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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106064 (90 seq.)
>W1711066728
LSDD01000034
Fusobacteriota
Leptotrichia wadei [LSDD]
18135
18219
+
Leu
CAG
[ENA]
¡û
>W131167975
ARDS01000004
Fusobacteriota
Leptotrichia wadei DSM 19758 [ARDS]
65233
65149
-
Leu
CAG
[ENA]
¡û
>W131222039
AUAY01000019
Fusobacteriota
Leptotrichia hofstadii DSM 21651 [AUAY]
129547
129631
+
Leu
CAG
[ENA]
¡û
>WENV180005548
FLRW01092946
[FLRW] metagenome; saliva
99
183
+
Leu
CAG
[ENA]
¡û
>WENV180724788
ODGR01002767
[ODGR] human metagenome; G_DNA_Tongue dorsum
3898
3814
-
Leu
CAG
[ENA]
¡û
>WENV180727774
ODGU01011981
[ODGU] human metagenome; G_DNA_Supragingival plaque
3544
3460
-
Leu
CAG
[ENA]
¡û
>WENV180732904
ODGY01007655
[ODGY] human metagenome; G_DNA_Supragingival plaque
2050
1966
-
Leu
CAG
[ENA]
¡û
>WENV180733054
ODGY01018811
[ODGY] human metagenome; G_DNA_Supragingival plaque
1051
967
-
Leu
CAG
[ENA]
¡û
>WENV180733096
ODGY01023964
[ODGY] human metagenome; G_DNA_Supragingival plaque
461
545
+
Leu
CAG
[ENA]
¡û
>WENV180739164
ODHD01010925
[ODHD] human metagenome; G_DNA_Supragingival plaque
632
716
+
Leu
CAG
[ENA]
¡û
>WENV180757584
ODHW01000715
[ODHW] human metagenome; G_DNA_Tongue dorsum
13955
13871
-
Leu
CAG
[ENA]
¡û
>WENV180763286
ODIA01000444
[ODIA] human metagenome; G_DNA_Tongue dorsum
25747
25663
-
Leu
CAG
[ENA]
¡û
>WENV180766165
ODID01067788
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
88
172
+
Leu
CAG
[ENA]
¡û
>WENV180768302
ODIG01004766
[ODIG] human metagenome; G_DNA_Tongue dorsum
1800
1884
+
Leu
CAG
[ENA]
¡û
>WENV180773802
ODIJ01002395
[ODIJ] human metagenome; G_DNA_Tongue dorsum
210
126
-
Leu
CAG
[ENA]
¡û
>WENV180787573
ODIS01008758
[ODIS] human metagenome; G_DNA_Supragingival plaque
3329
3413
+
Leu
CAG
[ENA]
¡û
>WENV180792512
ODIW01000689
[ODIW] human metagenome; G_DNA_Tongue dorsum
22943
23027
+
Leu
CAG
[ENA]
¡û
>WENV180801066
ODJD01006834
[ODJD] human metagenome; G_DNA_Supragingival plaque
1497
1413
-
Leu
CAG
[ENA]
¡û
>WENV180801166
ODJD01011013
[ODJD] human metagenome; G_DNA_Supragingival plaque
134
218
+
Leu
CAG
[ENA]
¡û
>WENV180802328
ODJE01001162
[ODJE] human metagenome; G_DNA_Tongue dorsum
4107
4023
-
Leu
CAG
[ENA]
¡û
>WENV180809797
ODJK01048577
[ODJK] human metagenome; G_DNA_Subgingival plaque
286
370
+
Leu
CAG
[ENA]
¡û
>WENV180814403
ODJO01015509
[ODJO] human metagenome; G_DNA_Supragingival plaque
1169
1253
+
Leu
CAG
[ENA]
¡û
>WENV180814462
ODJO01017783
[ODJO] human metagenome; G_DNA_Supragingival plaque
1800
1884
+
Leu
CAG
[ENA]
¡û
>WENV180814582
ODJO01025396
[ODJO] human metagenome; G_DNA_Supragingival plaque
92
176
+
Leu
CAG
[ENA]
¡û
>WENV180816509
ODJP01019173
[ODJP] human metagenome; G_DNA_Tongue dorsum
588
672
+
Leu
CAG
[ENA]
¡û
>WENV180816558
ODJP01023006
[ODJP] human metagenome; G_DNA_Tongue dorsum
784
700
-
Leu
CAG
[ENA]
¡û
>WENV180819769
ODJR01000456
[ODJR] human metagenome; G_DNA_Tongue dorsum
36203
36119
-
Leu
CAG
[ENA]
¡û
>WENV180823818
ODJW01195341
[ODJW] human metagenome; G_DNA_Supragingival plaque
223
139
-
Leu
CAG
[ENA]
¡û
>WENV180831917
ODKC01000247
[ODKC] human metagenome; G_DNA_Supragingival plaque
15506
15590
+
Leu
CAG
[ENA]
¡û
>WENV180835329
ODKE01002139
[ODKE] human metagenome; G_DNA_Supragingival plaque
2675
2759
