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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106090 (104 seq.)
>W1711095393
LTGT01000052
Actinomycetota
Rothia sp. HMSC069C03 [LTGT]
25611
25529
-
Leu
TAG
[ENA]
¡û
>W1711098412
LTJO01000003
Actinomycetota
Rothia sp. HMSC064D08 [LTJO]
850
934
+
Leu
TAG
[ENA]
¡û
>W1711104710
LTQB01000021
Actinomycetota
Rothia sp. HMSC062F03 [LTQB]
15227
15145
-
Leu
TAG
[ENA]
¡û
>W1711107924
LTTG01000028
Actinomycetota
Rothia sp. HMSC065D02 [LTTG]
28278
28194
-
Leu
TAG
[ENA]
¡û
>W1711109149
LTUK01000009
Actinomycetota
Rothia sp. HMSC069C01 [LTUK]
111798
111714
-
Leu
TAG
[ENA]
¡û
>W1711110658
LTVT01000016
Actinomycetota
Rothia sp. HMSC071C12 [LTVT]
1101
1183
+
Leu
TAG
[ENA]
¡û
>W1711111143
LTWE01000043
Actinomycetota
Rothia sp. HMSC061E04 [LTWE]
25588
25506
-
Leu
TAG
[ENA]
¡û
>W1711111443
LTWL01000059
Actinomycetota
Rothia sp. HMSC068E02 [LTWL]
47584
47502
-
Leu
TAG
[ENA]
¡û
>W1711224121
LXTU01000037
Actinomycetota
Rothia sp. ND6WE1A [LXTU]
144495
144579
+
Leu
TAG
[ENA]
¡û
>W1711228049
LXWF01000011
Actinomycetota
Rothia nasimurium [LXWF]
381187
381269
+
Leu
TAG
[ENA]
¡û
>WENV180007470
FLSA01034041
[FLSA] metagenome; saliva
1629
1547
-
Leu
TAG
[ENA]
¡û
>WENV180168479
OAVR01000193
[OAVR] human gut metagenome; faeces
12908
12826
-
Leu
TAG
[ENA]
¡û
>WENV180171610
OAVW01006794
[OAVW] human gut metagenome; faeces
1371
1453
+
Leu
TAG
[ENA]
¡û
>WENV180474886
OBYT01000124
[OBYT] human gut metagenome; faeces
6266
6184
-
Leu
TAG
[ENA]
¡û
>WENV180697377
ODDE01000187
[ODDE] human metagenome; G_DNA_Supragingival plaque
8695
8779
+
Leu
TAG
[ENA]
¡û
>WENV180704599
ODEJ01000001
[ODEJ] human metagenome; G_DNA_Tongue dorsum
703311
703393
+
Leu
TAG
[ENA]
¡û
>WENV180704611
ODEJ01000001
[ODEJ] human metagenome; G_DNA_Tongue dorsum
112993
112911
-
Leu
TAG
[ENA]
¡û
>WENV180717529
ODGE01000027
[ODGE] human metagenome; G_DNA_Buccal mucosa
123485
123403
-
Leu
TAG
[ENA]
¡û
>WENV180717691
ODGE01000686
[ODGE] human metagenome; G_DNA_Buccal mucosa
895
979
+
Leu
TAG
[ENA]
¡û
>WENV180722012
ODGL01052451
[ODGL] human metagenome; G_DNA_Subgingival plaque
107
23
-
Leu
TAG
[ENA]
¡û
>WENV180733669
ODGZ01000440
[ODGZ] human metagenome; G_DNA_Supragingival plaque
16080
15996
-
Leu
TAG
[ENA]
¡û
>WENV180745993
ODHM01000669
[ODHM] human metagenome; G_DNA_Buccal mucosa
103
21
-
Leu
TAG
[ENA]
¡û
>WENV180754668
ODHU01000205
[ODHU] human metagenome; G_DNA_Supragingival plaque
11658
11742
+
Leu
TAG
[ENA]
¡û
>WENV180757724
ODHW01001485
[ODHW] human metagenome; G_DNA_Tongue dorsum
115
33
-
Leu
TAG
[ENA]
¡û
>WENV180764152
ODIA01021481
[ODIA] human metagenome; G_DNA_Tongue dorsum
900
982
+
Leu
TAG
[ENA]
¡û
>WENV180774471
ODIJ01025979
[ODIJ] human metagenome; G_DNA_Tongue dorsum
373
455
+
Leu
TAG
[ENA]
¡û
>WENV180775597
ODIK01001641
[ODIK] human metagenome; G_DNA_Tongue dorsum
6520
6438
-
Leu
TAG
[ENA]
¡û
>WENV180791490
ODIU01004623
[ODIU] human metagenome; G_DNA_Buccal mucosa
664
746
+
Leu
TAG
[ENA]
¡û
>WENV180800570
ODJD01000191
[ODJD] human metagenome; G_DNA_Supragingival plaque
6057
6141
+
Leu
TAG
[ENA]
¡û
>WENV180805494
ODJH01000022
[ODJH] human metagenome; G_DNA_Tongue dorsum
83588
83506
-
Leu
TAG
[ENA]
¡û
>WENV180821069
ODJS01000581
[ODJS] human metagenome; G_DNA_Tongue dorsum
926
1008
+
Leu
TAG
[ENA]
¡û
>WENV180833930
ODKD01001010
[ODKD] human metagenome; G_DNA_Supragingival plaque
908
992
+
Leu
TAG
[ENA]
¡û
>WENV180843309
ODKN01001806
[ODKN] human metagenome; G_DNA_Supragingival plaque
6674
6758
+
Leu
TAG
[ENA]
¡û
>WENV180844110
ODKN01035862
[ODKN] human metagenome; G_DNA_Supragingival plaque
85
1
-
Leu
TAG
[ENA]
¡û
>WENV180862833
ODLF01012307
[ODLF] human metagenome; G_DNA_Buccal mucosa
626
708
+
Leu
TAG
[ENA]
¡û
>WENV180864356
ODLH01029078
[ODLH] human metagenome; G_DNA_Tongue dorsum
887
969
+
Leu
TAG
[ENA]
¡û
>WENV180864597
ODLH01073776
[ODLH] human metagenome; G_DNA_Tongue dorsum
274
356
+
Leu
TAG
[ENA]
¡û
>WENV180873601
ODLP01012241
[ODLP] human metagenome; G_DNA_Tongue dorsum
91
173
+
Leu
TAG
[ENA]
¡û
>WENV180879632
ODLZ01001315
[ODLZ] human metagenome; G_DNA_Tongue dorsum
6986
6904
-
Leu
TAG
[ENA]
¡û
>WENV180879847
ODLZ01003184
[ODLZ] human metagenome; G_DNA_Tongue dorsum
102
18
-
Leu
TAG
[ENA]
¡û
>WENV180883999
ODMC01030382
[ODMC] human metagenome; G_DNA_Tongue dorsum
109
27
-
Leu
TAG
[ENA]
¡û
>WENV180890514
ODMO01003679
[ODMO] human metagenome; G_DNA_Tongue dorsum
1119
1201
+
Leu
TAG
[ENA]
¡û
>WENV180891531
ODMQ01000752
[ODMQ] human metagenome; G_DNA_Supragingival plaque
6851
6935
+
Leu
TAG
[ENA]
¡û
>WENV180896824
ODNI01002521
[ODNI] human metagenome; G_DNA_Tongue dorsum
9218
9300
+
Leu
TAG
[ENA]
¡û
>WENV180899944
ODOJ01000151
[ODOJ] human metagenome; G_DNA_Tongue dorsum
15537
15455
-
Leu
TAG
[ENA]
¡û
>WENV180902156
ODOK01020887
[ODOK] human metagenome; G_DNA_Tongue dorsum
345
427
+
Leu
TAG
[ENA]
¡û
>WENV180921273
ODTJ01000012
[ODTJ] human metagenome; G_DNA_Supragingival plaque
28872
28788
-
Leu
TAG
[ENA]
¡û
>WENV180932158
ODTP01028064
[ODTP] human metagenome; G_DNA_Tongue dorsum
1159
1241
+
Leu
TAG
[ENA]
¡û
>WENV180945833
ODUD01000174
[ODUD] human metagenome; G_DNA_Tongue dorsum
125
43
-
Leu
TAG
[ENA]
¡û
>WENV180952613
ODUI01000680
[ODUI] human metagenome; G_DNA_Tongue dorsum
14199
14117
-
Leu
TAG
[ENA]
¡û
>WENV180959538
ODUM01001132
[ODUM] human metagenome; G_DNA_Tongue dorsum
15429
15347
-
Leu
TAG
[ENA]
¡û
>WENV180987896
ODVL01000004
[ODVL] human metagenome; G_DNA_Tongue dorsum
121641
121723
+
Leu
TAG
[ENA]
¡û
>WENV180988861
ODVL01016160
[ODVL] human metagenome; G_DNA_Tongue dorsum
649
565
-
Leu
TAG
[ENA]
¡û
>WENV181006094
ODWA01001447
[ODWA] human metagenome; G_DNA_Buccal mucosa
2719
2635
-
Leu
TAG
[ENA]
¡û
>WENV181012087
ODWJ01011284
[ODWJ] human metagenome; G_DNA_Buccal mucosa
540
624
+
Leu
TAG
[ENA]
¡û
>WENV181019455
ODWU01003470
[ODWU] human metagenome; G_DNA_Supragingival plaque
85
1
-
Leu
TAG
[ENA]
¡û
>WENV181038130
ODXQ01000432
[ODXQ] human metagenome; G_DNA_Tongue dorsum
26247
26165
-
Leu
TAG
[ENA]
¡û
>WENV181042687
ODXU01003554
[ODXU] human metagenome; G_DNA_Buccal mucosa
2195
2111
-
Leu
TAG
[ENA]
¡û
>WENV181049242
ODYD01000002
[ODYD] human metagenome; G_DNA_Supragingival plaque
162367
162451
+
Leu
TAG
[ENA]
¡û
>WENV181065673
ODYV01000004
[ODYV] human metagenome; G_DNA_Buccal mucosa
121182
121100
-
Leu
TAG
[ENA]
¡û
>WENV181068625
ODZZ01000614
[ODZZ] human metagenome; G_DNA_Tongue dorsum
938
1020
+
Leu
TAG
[ENA]
¡û
>WENV181070509
OEAE01002570
[OEAE] human metagenome; G_DNA_Supragingival plaque
85
1
-
Leu
TAG
[ENA]
¡û
>WENV181079241
OEAS01003369
[OEAS] human metagenome; G_DNA_Supragingival plaque
869
953
+
Leu
TAG
[ENA]
¡û
>WENV181102679
OECT01007600
[OECT] human metagenome; G_DNA_Tongue dorsum
1877
1795
-
Leu
TAG
[ENA]
¡û
>WENV181105398
OEED01003666
[OEED] human metagenome; G_DNA_Tongue dorsum
6654
6736
+
Leu
TAG
[ENA]
¡û
>WENV181108760
OEEJ01000259
[OEEJ] human metagenome; G_DNA_Tongue dorsum
26157
26075
-
Leu
TAG
[ENA]
¡û
>WENV181113360
OEEL01021784
[OEEL] human metagenome; G_DNA_Tongue dorsum
656
574
-
Leu
TAG
[ENA]
¡û
>WENV181130490
OEFY01015807
[OEFY] human metagenome; G_DNA_Throat
96
14
-
Leu
TAG
[ENA]
¡û
>WENV181135793
OEGI01000001
[OEGI] human metagenome; G_DNA_Supragingival plaque
694440
694524
+
Leu
TAG
[ENA]
¡û
>WENV181146191
OEHQ01001637
[OEHQ] human metagenome; G_DNA_Supragingival plaque
869
953
+
Leu
TAG
[ENA]
¡û
>WENV181146222
OEHQ01001966
[OEHQ] human metagenome; G_DNA_Supragingival plaque
8323
8239
-
Leu
TAG
[ENA]
¡û
>WENV182641187
OJLE01023243
[OJLE] metagenome; surface
409
327
-
Leu
TAG
[ENA]
¡û
>WENV182941496
OKVG01002203
[OKVG] human gut metagenome; human gut
6089
6171
+
Leu
TAG
[ENA]
¡û
>W1910334019
FSNK01000007
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 133 [FSNK]
106062
106146
+
Leu
TAG
[ENA]
¡û
>W1910431600
FVUK01000006
Actinomycetota
Mycobacteroides abscessus subsp. bolletii 137 [FVUK]
160773
160691
-
Leu
TAG
[ENA]
¡û
>W2011376848
RBMG01000001
Actinomycetota
Rothia sp. HSID18069 [RBMG]
1152556
1152640
+
Leu
TAG
[ENA]
¡û
>W2011673505
SPQC01000033
Actinomycetota
Rothia nasimurium irhom_31 [SPQC]
1392
1310
-
Leu
TAG
[ENA]
¡û
>W2011987765
VDPH01000001
Actinomycetota
Rothia mucilaginosa DE0531 [VDPH]
109319
109403
+
Leu
TAG
[ENA]
¡û
>W2012142198
VTQE01000001
Actinomycetota
Rothia mucilaginosa DE0545 [VTQE]
125398
125314
-
Leu
TAG
[ENA]
¡û
>W2110019752
BMDC01000001
Actinomycetota
Rothia aerolata CCM 8669 [BMDC]
653988
654070
+
Leu
TAG
[ENA]
¡û
>W2110074564
CABFMC010000006
Actinomycetota
Rothia dentocariosa [CABFMC]
181981
182065
+
Leu
TAG
[ENA]
¡û
>W2110317726
JADGLK010000033
Actinomycetota
Rothia nasimurium 19428wA5_irhom_31 [JADGLK]
1392
1310
-
Leu
TAG
[ENA]
¡û
>W2110492503
JAFEUT010000002
Actinomycetota
Rothia sp. ZJ1223 [JAFEUT]
116611
116693
+
Leu
TAG
[ENA]
¡û
>C211103750
CP056080
Actinomycetota
Rothia nasimurium E1706032 [CP056080]
961075
960993
-
Leu
TAG
-
¡û
>C211148909
CP061538
Actinomycetota
Rothia amarae KJZ-9 [CP061538]
1028101
1028017
-
Leu
TAG
-
¡û
>C211148956
CP061539
Actinomycetota
Rothia terrae KJZ-14 [CP061539]
1047046
1046964
-
Leu
TAG
-
¡û
>C211276714
CP070480
Actinomycetota
Rothia sp. ZJ932 [CP070480]
909341
909259
-
Leu
TAG
-
¡û
>C211370780
CP079819
Actinomycetota
Rothia aeria LPB0401 [CP079819]
721959
721875
-
Leu
TAG
-
¡û
>W10111898
ADDW01000002
Actinomycetota
Rothia dentocariosa M567 [ADDW]
207012
207096
+
Leu
TAG
[ENA]
¡û
>C231165031
CP080203
Actinomycetota
Mycetocola spongiae MSC19 [CP080203]
3132292
3132209
-
Leu
TAG
-
¡û
>C231378442
CP097094
Actinomycetota
Rothia mucilaginosa [CP097094]
812315
812233
-
Leu
TAG
-
¡û
>C241262486
CP125946
Actinomycetota
Rothia sp. SD9660Na [CP125946]
883640
883558
-
Leu
TAG
-
¡û
>W11114875
ADDW01000002
Actinomycetota
Rothia dentocariosa M567 [ADDW]
207012
207096
+
Leu
TAG
[ENA]
¡û
>W1511316275
JPVS01000004
Actinomycetota
Rothia aeria C6D [JPVS]
155632
155548
-
Leu
TAG
[ENA]
¡û
>W1511440020
JUOQ01000022
Actinomycetota
Rothia mucilaginosa 902_RMUC [JUOQ]
15468
15386
-
Leu
TAG
[ENA]
¡û
>W1511443405
JUSX01000085
Actinomycetota
Rothia mucilaginosa 788_RMUC [JUSX]
3320
3238
-
Leu
TAG
[ENA]
¡û
>W1511449761
JVBL01000017
Actinomycetota
Rothia mucilaginosa 574_RMUC [JVBL]
889
971
+
Leu
TAG
[ENA]
¡û
>W1511452581
JVEI01000011
Actinomycetota
Rothia mucilaginosa 509_RMUC [JVEI]
939
1021
+
Leu
TAG
[ENA]
¡û
>W1511458337
JVJH01000161
Actinomycetota
Rothia mucilaginosa 382_RMUC [JVJH]
8643
8561
-
Leu
TAG
[ENA]
¡û
>W1511460393
JVLK01000069
Actinomycetota
Rothia mucilaginosa 329_RMUC [JVLK]
15616
15534
-
Leu
TAG
[ENA]
¡û
>W1511464459
JVPY01000002
Actinomycetota
Rothia mucilaginosa 207_RMUC [JVPY]
220600
220518
-
Leu
TAG
[ENA]
¡û
>W1511471940
JVYQ01000017
Actinomycetota
Rothia mucilaginosa 1211_RMUC [JVYQ]
931
1013
+
Leu
TAG
[ENA]
¡û
>C161002142
AP014938
Actinomycetota
Rothia mucilaginosa NUM-Rm6536 [AP014938]
1822450
1822368
-
Leu
TAG
[Ensembl]
¡û
>W1611008492
LXTU01000037
Actinomycetota
Rothia sp. ND6WE1A [LXTU]
144495
144579
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK