This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106802 (33 seq.)
>C171019495
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
3817934
3817850
-
Tyr
GTA
-
¡û
>C171019498
CP013018
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP013018]
3817672
3817588
-
Tyr
GTA
-
¡û
>C171019574
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
3816945
3816861
-
Tyr
GTA
-
¡û
>C171019577
CP013019
Bacillota
Clostridium pasteurianum M150B [CP013019]
3816683
3816599
-
Tyr
GTA
-
¡û
>WENV180444448
OBWZ01011848
[OBWZ] human gut metagenome; faeces
503
587
+
Tyr
GTA
[ENA]
¢þ
>WENV180504879
OCAO01000127
[OCAO] human gut metagenome; faeces
50692
50776
+
Tyr
GTA
[ENA]
¢þ
>WENV180504882
OCAO01000127
[OCAO] human gut metagenome; faeces
50957
51041
+
Tyr
GTA
[ENA]
¢þ
>WENV180504884
OCAO01000127
[OCAO] human gut metagenome; faeces
51165
51249
+
Tyr
GTA
[ENA]
¢þ
>WENV180506857
OCAS01019018
[OCAS] human gut metagenome; faeces
85
1
-
Tyr
GTA
[ENA]
¢þ
>WENV182201325
OHPM01000294
[OHPM] human gut metagenome; feces
499
415
-
Tyr
GTA
[ENA]
¢þ
>WENV182601993
OJJJ01002657
[OJJJ] metagenome; faeces
2688
2604
-
Tyr
GTA
[ENA]
¢þ
>W141427580
JENM01000055
Bacillota
Clostridium novyi A str. BKT29909 [JENM]
1717
1801
+
Tyr
GTA
[ENA]
¡û
>W141427582
JENM01000055
Bacillota
Clostridium novyi A str. BKT29909 [JENM]
1927
2011
+
Tyr
GTA
[ENA]
¡û
>W141428423
JENX01000041
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
33786
33702
-
Tyr
GTA
[ENA]
¡û
>W141428425
JENX01000041
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
33578
33494
-
Tyr
GTA
[ENA]
¡û
>W141803787
JPGY01000008
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
157683
157767
+
Tyr
GTA
[ENA]
¡û
>W1810052550
PDCJ01000004
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
246724
246640
-
Tyr
GTA
[ENA]
¡û
>W1810052553
PDCJ01000004
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
246459
246375
-
Tyr
GTA
[ENA]
¡û
>W1810052555
PDCJ01000004
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
246251
246167
-
Tyr
GTA
[ENA]
¡û
>C151047071
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
3816974
3816890
-
Tyr
GTA
[Ensembl]
¡û
>C151047074
CP009267
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009267]
3816712
3816628
-
Tyr
GTA
[Ensembl]
¡û
>C151047150
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
3817182
3817098
-
Tyr
GTA
[Ensembl]
¡û
>C151047153
CP009268
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [CP009268]
3816920
3816836
-
Tyr
GTA
[Ensembl]
¡û
>C11104930
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2455172
2455088
-
Tyr
GTA
[Ensembl]
¡û
>C11104932
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2454964
2454880
-
Tyr
GTA
[Ensembl]
¡û
>W1511707425
LGVB01000015
Bacillota
Clostridium sp. DMHC 10 [LGVB]
1854758
1854842
+
Tyr
GTA
[ENA]
¡û
>W1511707428
LGVB01000015
Bacillota
Clostridium sp. DMHC 10 [LGVB]
1855022
1855106
+
Tyr
GTA
[ENA]
¡û
>WENV082823
BAAW01002289
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
1251
1165
-
Tyr
GTA
[ENA]
>WENV082826
BAAW01002289
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
1516
1430
-
Tyr
GTA
[ENA]
>W1710605766
FWXH01000022
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
257
173
-
Tyr
GTA
[ENA]
¡û
>W1710605776
FWXH01000029
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
174
258
+
Tyr
GTA
[ENA]
¡û
>W1710755002
LHYX01000004
Bacillota
Clostridium botulinum [LHYX]
63721
63805
+
Tyr
GTA
[ENA]
¡û
>W1710755004
LHYX01000004
Bacillota
Clostridium botulinum [LHYX]
63931
64015
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK