This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106563 (98 seq.)
>C171059700
CP017260
Bacteroidota
Formosa sp. Hel1_33_131 [CP017260]
897233
897317
+
Leu
CAA
-
¡û
>W131211444
ATMR01000206
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
55424
55508
+
Leu
CAA
[ENA]
¡û
>W131224956
AUDE01000021
Bacteroidota
Psychroserpens burtonensis DSM 12212 [AUDE]
25408
25490
+
Leu
CAA
[ENA]
¡û
>W131229878
AUHD01000002
Bacteroidota
Gelidibacter mesophilus DSM 14095 [AUHD]
138708
138792
+
Leu
CAA
[ENA]
¡û
>WENV180214624
OBAP01022885
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
195
113
-
Leu
CAA
[ENA]
¡û
>WENV180356832
OBNL01042781
[OBNL] marine metagenome; ENVO:00002010
173
91
-
Leu
CAA
[ENA]
¡û
>WENV180362882
OBNX01065627
[OBNX] marine metagenome; ENVO:00002010
134
52
-
Leu
CAA
[ENA]
¡û
>WENV180383134
OBOU01002782
[OBOU] marine metagenome; ENV:00002010
1062
1144
+
Leu
CAA
[ENA]
¡û
>WENV180383229
OBOU01012182
[OBOU] marine metagenome; ENV:00002010
696
778
+
Leu
CAA
[ENA]
¡û
>WENV180396602
OBPV01032021
[OBPV] marine metagenome; ENVO:00002010
163
81
-
Leu
CAA
[ENA]
¡û
>WENV180397736
OBPZ01002316
[OBPZ] marine metagenome; ENVO:00002010
1041
1123
+
Leu
CAA
[ENA]
¡û
>WENV181325511
OFLJ01002664
[OFLJ] seawater metagenome; seawater
2220
2302
+
Leu
CAA
[ENA]
¡û
>WENV182540445
OJAJ01001628
[OJAJ] seawater metagenome; Sea water
1306
1388
+
Leu
CAA
[ENA]
¡û
>WENV182540928
OJAQ01000494
[OJAQ] seawater metagenome; Sea water
1842
1924
+
Leu
CAA
[ENA]
¡û
>WENV182548620
OJBW01008185
[OJBW] seawater metagenome; Sea water
634
716
+
Leu
CAA
[ENA]
¡û
>WENV182552369
OJCJ01039969
[OJCJ] seawater metagenome; Sea water
360
442
+
Leu
CAA
[ENA]
¡û
>WENV182553582
OJCR01012918
[OJCR] seawater metagenome; Sea water
1231
1313
+
Leu
CAA
[ENA]
¡û
>WENV182556574
OJDG01018971
[OJDG] seawater metagenome; Sea water
855
937
+
Leu
CAA
[ENA]
¡û
>WENV182557972
OJDL01001139
[OJDL] seawater metagenome; Sea water
1267
1185
-
Leu
CAA
[ENA]
¡û
>WENV182558397
OJDM01001394
[OJDM] seawater metagenome; Sea water
2466
2548
+
Leu
CAA
[ENA]
¡û
>WENV182561061
OJDV01003222
[OJDV] seawater metagenome; Sea water
468
550
+
Leu
CAA
[ENA]
¡û
>WENV182561664
OJDX01000466
[OJDX] seawater metagenome; Sea water
4766
4848
+
Leu
CAA
[ENA]
¡û
>WENV182562070
OJDY01004613
[OJDY] seawater metagenome; Sea water
739
821
+
Leu
CAA
[ENA]
¡û
>WENV182562876
OJEA01006858
[OJEA] seawater metagenome; Sea water
959
1041
+
Leu
CAA
[ENA]
¡û
>WENV182563225
OJEB01002471
[OJEB] seawater metagenome; Sea water
410
328
-
Leu
CAA
[ENA]
¡û
>WENV182564231
OJEE01000764
[OJEE] seawater metagenome; Sea water
4705
4787
+
Leu
CAA
[ENA]
¡û
>WENV182564508
OJEF01000661
[OJEF] seawater metagenome; Sea water
295
213
-
Leu
CAA
[ENA]
¡û
>WENV182565258
OJEH01000889
[OJEH] seawater metagenome; Sea water
7241
7323
+
Leu
CAA
[ENA]
¡û
>WENV182569172
OJEY01001619
[OJEY] seawater metagenome; Sea water
1119
1201
+
Leu
CAA
[ENA]
¡û
>WENV182576353
OJFX01013186
[OJFX] seawater metagenome; Sea water
681
599
-
Leu
CAA
[ENA]
¡û
>WENV182576772
OJFY01006185
[OJFY] seawater metagenome; Sea water
536
618
+
Leu
CAA
[ENA]
¡û
>WENV182578003
OJGM01000391
[OJGM] seawater metagenome; Sea water
841
759
-
Leu
CAA
[ENA]
¡û
>WENV182580724
OJGW01009177
[OJGW] seawater metagenome; Sea water
1746
1828
+
Leu
CAA
[ENA]
¡û
>WENV182581500
OJGX01010083
[OJGX] seawater metagenome; Sea water
223
305
+
Leu
CAA
[ENA]
¡û
>WENV182582198
OJHA01000793
[OJHA] seawater metagenome; Sea water
2092
2010
-
Leu
CAA
[ENA]
¡û
>WENV182582598
OJHB01002709
[OJHB] seawater metagenome; Sea water
85
3
-
Leu
CAA
[ENA]
¡û
>WENV182583069
OJHD01000064
[OJHD] seawater metagenome; Sea water
706
624
-
Leu
CAA
[ENA]
¡û
>WENV182587686
OJHN01001583
[OJHN] seawater metagenome; Sea water
1669
1587
-
Leu
CAA
[ENA]
¡û
>WENV182590750
OJIK01000236
[OJIK] seawater metagenome; Sea water
16320
16402
+
Leu
CAA
[ENA]
¡û
>WENV182592765
OJIR01021486
[OJIR] seawater metagenome; Sea water
531
449
-
Leu
CAA
[ENA]
¡û
>WENV182593994
OJIV01000011
[OJIV] seawater metagenome; Sea water
87201
87283
+
Leu
CAA
[ENA]
¡û
>WENV183054700
OLGU01001350
[OLGU] seawater metagenome; Sea water
4657
4739
+
Leu
CAA
[ENA]
¡û
>WENV183055062
OLGW01002879
[OLGW] seawater metagenome; Sea water
89
7
-
Leu
CAA
[ENA]
¡û
>WENV183056847
OLHJ01033333
[OLHJ] seawater metagenome; Sea water
591
509
-
Leu
CAA
[ENA]
¡û
>WENV183059405
OLHU01002392
[OLHU] seawater metagenome; Sea water
1318
1236
-
Leu
CAA
[ENA]
¡û
>WENV183060262
OLHX01000615
[OLHX] seawater metagenome; Sea water
1533
1451
-
Leu
CAA
[ENA]
¡û
>WENV183060795
OLHY01005282
[OLHY] seawater metagenome; Sea water
2499
2581
+
Leu
CAA
[ENA]
¡û
>WENV183061540
OLHZ01027578
[OLHZ] seawater metagenome; Sea water
478
560
+
Leu
CAA
[ENA]
¡û
>WENV183065001
OLII01009006
[OLII] seawater metagenome; Sea water
1356
1438
+
Leu
CAA
[ENA]
¡û
>WENV183619376
OOFQ01002669
[OOFQ] marine metagenome; seawater
122
40
-
Leu
CAA
[ENA]
¡û
>WENV183625227
OOGF01005697
[OOGF] marine metagenome; seawater
1129
1211
+
Leu
CAA
[ENA]
¡û
>WENV170567734
FLMP01004564
[FLMP] seawater metagenome; seawater
2344
2260
-
Leu
CAA
[ENA]
¡û
>WENV170570145
FLMP01435392
[FLMP] seawater metagenome; seawater
384
300
-
Leu
CAA
[ENA]
¡û
>WENV170605298
FUWD010468522
[FUWD] metagenome; unknown
85
1
-
Leu
CAA
[ENA]
¡û
>WENV170825031
MDSY01086567
[MDSY] marine metagenome; seawater
83
1
-
Leu
CAA
[ENA]
¡û
>WENV170953834
MEHZ011666127
[MEHZ] marine metagenome; marine surface water
276
192
-
Leu
CAA
[ENA]
¡û
>C191083440
CP031963
Bacteroidota
Aquimarina sp. BL5 [CP031963]
2930733
2930651
-
Leu
CAA
-
¡û
>W1810672047
QJTD01000001
Bacteroidota
Winogradskyella epiphytica CECT 7945 [QJTD]
1042185
1042267
+
Leu
CAA
[ENA]
¡û
>W1810759606
QPJO01000001
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
192691
192609
-
Leu
CAA
[ENA]
¡û
>W1810787627
QRDV01000003
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
215881
215799
-
Leu
CAA
[ENA]
¡û
>W1810788347
QREI01000005
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
239024
238942
-
Leu
CAA
[ENA]
¡û
>W1810885405
QUNH01000001
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
376206
376124
-
Leu
CAA
[ENA]
¡û
>C151002362
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
1179140
1179058
-
Leu
CAA
[Ensembl]
¡û
>W2010597055
JABFDC010000001
Bacteroidota
Winogradskyella undariae Ha325 [JABFDC]
191082
191164
+
Leu
CAA
[ENA]
¡û
>W2010597099
JABFDD010000004
Bacteroidota
Winogradskyella undariae Z3185 [JABFDD]
230011
229929
-
Leu
CAA
[ENA]
¡û
>W2010597183
JABFDF010000005
Bacteroidota
Winogradskyella sp. HL116 [JABFDF]
236234
236152
-
Leu
CAA
[ENA]
¡û
>W2010597222
JABFDG010000003
Bacteroidota
Winogradskyella sp. HL634 [JABFDG]
129756
129838
+
Leu
CAA
[ENA]
¡û
>W2010597275
JABFDI010000008
Bacteroidota
Winogradskyella pacifica R3187 [JABFDI]
72173
72091
-
Leu
CAA
[ENA]
¡û
>W2010597307
JABFDJ010000001
Bacteroidota
Winogradskyella sp. Z738 [JABFDJ]
738833
738751
-
Leu
CAA
[ENA]
¡û
>W2010597346
JABFDK010000001
Bacteroidota
Winogradskyella sp. Z3138 [JABFDK]
1478900
1478982
+
Leu
CAA
[ENA]
¡û
>W2010598095
JABFHO010000001
Bacteroidota
Winogradskyella sp. Z963 [JABFHO]
1176731
1176813
+
Leu
CAA
[ENA]
¡û
>W2010612680
JABRWP010000001
Bacteroidota
Winogradskyella eckloniae EC29 [JABRWP]
489092
489174
+
Leu
CAA
[ENA]
¡û
>W2010631857
JABTEL010000007
Bacteroidota
Winogradskyella undariae CCUG 63832 [JABTEL]
44158
44240
+
Leu
CAA
[ENA]
¡û
>W2011367421
RAZW01000017
Bacteroidota
Aquimarina sp. BL5 [RAZW]
3967
3885
-
Leu
CAA
[ENA]
¡û
>W2011542318
SDDZ01000001
Bacteroidota
Gelidibacter gilvus IC158 [SDDZ]
150970
151052
+
Leu
CAA
[ENA]
¡û
>W2012107704
VOSB01000019
Bacteroidota
Psychroserpens burtonensis ACAM 167 [VOSB]
25206
25288
+
Leu
CAA
[ENA]
¡û
>W2012131010
VSKK01000001
Bacteroidota
Bizionia myxarmorum ADA-4 [VSKK]
372147
372065
-
Leu
CAA
[ENA]
¡û
>W2012151083
VTZU01000004
Bacteroidota
Aquimarina sp. RZ0 [VTZU]
145906
145824
-
Leu
CAA
[ENA]
¡û
>W2110046647
BMWQ01000001
Bacteroidota
Winogradskyella epiphytica KCTC 12220 [BMWQ]
915391
915473
+
Leu
CAA
[ENA]
¡û
>W2110326464
JADILU010000005
Bacteroidota
Arcticiflavibacter luteus SM1212 [JADILU]
199180
199262
+
Leu
CAA
[ENA]
¡û
>W2110361146
JADOET010000005
Bacteroidota
Winogradskyella marina F6397 [JADOET]
101392
101474
+
Leu
CAA
[ENA]
¡û
>W2110532320
JAGEVG010000002
Bacteroidota
Gelidibacter pelagius DF109 [JAGEVG]
127873
127791
-
Leu
CAA
[ENA]
¡û
>W2110611559
JAHKPN010000012
Bacteroidota
Winogradskyella psychrotolerans E3R09 [JAHKPN]
136015
135933
-
Leu
CAA
[ENA]
¡û
>W2110611777
JAHKPS010000028
Bacteroidota
Winogradskyella psychrotolerans D3R19 [JAHKPS]
234698
234616
-
Leu
CAA
[ENA]
¡û
>W2110668726
JAICBG010000005
Bacteroidota
Winogradskyella sp. SM1960 [JAICBG]
125159
125241
+
Leu
CAA
[ENA]
¡û
>C211117918
CP058981
Bacteroidota
Winogradskyella sp. HaHa_3_26 [CP058981]
1575618
1575536
-
Leu
CAA
-
¡û
>C211132371
CP060297
Bacteroidota
Winogradskyella sp. PAMC22761 [CP060297]
3013854
3013936
+
Leu
CAA
-
¡û
>C231575649
CP116221
Bacteroidota
Psychroserpens sp. MSW6 [CP116221]
38756
38838
+
Leu
CAA
-
¡û
>C241053848
CP040813
Bacteroidota
Oceanihabitans sp. IOP_32 [CP040813]
1711775
1711693
-
Leu
CAA
-
¡û
>C241114972
CP047028
Bacteroidota
Formosa sp. L2A11 [CP047028]
1380954
1381036
+
Leu
CAA
-
¡û
>C241155591
CP053352
Bacteroidota
Winogradskyella helgolandensis Z354 [CP053352]
3726568
3726486
-
Leu
CAA
-
¡û
>W1511388601
JSWG01000004
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
69671
69755
+
Leu
CAA
[ENA]
¡û
>W1511505198
JXJO01000010
Bacteroidota
Psychroserpens damuponensis JCM 17632 [JXJO]
175761
175843
+
Leu
CAA
[ENA]
¡û
>WENV046683
AACY022615837
Marine microbial communities from Global Ocean Sampling (GOS)
607
693
+
Leu
CAA
[ENA]
>W11169940
AFPB01000056
Bacteroidota
Aquimarina agarivorans HQM9 [AFPB]
9430
9512
+
Leu
CAA
[ENA]
¡û
>W11176839
AFXZ01000019
Bacteroidota
Bizionia argentinensis JUB59 [AFXZ]
109792
109710
-
Leu
CAA
[ENA]
¡û
>W1710516979
FNCZ01000001
Bacteroidota
Winogradskyella thalassocola [FNCZ]
252869
252785
-
Leu
CAA
[ENA]
¡û
>W1710543567
FOAB01000008
Bacteroidota
Aquimarina amphilecti [FOAB]
50979
50895
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK