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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106232 (36 seq.)
>WENV010053
AACY020271199
Marine microbial communities from Global Ocean Sampling (GOS)
230
146
-
Leu
TAG
[ENA]
>W1711138221
LVCP01000003
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
103845
103761
-
Leu
TAG
[ENA]
¡û
>W1711229023
LXYB01000003
Mycoplasmatota
Acholeplasma laidlawii [LXYB]
235511
235595
+
Leu
TAG
[ENA]
¡û
>W1711274079
LZGE01000001
Mycoplasmatota
Acholeplasma laidlawii [LZGE]
13945
13861
-
Leu
TAG
[ENA]
¡û
>W1711274111
LZGF01000001
Mycoplasmatota
Acholeplasma laidlawii [LZGF]
11792
11708
-
Leu
TAG
[ENA]
¡û
>W1711437758
MIPS01000018
Mycoplasmatota
Acholeplasma laidlawii [MIPS]
245
161
-
Leu
TAG
[ENA]
¡û
>WENV180212462
OBAN01053061
[OBAN] marine metagenome; ENVO 00002150
386
302
-
Leu
TAG
[ENA]
¡û
>WENV180752774
ODHT01001552
[ODHT] human metagenome; G_DNA_Stool
15994
15910
-
Leu
TAG
[ENA]
¡û
>C08000460
CP000896
Mycoplasmatota
Acholeplasma laidlawii PG-8A [CP000896]
1333543
1333462
-
Leu
TAG
[Ensembl]
¡û
>W141278640
JAFR01000013
Mycoplasmatota
Acholeplasma granularum ATCC 19168 [JAFR]
48246
48330
+
Leu
TAG
[ENA]
¡û
>WENV170471244
CEVG01049933
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6585
6501
-
Leu
TAG
[ENA]
¡û
>WENV170474998
CEVH01190539
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4514
4430
-
Leu
TAG
[ENA]
¡û
>WENV170805511
MDSW01065692
[MDSW] marine metagenome; seawater
42082
41998
-
Leu
TAG
[ENA]
¡û
>WENV170877276
MDTC01054700
[MDTC] marine metagenome; seawater
1768
1852
+
Leu
TAG
[ENA]
¡û
>C181213440
LS483439
Mycoplasmatota
Acholeplasma laidlawii NCTC10116 [LS483439]
1333820
1333736
-
Leu
TAG
-
¡û
>C191218879
LR215050
Mycoplasmatota
Acholeplasma hippikon NCTC10172 [LR215050]
1207088
1207172
+
Leu
TAG
-
¡û
>W141732175
JNJT01000016
Mycoplasmatota
Acholeplasma hippikon ATCC 29725 [JNJT]
70964
70880
-
Leu
TAG
[ENA]
¡û
>C141012154
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
1533399
1533315
-
Leu
TAG
[Ensembl]
¡û
>W1910884389
NELN02000003
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
128387
128303
-
Leu
TAG
[ENA]
¡û
>W1910884421
NELO02000003
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
128387
128303
-
Leu
TAG
[ENA]
¡û
>W1810787486
QRDS01000002
Mycoplasmatota
Acholeplasma laidlawii DSM 23060 [QRDS]
235807
235891
+
Leu
TAG
[ENA]
¡û
>C151102172
LK028559
Mycoplasmatota
Acholeplasma oculi [LK028559]
130371
130455
+
Leu
TAG
[Ensembl]
¡û
>W2010653260
JACAOE010000002
Mycoplasmatota
Acholeplasma laidlawii PG8r1 [JACAOE]
128369
128285
-
Leu
TAG
[ENA]
¡û
>W2010653272
JACAOF010000003
Mycoplasmatota
Acholeplasma laidlawii PG8r3 [JACAOF]
15002
15086
+
Leu
TAG
[ENA]
¡û
>W2010653323
JACAOG010000002
Mycoplasmatota
Acholeplasma laidlawii PG8R10 [JACAOG]
128364
128280
-
Leu
TAG
[ENA]
¡û
>W2010653357
JACAOH010000002
Mycoplasmatota
Acholeplasma laidlawii PG8B [JACAOH]
128366
128282
-
Leu
TAG
[ENA]
¡û
>W2010951140
NELN02000003
Mycoplasmatota
Acholeplasma laidlawii PG8RMel [NELN]
128387
128303
-
Leu
TAG
[ENA]
¡û
>W2010951172
NELO02000003
Mycoplasmatota
Acholeplasma laidlawii PG8RTet [NELO]
128387
128303
-
Leu
TAG
[ENA]
¡û
>W2011813374
UFRU01000001
Mycoplasmatota
Acholeplasma oculi NCTC10150 [UFRU]
130089
130173
+
Leu
TAG
[ENA]
¡û
>W2012070831
VKID01000002
Mycoplasmatota
Acholeplasma laidlawii PG8REry [VKID]
128388
128304
-
Leu
TAG
[ENA]
¡û
>W2110359231
JADNRS010000037
Mycoplasmatota
Acholeplasma laidlawii QMP CG1-1743 [JADNRS]
76934
77018
+
Leu
TAG
[ENA]
¡û
>C211341244
CP076021
Mycoplasmatota
Tenericutes bacterium zrk7 [CP076021]
1588391
1588307
-
Leu
TAG
-
¡û
>C231482307
CP103951
Mycoplasmatota
Acholeplasma laidlawii JS42 [CP103951]
1453112
1453028
-
Leu
TAG
-
¡û
>C241268889
CP126461
Mycoplasmatota
Acholeplasma laidlawii 8195 [CP126461]
1283380
1283296
-
Leu
TAG
-
¡û
>W1610949307
LVCP01000003
Mycoplasmatota
Acholeplasma laidlawii [LVCP]
103845
103761
-
Leu
TAG
[ENA]
¡û
>W1710603792
FUZK01000002
Mycoplasmatota
Acholeplasma oculi [FUZK]
236631
236547
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK