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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106096 (35 seq.)
>W131000539
AGEN01000036
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
250225
250308
+
Leu
GAG
[ENA]
¡û
>W1710885558
LMXH01000003
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
32114
32198
+
Leu
GAG
[ENA]
¡û
>W1710885588
LMXH01000009
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
68230
68314
+
Leu
GAG
[ENA]
¡û
>W131000550
AGEN01000037
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
23500
23584
+
Leu
GAG
[ENA]
¡û
>W141237869
BBJT01000004
Bacillota
Paenibacillus chitinolyticus NBRC 15660 [BBJT]
703024
702940
-
Leu
GAG
[ENA]
¡û
>W141237939
BBJT01000026
Bacillota
Paenibacillus chitinolyticus NBRC 15660 [BBJT]
7592
7509
-
Leu
GAG
[ENA]
¡û
>WENV183727185
PJTO01010829
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
668
751
+
Leu
GAG
[ENA]
¡û
>WENV170705617
LNAP01000021
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
127638
127719
+
Leu
GAG
[ENA]
¡û
>C191007665
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
1559435
1559519
+
Leu
GAG
-
¡û
>C191044804
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
1148821
1148904
+
Leu
GAG
-
¡û
>C191044815
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
1185714
1185798
+
Leu
GAG
-
¡û
>W1910913835
NHRJ02000001
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
203677
203593
-
Leu
GAG
[ENA]
¡û
>W2010269517
CABKSB020000002
Bacillota
Paenibacillaceae bacterium [CABKSB]
411355
411438
+
Leu
GAG
[ENA]
¡û
>W2010269528
CABKSB020000002
Bacillota
Paenibacillaceae bacterium [CABKSB]
448293
448377
+
Leu
GAG
[ENA]
¡û
>W2010966856
NHRJ02000001
Bacillota
Bacillus xerothermodurans ATCC 27380 [NHRJ]
203677
203593
-
Leu
GAG
[ENA]
¡û
>W2011421147
RHLK01000002
Bacillota
Paenibacillus sp. N10 [RHLK]
333241
333325
+
Leu
GAG
[ENA]
¡û
>W2011421177
RHLK01000012
Bacillota
Paenibacillus sp. N10 [RHLK]
148138
148222
+
Leu
GAG
[ENA]
¡û
>W2011973588
VCIW01000006
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
121883
121964
+
Leu
GAG
[ENA]
¡û
>W2011973589
VCIW01000006
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
138797
138881
+
Leu
GAG
[ENA]
¡û
>W2110580638
JAGXJX010000006
Bacillota
Paenibacillus sp. GbtcB18 [JAGXJX]
407992
408075
+
Leu
GAG
[ENA]
¡û
>W2110645743
JAHTLB010000002
Bacillota
Paenibacillus chitinolyticus JMW06 [JAHTLB]
23622
23706
+
Leu
GAG
[ENA]
¡û
>W2110645764
JAHTLB010000006
Bacillota
Paenibacillus chitinolyticus JMW06 [JAHTLB]
7781
7698
-
Leu
GAG
[ENA]
¡û
>W2130003744
BOVK01000083
Bacillota
Xylanibacillus composti K13 [BOVK]
387
306
-
Leu
GAG
[ENA]
¡û
>W2130018055
JACXJA010000034
Bacillota
Paenibacillus sp. IB182363 [JACXJA]
18644
18727
+
Leu
GAG
[ENA]
¡û
>C241293355
CP130318
Bacillota
Paenibacillus aurantius MBLB1776 [CP130318]
5024992
5024908
-
Leu
GAG
-
¡û
>W2310018077
BQWH01000023
Bacillota
Paenibacillus chitinolyticus YSY-3.1 [BQWH]
72662
72745
+
Leu
GAG
[ENA]
¡û
>W2310018093
BQWH01000042
Bacillota
Paenibacillus chitinolyticus YSY-3.1 [BQWH]
24131
24215
+
Leu
GAG
[ENA]
¡û
>W11158446
AFDH01000025
Bacillota
Paenibacillus sp. HGF7 [AFDH]
255613
255529
-
Leu
GAG
[ENA]
¡û
>W11158481
AFDH01000100
Bacillota
Paenibacillus sp. HGF7 [AFDH]
7626
7543
-
Leu
GAG
[ENA]
¡û
>C161034795
CP011388
Bacillota
Paenibacillus swuensis DY6 [CP011388]
3000618
3000699
+
Leu
GAG
[Ensembl]
¡û
>W1610049701
BBFE01000074
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
7640
7723
+
Leu
GAG
[ENA]
¡û
>W1610747484
LMXH01000003
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
32114
32198
+
Leu
GAG
[ENA]
¡û
>W1610747514
LMXH01000009
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
68230
68314
+
Leu
GAG
[ENA]
¡û
>W1710046100
BBFE01000074
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
7640
7723
+
Leu
GAG
[ENA]
¡û
>W1710539299
FNVF01000030
Bacillota
Paenibacillus sp. UNC499MF [FNVF]
7617
7534
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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