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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106361 (76 seq.)
>W1710919679
LNXV01000036
Gammaproteobacteria
Legionella brunensis [LNXV]
347786
347702
-
Leu
TAG
[ENA]
¡û
>W1710919882
LNYA01000032
Gammaproteobacteria
Legionella erythra [LNYA]
86487
86571
+
Leu
TAG
[ENA]
¡û
>W1710919921
LNYB01000082
Gammaproteobacteria
Legionella feeleii [LNYB]
31050
30966
-
Leu
TAG
[ENA]
¡û
>W1710920074
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
829020
829104
+
Leu
TAG
[ENA]
¡û
>W1710920116
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
2140620
2140704
+
Leu
TAG
[ENA]
¡û
>W1710920195
LNYI01000038
Gammaproteobacteria
Legionella lansingensis [LNYI]
9619
9703
+
Leu
TAG
[ENA]
¡û
>W1710920327
LNYL01000050
Gammaproteobacteria
Legionella maceachernii [LNYL]
150905
150989
+
Leu
TAG
[ENA]
¡û
>W1710920445
LNYO01000024
Gammaproteobacteria
Legionella nautarum [LNYO]
312234
312150
-
Leu
TAG
[ENA]
¡û
>W1710920593
LNYS01000008
Gammaproteobacteria
Legionella quinlivanii [LNYS]
384641
384557
-
Leu
TAG
[ENA]
¡û
>W1710920814
LNYX01000031
Gammaproteobacteria
Legionella spiritensis [LNYX]
10910
10826
-
Leu
TAG
[ENA]
¡û
>W1711252421
LYOZ01000052
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
203327
203243
-
Leu
TAG
[ENA]
¡û
>W1711573348
MNCZ01000105
Gammaproteobacteria
Gammaproteobacteria bacterium 13_2_20CM_66_19 [MNCZ]
11012
10928
-
Leu
TAG
[ENA]
¡û
>W1711767952
MVBK01000004
Gammaproteobacteria
Thioalkalivibrio denitrificans [MVBK]
4183
4267
+
Leu
TAG
[ENA]
¡û
>W131163166
AQZO01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
3019700
3019784
+
Leu
TAG
[ENA]
¡û
>W131175482
ARJH01000049
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus ALJ17 [ARJH]
26972
26888
-
Leu
TAG
[ENA]
¡û
>WENV180267364
OBEQ011847085
[OBEQ] groundwater metagenome; groundwater
34419
34336
-
Leu
TAG
[ENA]
¢þ
>WENV180293769
OBIY01001031
[OBIY] beach sand metagenome; beach sand
496
580
+
Leu
TAG
[ENA]
¢þ
>WENV180309549
OBJS01006912
[OBJS] beach sand metagenome; beach sand
1415
1331
-
Leu
TAG
[ENA]
¢þ
>WENV180343145
OBLK01000020
[OBLK] soil metagenome; Clay
7159
7075
-
Leu
TAG
[ENA]
¢þ
>WENV180359881
OBNS01056021
[OBNS] marine metagenome; Seawater
213
297
+
Leu
TAG
[ENA]
¢þ
>WENV180584882
OCOJ01614079
[OCOJ] soil metagenome; soil
128
44
-
Leu
TAG
[ENA]
¢þ
>W141094364
AVCK01000063
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
11380
11296
-
Leu
TAG
[ENA]
¡û
>WENV181169993
OEIV010018808
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
339
255
-
Leu
TAG
[ENA]
¢þ
>WENV181295694
OFHJ01000191
[OFHJ] soil metagenome; Clay
11920
11836
-
Leu
TAG
[ENA]
¢þ
>WENV181295881
OFHJ01001525
[OFHJ] soil metagenome; Clay
1187
1103
-
Leu
TAG
[ENA]
¢þ
>W141245596
CALJ01000098
Gammaproteobacteria
Legionella tunisiensis LegM [CALJ]
11902
11986
+
Leu
TAG
[ENA]
¡û
>WENV182546122
OJBO01001150
[OJBO] seawater metagenome; Sea water
645
729
+
Leu
TAG
[ENA]
¢þ
>WENV182546802
OJBP01004148
[OJBP] seawater metagenome; Sea water
1215
1131
-
Leu
TAG
[ENA]
¢þ
>WENV182589184
OJIA01000105
[OJIA] seawater metagenome; Sea water
2557
2473
-
Leu
TAG
[ENA]
¢þ
>W141273133
CCSB01000002
Gammaproteobacteria
Legionella massiliensis [CCSB]
516239
516155
-
Leu
TAG
[ENA]
¡û
>WENV170013779
AUZZ01005975
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
399
315
-
Leu
TAG
[ENA]
¢þ
>WENV170367042
CETO01173936
[CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3156
3072
-
Leu
TAG
[ENA]
¢þ
>WENV170371947
CETS01051627
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1104
1188
+
Leu
TAG
[ENA]
¢þ
>WENV170455345
CEVA01102984
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
140
224
+
Leu
TAG
[ENA]
¢þ
>WENV170577903
FSSH01002527
[FSSH] freshwater metagenome; drinking water
3393
3309
-
Leu
TAG
[ENA]
¢þ
>C181225051
LT906451
Gammaproteobacteria
Legionella lansingensis NCTC12830 [LT906451]
626197
626281
+
Leu
TAG
-
¡û
>C181225363
LT906457
Gammaproteobacteria
Legionella spiritensis NCTC11990 [LT906457]
899497
899581
+
Leu
TAG
-
¡û
>C191073631
CP031093
Gammaproteobacteria
Hydrocarboniclastica marina soil36-7 [CP031093]
1485820
1485904
+
Leu
TAG
-
¡û
>C191159136
CP038273
Gammaproteobacteria
Legionella israelensis Bercovier 4 [CP038273]
643710
643626
-
Leu
TAG
-
¡û
>C191209820
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
649905
649989
+
Leu
TAG
-
¡û
>W141558801
JHWF01000022
Gammaproteobacteria
Legionella lansingensis DSM 19556 = ATCC 49751 [JHWF]
44231
44147
-
Leu
TAG
[ENA]
¡û
>W09113265
ABYM01000016
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
49520
49436
-
Leu
TAG
[ENA]
¡û
>W1910371612
FUFP01000020
Gammaproteobacteria
Halomonas utahensis P-halo [FUFP]
672421
672337
-
Leu
TAG
[ENA]
¡û
>C09110590
CP001339
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGr7 HL-EbGR7 [CP001339]
1008643
1008727
+
Leu
TAG
[Ensembl]
¡û
>W1910729181
MGYG01000003
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_43_28 [MGYG]
10909
10990
+
Leu
TAG
[ENA]
¡û
>W1910814195
MVJN01000009
Gammaproteobacteria
Legionella quinlivanii ID143958 [MVJN]
69502
69586
+
Leu
TAG
[ENA]
¡û
>W1910896624
NFZV01000004
Gammaproteobacteria
Alkalilimnicola ehrlichii AK92 [NFZV]
85108
85192
+
Leu
TAG
[ENA]
¡û
>W1910896674
NFZW01000005
Gammaproteobacteria
Alkalilimnicola ehrlichii AK93 [NFZW]
85499
85583
+
Leu
TAG
[ENA]
¡û
>W1911662098
QFGD01000001
Gammaproteobacteria
Legionella taurinensis WH05 [QFGD]
376075
375991
-
Leu
TAG
[ENA]
¡û
>W1911662274
QFGH01000007
Gammaproteobacteria
Legionella taurinensis WH01 [QFGH]
48760
48844
+
Leu
TAG
[ENA]
¡û
>W1911662303
QFGI01000001
Gammaproteobacteria
Legionella taurinensis WC04 [QFGI]
376075
375991
-
Leu
TAG
[ENA]
¡û
>W1911824205
QZWB01000001
Gammaproteobacteria
Legionella taurinensis 4570-18-6 [QZWB]
156926
157010
+
Leu
TAG
[ENA]
¡û
>W1810531389
QCXL01000001
Gammaproteobacteria
Legionella taurinensis Genessee02 [QCXL]
376075
375991
-
Leu
TAG
[ENA]
¡û
>C151016180
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
2907843
2907759
-
Leu
TAG
[Ensembl]
¡û
>ENV09003506
ADGO01072244
Compost metagenome contig00001
231
315
+
Leu
TAG
[ENA]
¡û
>W11178597
AGFB01000007
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
10263
10179
-
Leu
TAG
[ENA]
¡û
>W1610580135
LBAX01000007
Gammaproteobacteria
Legionella jordanis [LBAX]
88287
88203
-
Leu
TAG
[ENA]
¡û
>W1610583887
LBHK01000008
Gammaproteobacteria
Legionella feeleii [LBHK]
93281
93365
+
Leu
TAG
[ENA]
¡û
>W1610584631
LCUB01000002
Gammaproteobacteria
Legionella micdadei [LCUB]
119152
119236
+
Leu
TAG
[ENA]
¡û
>W1610777577
LNXV01000036
Gammaproteobacteria
Legionella brunensis [LNXV]
347786
347702
-
Leu
TAG
[ENA]
¡û
>W1610777780
LNYA01000032
Gammaproteobacteria
Legionella erythra [LNYA]
86487
86571
+
Leu
TAG
[ENA]
¡û
>W1610777819
LNYB01000082
Gammaproteobacteria
Legionella feeleii [LNYB]
31050
30966
-
Leu
TAG
[ENA]
¡û
>W1610777972
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
829020
829104
+
Leu
TAG
[ENA]
¡û
>W1610778014
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
2140620
2140704
+
Leu
TAG
[ENA]
¡û
>W1610778093
LNYI01000038
Gammaproteobacteria
Legionella lansingensis [LNYI]
9619
9703
+
Leu
TAG
[ENA]
¡û
>W1610778225
LNYL01000050
Gammaproteobacteria
Legionella maceachernii [LNYL]
150905
150989
+
Leu
TAG
[ENA]
¡û
>W1610778343
LNYO01000024
Gammaproteobacteria
Legionella nautarum [LNYO]
312234
312150
-
Leu
TAG
[ENA]
¡û
>W1610778491
LNYS01000008
Gammaproteobacteria
Legionella quinlivanii [LNYS]
384641
384557
-
Leu
TAG
[ENA]
¡û
>W1610778712
LNYX01000031
Gammaproteobacteria
Legionella spiritensis [LNYX]
10910
10826
-
Leu
TAG
[ENA]
¡û
>W1611017209
LYOZ01000052
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
203327
203243
-
Leu
TAG
[ENA]
¡û
>W1710507463
FMVH01000016
Gammaproteobacteria
Legionella israelensis DSM 19235 [FMVH]
34152
34068
-
Leu
TAG
[ENA]
¡û
>W1710513559
FNAG01000001
Gammaproteobacteria
Aquimonas voraii [FNAG]
168122
168206
+
Leu
TAG
[ENA]
¡û
>W1710601514
FUXJ01000003
Gammaproteobacteria
Legionella maceachernii [FUXJ]
256063
256147
+
Leu
TAG
[ENA]
¡û
>W1710699147
LBAX01000007
Gammaproteobacteria
Legionella jordanis [LBAX]
88287
88203
-
Leu
TAG
[ENA]
¡û
>W1710703035
LBHK01000008
Gammaproteobacteria
Legionella feeleii [LBHK]
93281
93365
+
Leu
TAG
[ENA]
¡û
>W1710703822
LCUB01000002
Gammaproteobacteria
Legionella micdadei [LCUB]
119152
119236
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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