [FNIF]
559273
559192
-
Leu
GAG
[ENA]
¡û
>W1710523804
FNIF01000050
Bacillota
Paenibacillus sp. yr247 [FNIF]
544
625
+
Leu
GAG
[ENA]
¡û
>W1710529259
FNNV01000018
Bacillota
Paenibacillus sp. CF384 [FNNV]
86222
86303
+
Leu
GAG
[ENA]
¡û
>W1710529262
FNNV01000018
Bacillota
Paenibacillus sp. CF384 [FNNV]
99561
99642
+
Leu
GAG
[ENA]
¡û
>W1710535966
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
2979195
2979114
-
Leu
GAG
[ENA]
¡û
>W1710565350
FORE01000007
Bacillota
Paenibacillus sp. UNC496MF [FORE]
205007
205091
+
Leu
GAG
[ENA]
¡û
>W1710565353
FORE01000007
Bacillota
Paenibacillus sp. UNC496MF [FORE]
205609
205690
+
Leu
GAG
[ENA]
¡û
>W1710576618
FPAD01000002
Bacillota
Paenibacillus sp. BC26 [FPAD]
335695
335614
-
Leu
GAG
[ENA]
¡û
>W1710576621
FPAD01000002
Bacillota
Paenibacillus sp. BC26 [FPAD]
322405
322324
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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