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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106079 (12 seq.)
>W131214578
ATUH01000003
Mycoplasmatota
Metamycoplasma orale ATCC 23714 [ATUH]
10389
10305
-
Leu
TAG
[ENA]
¡û
>WENV180900656
ODOJ01004906
[ODOJ] human metagenome; G_DNA_Tongue dorsum
3753
3669
-
Leu
TAG
[ENA]
¡û
>WENV181103377
OECT01099309
[OECT] human metagenome; G_DNA_Tongue dorsum
181
97
-
Leu
TAG
[ENA]
¡û
>C191218040
LR214940
Mycoplasmatota
Metamycoplasma orale NCTC10112 [LR214940]
95955
95871
-
Leu
TAG
-
¡û
>W1910236632
FPIG01000005
Chlamydiota
Chlamydia abortus AB7 [FPIG]
42598
42514
-
Leu
TAG
[ENA]
¡û
>W1910239062
FPMT01000289
Chlamydiota
Chlamydia abortus C20_98 [FPMT]
196
112
-
Leu
TAG
[ENA]
¡û
>W1910239120
FPMU01000062
Chlamydiota
Chlamydia abortus 03DC36 [FPMU]
356
272
-
Leu
TAG
[ENA]
¡û
>W1910281365
FQTM01000307
Chlamydiota
Chlamydia abortus 162STDY5437294 [FQTM]
270
186
-
Leu
TAG
[ENA]
¡û
>W2010385860
FPIG01000005
Chlamydiota
Chlamydia abortus AB7 [FPIG]
42598
42514
-
Leu
TAG
[ENA]
¡û
>W2010388271
FPMT01000289
Chlamydiota
Chlamydia abortus C20_98 [FPMT]
196
112
-
Leu
TAG
[ENA]
¡û
>W2010388329
FPMU01000062
Chlamydiota
Chlamydia abortus 03DC36 [FPMU]
356
272
-
Leu
TAG
[ENA]
¡û
>W2010393854
FQTM01000307
Chlamydiota
Chlamydia abortus 162STDY5437294 [FQTM]
270
186
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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