+
Leu
CAG
[ENA]
¡û
>WENV180836350
ODKE01131960
[ODKE] human metagenome; G_DNA_Supragingival plaque
91
7
-
Leu
CAG
[ENA]
¡û
>WENV180843497
ODKN01003769
[ODKN] human metagenome; G_DNA_Supragingival plaque
3797
3713
-
Leu
CAG
[ENA]
¡û
>WENV180863975
ODLH01006003
[ODLH] human metagenome; G_DNA_Tongue dorsum
9
93
+
Leu
CAG
[ENA]
¡û
>WENV180874038
ODLP01095749
[ODLP] human metagenome; G_DNA_Tongue dorsum
243
159
-
Leu
CAG
[ENA]
¡û
>WENV180880370
ODLZ01017685
[ODLZ] human metagenome; G_DNA_Tongue dorsum
133
217
+
Leu
CAG
[ENA]
¡û
>WENV180883479
ODMC01006076
[ODMC] human metagenome; G_DNA_Tongue dorsum
4824
4740
-
Leu
CAG
[ENA]
¡û
>WENV180890662
ODMO01007924
[ODMO] human metagenome; G_DNA_Tongue dorsum
1202
1118
-
Leu
CAG
[ENA]
¡û
>WENV180892003
ODMQ01097242
[ODMQ] human metagenome; G_DNA_Supragingival plaque
132
48
-
Leu
CAG
[ENA]
¡û
>WENV180896573
ODNI01001087
[ODNI] human metagenome; G_DNA_Tongue dorsum
5534
5450
-
Leu
CAG
[ENA]
¡û
>WENV180900076
ODOJ01000384
[ODOJ] human metagenome; G_DNA_Tongue dorsum
11032
10948
-
Leu
CAG
[ENA]
¡û
>WENV180922644
ODTJ01007268
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2110
2026
-
Leu
CAG
[ENA]
¡û
>WENV180922677
ODTJ01008040
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1458
1374
-
Leu
CAG
[ENA]
¡û
>WENV180923204
ODTJ01065765
[ODTJ] human metagenome; G_DNA_Supragingival plaque
406
322
-
Leu
CAG
[ENA]
¡û
>WENV180924820
ODTK01018526
[ODTK] human metagenome; G_DNA_Supragingival plaque
783
699
-
Leu
CAG
[ENA]
¡û
>WENV180930857
ODTP01000508
[ODTP] human metagenome; G_DNA_Tongue dorsum
7518
7434
-
Leu
CAG
[ENA]
¡û
>WENV180938027
ODTX01000414
[ODTX] human metagenome; G_DNA_Supragingival plaque
33154
33070
-
Leu
CAG
[ENA]
¡û
>WENV180939492
ODTX01043461
[ODTX] human metagenome; G_DNA_Supragingival plaque
641
725
+
Leu
CAG
[ENA]
¡û
>WENV180951937
ODUH01079042
[ODUH] human metagenome; G_DNA_Subgingival plaque
546
462
-
Leu
CAG
[ENA]
¡û
>WENV180960372
ODUM01026742
[ODUM] human metagenome; G_DNA_Tongue dorsum
139
223
+
Leu
CAG
[ENA]
¡û
>WENV180964156
ODUO01000391
[ODUO] human metagenome; G_DNA_Supragingival plaque
7462
7546
+
Leu
CAG
[ENA]
¡û
>WENV180999090
ODVT01006084
[ODVT] human metagenome; G_DNA_Buccal mucosa
3943
4027
+
Leu
CAG
[ENA]
¡û
>WENV180999140
ODVT01007150
[ODVT] human metagenome; G_DNA_Buccal mucosa
2687
2771
+
Leu
CAG
[ENA]
¡û
>WENV181002897
ODVX01002601
[ODVX] human metagenome; G_DNA_Supragingival plaque
9627
9543
-
Leu
CAG
[ENA]
¡û
>WENV181004162
ODVX01120439
[ODVX] human metagenome; G_DNA_Supragingival plaque
240
156
-
Leu
CAG
[ENA]
¡û
>WENV181009481
ODWE01078913
[ODWE] human metagenome; G_DNA_Supragingival plaque
318
234
-
Leu
CAG
[ENA]
¡û
>WENV181019911
ODWU01023841
[ODWU] human metagenome; G_DNA_Supragingival plaque
413
497
+
Leu
CAG
[ENA]
¡û
>WENV181038332
ODXQ01001017
[ODXQ] human metagenome; G_DNA_Tongue dorsum
594
510
-
Leu
CAG
[ENA]
¡û
>WENV181050949
ODYD01106933
[ODYD] human metagenome; G_DNA_Supragingival plaque
13
97
+
Leu
CAG
[ENA]
¡û
>WENV181067547
ODZI01025225
[ODZI] human metagenome; G_DNA_Supragingival plaque
1236
1152
-
Leu
CAG
[ENA]
¡û
>WENV181067867
ODZI01064158
[ODZI] human metagenome; G_DNA_Supragingival plaque
239
323
+
Leu
CAG
[ENA]
¡û
>WENV181077179
OEAP01030824
[OEAP] human metagenome; G_DNA_Supragingival plaque
