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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10624 (24 seq.)
>W1710876219
LMPA01000004
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
61091
61002
-
Ser
GCT
[ENA]
¡û
>W1710893853
LNFD01000401
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
5212
5301
+
Ser
GCT
[ENA]
¡û
>W1711003305
LQGY01000034
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
33851
33940
+
Ser
GCT
[ENA]
¡û
>W1711173321
LWCT01000049
Actinomycetota
Plantibacter sp. H53 [LWCT]
144033
143944
-
Ser
GCT
[ENA]
¡û
>W1711461531
MJGW01000010
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
64969
64880
-
Ser
GCT
[ENA]
¡û
>WENV180692307
OCZS010460062
[OCZS] soil metagenome; soil
258
347
+
Ser
GCT
[ENA]
¢þ
>WENV170606352
FUWD010654591
[FUWD] metagenome; unknown
127
36
-
Ser
GCT
[ENA]
¢þ
>WENV170625852
FUWD013207402
[FUWD] metagenome; unknown
461
370
-
Ser
GCT
[ENA]
¢þ
>WENV170634071
FUWD013409099
[FUWD] metagenome; unknown
461
370
-
Ser
GCT
[ENA]
¢þ
>WENV170713122
LNFM01024256
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1918
1829
-
Ser
GCT
[ENA]
¢þ
>C181001429
AP017315
Actinomycetota
Microcella alkaliphila JAM AC0309 [AP017315]
443880
443971
+
Ser
GCT
-
¡û
>C181002054
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
1356653
1356562
-
Ser
GCT
-
¡û
>C181092799
CP023994
Actinomycetota
Aurantimicrobium photophilum MWH-Mo1 [CP023994]
81788
81879
+
Ser
GCT
-
¡û
>C181143917
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
223098
223189
+
Ser
GCT
-
¡û
>C181194452
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
71951
72042
+
Ser
GCT
-
¡û
>C191101020
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
364718
364629
-
Ser
GCT
-
¡û
>C191130403
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
339599
339688
+
Ser
GCT
-
¡û
>W1810569059
QEFB01000018
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
236194
236103
-
Ser
GCT
[ENA]
¡û
>W1610738565
LMPA01000004
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
61091
61002
-
Ser
GCT
[ENA]
¡û
>W1610754119
LNFD01000401
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
5212
5301
+
Ser
GCT
[ENA]
¡û
>W1610853870
LQGY01000034
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
33851
33940
+
Ser
GCT
[ENA]
¡û
>W1610981926
LWCT01000049
Actinomycetota
Plantibacter sp. H53 [LWCT]
144033
143944
-
Ser
GCT
[ENA]
¡û
>W1710570897
FOVM01000001
Actinomycetota
Mycetocola miduiensis [FOVM]
424388
424297
-
Ser
GCT
[ENA]
¡û
>W1710608092
FXAP01000006
Actinomycetota
Plantibacter flavus [FXAP]
87185
87274
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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