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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106214 (74 seq.)
>W1711314429
MAUJ01000019
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [MAUJ]
32103
32187
+
Leu
TAG
[ENA]
¡û
>C171038663
CP015415
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [CP015415, CP015416]
4134161
4134245
+
Leu
TAG
-
¡û
>C171038666
CP015415
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4054 [CP015415, CP015416]
4134560
4134644
+
Leu
TAG
-
¡û
>W131180191
ARMY01000034
Gammaproteobacteria
Pseudoalteromonas piscicida ATCC 15057 [ARMY]
29711
29627
-
Leu
TAG
[ENA]
¡û
>W131180193
ARMY01000034
Gammaproteobacteria
Pseudoalteromonas piscicida ATCC 15057 [ARMY]
29360
29276
-
Leu
TAG
[ENA]
¡û
>W131180195
ARMY01000034
Gammaproteobacteria
Pseudoalteromonas piscicida ATCC 15057 [ARMY]
29009
28925
-
Leu
TAG
[ENA]
¡û
>W131180198
ARMY01000034
Gammaproteobacteria
Pseudoalteromonas piscicida ATCC 15057 [ARMY]
28649
28565
-
Leu
TAG
[ENA]
¡û
>W131180200
ARMY01000034
Gammaproteobacteria
Pseudoalteromonas piscicida ATCC 15057 [ARMY]
28318
28234
-
Leu
TAG
[ENA]
¡û
>C181067372
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
1023184
1023100
-
Leu
TAG
-
¡û
>C181067374
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
1022960
1022876
-
Leu
TAG
-
¡û
>C181067376
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
1022682
1022598
-
Leu
TAG
-
¡û
>C181067379
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
1022398
1022314
-
Leu
TAG
-
¡û
>C181067381
CP022522
Gammaproteobacteria
Pseudoalteromonas sp. NC201 [CP022522]
1022066
1021982
-
Leu
TAG
-
¡û
>C191079833
CP031759
Gammaproteobacteria
Pseudoalteromonas piscicida DE1-A [CP031759, CP031760]
3133954
3134038
+
Leu
TAG
-
¡û
>C191079835
CP031759
Gammaproteobacteria
Pseudoalteromonas piscicida DE1-A [CP031759, CP031760]
3134230
3134314
+
Leu
TAG
-
¡û
>C191079838
CP031759
Gammaproteobacteria
Pseudoalteromonas piscicida DE1-A [CP031759, CP031760]
3134590
3134674
+
Leu
TAG
-
¡û
>C191079840
CP031759
Gammaproteobacteria
Pseudoalteromonas piscicida DE1-A [CP031759, CP031760]
3134944
3135028
+
Leu
TAG
-
¡û
>C191079842
CP031759
Gammaproteobacteria
Pseudoalteromonas piscicida DE1-A [CP031759, CP031760]
3135358
3135442
+
Leu
TAG
-
¡û
>W141621799
JJNY01000063
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
42149
42233
+
Leu
TAG
[ENA]
¡û
>W1910911233
NHNM01000025
Gammaproteobacteria
Pseudoalteromonas sp. GCY [NHNM]
20798
20714
-
Leu
TAG
[ENA]
¡û
>W1910911235
NHNM01000025
Gammaproteobacteria
Pseudoalteromonas sp. GCY [NHNM]
20445
20361
-
Leu
TAG
[ENA]
¡û
>W1910911237
NHNM01000025
Gammaproteobacteria
Pseudoalteromonas sp. GCY [NHNM]
20167
20083
-
Leu
TAG
[ENA]
¡û
>W1910911240
NHNM01000025
Gammaproteobacteria
Pseudoalteromonas sp. GCY [NHNM]
19804
19720
-
Leu
TAG
[ENA]
¡û
>W1910911241
NHNM01000025
Gammaproteobacteria
Pseudoalteromonas sp. GCY [NHNM]
19459
19375
-
Leu
TAG
[ENA]
¡û
>W1910976863
NKHF01000185
Gammaproteobacteria
Pseudoalteromonas piscicida 36Y_RITHPW [NKHF]
281
365
+
Leu
TAG
[ENA]
¡û
>W1911239167
NSDG01000008
Gammaproteobacteria
Pseudoalteromonas sp. HM-SA03 [NSDG]
236
320
+
Leu
TAG
[ENA]
¡û
>W1911239169
NSDG01000008
Gammaproteobacteria
Pseudoalteromonas sp. HM-SA03 [NSDG]
601
685
+
Leu
TAG
[ENA]
¡û
>W1911239171
NSDG01000008
Gammaproteobacteria
Pseudoalteromonas sp. HM-SA03 [NSDG]
921
1005
+
Leu
TAG
[ENA]
¡û
>W1911239209
NSDG01000067
Gammaproteobacteria
Pseudoalteromonas sp. HM-SA03 [NSDG]
264
180
-
Leu
TAG
[ENA]
¡û
>W1911698378
QNQN01000013
Gammaproteobacteria
Pseudoalteromonas sp. A757 [QNQN]
146
230
+
Leu
TAG
[ENA]
¡û
>W1911698389
QNQN01000024
Gammaproteobacteria
Pseudoalteromonas sp. A757 [QNQN]
2
86
+
Leu
TAG
[ENA]
¡û
>W1911698392
QNQN01000024
Gammaproteobacteria
Pseudoalteromonas sp. A757 [QNQN]
362
446
+
Leu
TAG
[ENA]
¡û
>W1911698398
QNQN01000046
Gammaproteobacteria
Pseudoalteromonas sp. A757 [QNQN]
30180
30096
-
Leu
TAG
[ENA]
¡û
>W1911698415
QNQN01000059
Gammaproteobacteria
Pseudoalteromonas sp. A757 [QNQN]
114782
114866
+
Leu
TAG
[ENA]
¡û
>SRA1004576
SRR006906.75136
metagenomic water samples (SRP000427)
176
92
-
Leu
TAG
[SRA]
>SRA1004756
SRR006906.124788
metagenomic water samples (SRP000427)
119
203
+
Leu
TAG
[SRA]
>SRA1004803
SRR006906.142799
metagenomic water samples (SRP000427)
119
203
+
Leu
TAG
[SRA]
>SRA1004894
SRR006906.175199
metagenomic water samples (SRP000427)
252
168
-
Leu
TAG
[SRA]
>W1810758118
QPID01000008
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
119216
119132
-
Leu
TAG
[ENA]
¡û
>W1511518088
JXXW01000004
Gammaproteobacteria
Pseudoalteromonas piscicida S2040 [JXXW]
195716
195800
+
Leu
TAG
[ENA]
¡û
>W1511518135
JXXW01000086
Gammaproteobacteria
Pseudoalteromonas piscicida S2040 [JXXW]
260
344
+
Leu
TAG
[ENA]
¡û
>W1511518203
JXXX01000158
Gammaproteobacteria
Pseudoalteromonas piscicida S2724 [JXXX]
4
88
+
Leu
TAG
[ENA]
¡û
>W121025153
AHCC01000004
Gammaproteobacteria
Pseudoalteromonas piscicida JCM 20779 [AHCC] JCM 20779 [AHCC]
54586
54502
-
Leu
TAG
[ENA]
¡û
>W121025155
AHCC01000004
Gammaproteobacteria
Pseudoalteromonas piscicida JCM 20779 [AHCC] JCM 20779 [AHCC]
54122
54038
-
Leu
TAG
[ENA]
¡û
>W121025157
AHCC01000004
Gammaproteobacteria
Pseudoalteromonas piscicida JCM 20779 [AHCC] JCM 20779 [AHCC]
53771
53687
-
Leu
TAG
[ENA]
¡û
>W121025160
AHCC01000004
Gammaproteobacteria
Pseudoalteromonas piscicida JCM 20779 [AHCC] JCM 20779 [AHCC]
53316
53232
-
Leu
TAG
[ENA]
¡û
>W121025162
AHCC01000004
Gammaproteobacteria
Pseudoalteromonas piscicida JCM 20779 [AHCC] JCM 20779 [AHCC]
52985
52901
-
Leu
TAG
[ENA]
¡û
>W121064778
AJMP01000048
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
24525
24609
+
Leu
TAG
[ENA]
¡û
>W121064780
AJMP01000048
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
24877
24961
+
Leu
TAG
[ENA]
¡û
>W121064782
AJMP01000048
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
25153
25237
+
Leu
TAG
[ENA]
¡û
>W121064784
AJMP01000048
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
25485
25569
+
Leu
TAG
[ENA]
¡û
>W121064787
AJMP01000048
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
25864
25948
+
Leu
TAG
[ENA]
¡û
>W121064789
AJMP01000048
Gammaproteobacteria
Pseudoalteromonas flavipulchra JG1 [AJMP]
26196
26280
+
Leu
TAG
[ENA]
¡û
>W121102494
AKXJ01000006
Gammaproteobacteria
Pseudoalteromonas sp. NJ631 [AKXJ]
260265
260349
+
Leu
TAG
[ENA]
¡û
>W121102496
AKXJ01000006
Gammaproteobacteria
Pseudoalteromonas sp. NJ631 [AKXJ]
260505
260589
+
Leu
TAG
[ENA]
¡û
>W121102498
AKXJ01000006
Gammaproteobacteria
Pseudoalteromonas sp. NJ631 [AKXJ]
260856
260940
+
Leu
TAG
[ENA]
¡û
>W121102501
AKXJ01000006
Gammaproteobacteria
Pseudoalteromonas sp. NJ631 [AKXJ]
261238
261322
+
Leu
TAG
[ENA]
¡û
>W121102504
AKXJ01000006
Gammaproteobacteria
Pseudoalteromonas sp. NJ631 [AKXJ]
261693
261777
+
Leu
TAG
[ENA]
¡û
>W121123061
BADT01000204
Gammaproteobacteria
Pseudoalteromonas sp. BSi20652 [BADT]
46009
46093
+
Leu
TAG
[ENA]
¡û
>W1610025232
AUXU01000132
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
787
703
-
Leu
TAG
[ENA]
¡û
>W1610025235
AUXU01000132
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
388
304
-
Leu
TAG
[ENA]
¡û
>W1610025730
AUYA01000092
Gammaproteobacteria
Pseudoalteromonas luteoviolacea CPMOR-2 [AUYA]
35353
35437
+
Leu
TAG
[ENA]
¡û
>W1610025742
AUYA01000116
Gammaproteobacteria
Pseudoalteromonas luteoviolacea CPMOR-2 [AUYA]
210
294
+
Leu
TAG
[ENA]
¡û
>W1610025861
AUYB01000130
Gammaproteobacteria
Pseudoalteromonas luteoviolacea DSM 6061 [AUYB]
11920
11836
-
Leu
TAG
[ENA]
¡û
>W1610025864
AUYB01000130
Gammaproteobacteria
Pseudoalteromonas luteoviolacea DSM 6061 [AUYB]
11626
11542
-
Leu
TAG
[ENA]
¡û
>W1610527179
JPWZ01000009
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [JPWZ]
554
470
-
Leu
TAG
[ENA]
¡û
>W1610527182
JPWZ01000009
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [JPWZ]
140
56
-
Leu
TAG
[ENA]
¡û
>W1611059304
MAUJ01000019
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [MAUJ]
32103
32187
+
Leu
TAG
[ENA]
¡û
>W1710021474
AUXU01000132
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
787
703
-
Leu
TAG
[ENA]
¡û
>W1710021477
AUXU01000132
Gammaproteobacteria
Pseudoalteromonas luteoviolacea S4047-1 [AUXU]
388
304
-
Leu
TAG
[ENA]
¡û
>W1710021999
AUYB01000130
Gammaproteobacteria
Pseudoalteromonas luteoviolacea DSM 6061 [AUYB]
11920
11836
-
Leu
TAG
[ENA]
¡û
>W1710022002
AUYB01000130
Gammaproteobacteria
Pseudoalteromonas luteoviolacea DSM 6061 [AUYB]
11626
11542
-
Leu
TAG
[ENA]
¡û
>W1710628682
JPWZ01000009
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [JPWZ]
554
470
-
Leu
TAG
[ENA]
¡û
>W1710628685
JPWZ01000009
Gammaproteobacteria
Pseudoalteromonas luteoviolacea [JPWZ]
140
56
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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