339
255
-
Leu
CAG
[ENA]
¡û
>WENV181077223
OEAP01032784
[OEAP] human metagenome; G_DNA_Supragingival plaque
1290
1374
+
Leu
CAG
[ENA]
¡û
>WENV181081150
OEAS01138452
[OEAS] human metagenome; G_DNA_Supragingival plaque
12
96
+
Leu
CAG
[ENA]
¡û
>WENV181081599
OEAS01276068
[OEAS] human metagenome; G_DNA_Supragingival plaque
109
193
+
Leu
CAG
[ENA]
¡û
>WENV181102701
OECT01008133
[OECT] human metagenome; G_DNA_Tongue dorsum
195
279
+
Leu
CAG
[ENA]
¡û
>WENV181105545
OEED01006795
[OEED] human metagenome; G_DNA_Tongue dorsum
124
208
+
Leu
CAG
[ENA]
¡û
>WENV181107427
OEEI01007286
[OEEI] human metagenome; G_DNA_Supragingival plaque
2091
2175
+
Leu
CAG
[ENA]
¡û
>WENV181113234
OEEL01016185
[OEEL] human metagenome; G_DNA_Tongue dorsum
1455
1371
-
Leu
CAG
[ENA]
¡û
>WENV181146703
OEHQ01018062
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1111
1195
+
Leu
CAG
[ENA]
¡û
>WENV181146907
OEHQ01041069
[OEHQ] human metagenome; G_DNA_Supragingival plaque
340
424
+
Leu
CAG
[ENA]
¡û
>WENV181177304
OEJS01000556
[OEJS] human metagenome; G_DNA_Supragingival plaque
11154
11238
+
Leu
CAG
[ENA]
¡û
>W141146341
AWVL01000162
Fusobacteriota
Leptotrichia sp. oral taxon 879 oral taxon 879 str. F0557 [AWVL]
1581
1665
+
Leu
CAG
[ENA]
¡û
>W141146352
AWVM01000079
Fusobacteriota
Leptotrichia wadei F0279 [AWVM]
45967
46051
+
Leu
CAG
[ENA]
¡û
>W141146580
AWVS01000083
Fusobacteriota
Leptotrichia sp. oral taxon 225 oral taxon 225 str. F0581 [AWVS]
24477
24561
+
Leu
CAG
[ENA]
¡û
>WENV181574738
OGJT01007630
[OGJT] metagenome; Human gut stool
472
556
+
Leu
CAG
[ENA]
¡û
>W141169001
AXVL01000006
Fusobacteriota
Leptotrichia trevisanii DSM 22070 [AXVL]
74103
74019
-
Leu
CAG
[ENA]
¡û
>W09109371
ABUE01000003
Fusobacteriota
Leptotrichia buccalis DSM 1135 [ABUE]
145954
146038
+
Leu
CAG
[ENA]
¡û
>W09134877
ACVB01000055
Fusobacteriota
Leptotrichia hofstadii F0254 [ACVB]
54011
54095
+
Leu
CAG
[ENA]
¡û
>W1910228871
FNVZ01000005
Fusobacteriota
Leptotrichia massiliensis Marseille-P3007 [FNVZ]
1393121
1393037
-
Leu
CAG
[ENA]
¡û
>W2010382847
FNVZ01000005
Fusobacteriota
Leptotrichia massiliensis Marseille-P3007 [FNVZ]
1393121
1393037
-
Leu
CAG
[ENA]
¡û
>C241002904
AP019827
Fusobacteriota
Leptotrichia shahii JCM16776 [AP019827]
1554176
1554092
-
Leu
CAG
-
¡û
>C241002935
AP019829
Fusobacteriota
Leptotrichia wadei JCM16777 [AP019829]
1558155
1558239
+
Leu
CAG
-
¡û
>C241003026
AP019834
Fusobacteriota
Leptotrichia wadei JMUB3933 [AP019834]
1550956
1551040
+
Leu
CAG
-
¡û
>C241003071
AP019835
Fusobacteriota
Leptotrichia wadei JMUB3934 [AP019835]
1628146
1628230
+
Leu
CAG
-
¡û
>C241003134
AP019840
Fusobacteriota
Leptotrichia trevisanii JMUB3935 [AP019840]
2155883
2155799
-
Leu
CAG
-
¡û
>C241003157
AP019841
Fusobacteriota
Leptotrichia wadei JMUB3936 [AP019841]
1611156
1611240
+
Leu
CAG
-
¡û
>C241003225
AP019845
Fusobacteriota
Leptotrichia trevisanii JMUB4039 [AP019845]
1997228
1997144
-
Leu
CAG
-
¡û
>C241003248
AP019846
Fusobacteriota
Leptotrichia hongkongensis JMUB5056 [AP019846]
1507813
1507897
+
Leu
CAG
-
¡û
>C10108175
CP001685
Fusobacteriota
Leptotrichia buccalis C-1013-b DSM 1135 [CP001685]
605457
605541
+
Leu
CAG
[Ensembl]
¡û
>W1610907298
LSDD01000034
Fusobacteriota
Leptotrichia wadei [LSDD]
18135
18219
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK