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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106823 (75 seq.)
>W1710777108
LJAJ01000120
Bacillota
Geobacillus sp. BCO2 [LJAJ]
738
656
-
Leu
TAG
[ENA]
¡û
>W1710986676
LPUG01000012
Bacillota
Anoxybacillus sp. P3H1B [LPUG]
813
897
+
Leu
TAG
[ENA]
¡û
>W1710986716
LPUG01000017
Bacillota
Anoxybacillus sp. P3H1B [LPUG]
104103
104187
+
Leu
TAG
[ENA]
¡û
>W1711003711
LQIE01000020
Bacillota
Geobacillus stearothermophilus [LQIE]
880
798
-
Leu
TAG
[ENA]
¡û
>W1711020649
LQYS01000123
Bacillota
Parageobacillus caldoxylosilyticus [LQYS]
128594
128511
-
Leu
TAG
[ENA]
¡û
>W1711020685
LQYS01000132
Bacillota
Parageobacillus caldoxylosilyticus [LQYS]
51280
51364
+
Leu
TAG
[ENA]
¡û
>W1711020881
LQYV01000127
Bacillota
Geobacillus stearothermophilus [LQYV]
44278
44360
+
Leu
TAG
[ENA]
¡û
>W1711144234
LVHZ01000245
Bacillota
Geobacillus stearothermophilus 15 [LVHZ]
469
551
+
Leu
TAG
[ENA]
¡û
>W1711178914
LWHE01000050
Bacillota
Geobacillus subterraneus [LWHE]
924
842
-
Leu
TAG
[ENA]
¡û
>W1711775147
MVKA01000016
Bacillota
Geobacillus sp. LEMMY01 [MVKA]
1100
1019
-
Leu
TAG
[ENA]
¡û
>W1711926631
NADR01000016
Bacillota
Geobacillus sp. 46C-IIa [NADR]
57728
57810
+
Leu
TAG
[ENA]
¡û
>W1711930380
NAGD01000037
Bacillota
Geobacillus thermoleovorans thermocatenulatus [NAGD]
847
765
-
Leu
TAG
[ENA]
¡û
>W1711930458
NAGE01000047
Bacillota
Geobacillus zalihae thermocatenulatus [NAGE]
20777
20859
+
Leu
TAG
[ENA]
¡û
>W1711930533
NAGF01000042
Bacillota
Geobacillus zalihae thermocatenulatus [NAGF]
825
743
-
Leu
TAG
[ENA]
¡û
>W1711940638
NASY01000002
Bacillota
Anoxybacillus sp. UARK-01 [NASY]
2256
2172
-
Leu
TAG
[ENA]
¡û
>W1711940652
NASY01000031
Bacillota
Anoxybacillus sp. UARK-01 [NASY]
19
103
+
Leu
TAG
[ENA]
¡û
>W1711940722
NASY01000058
Bacillota
Anoxybacillus sp. UARK-01 [NASY]
30744
30828
+
Leu
TAG
[ENA]
¡û
>C171056311
CP017071
Bacillota
Geobacillus thermoleovorans FJAT-2391 [CP017071]
158584
158666
+
Leu
TAG
-
¡û
>C171066187
CP017694
Bacillota
Geobacillus thermodenitrificans KCTC3902 [CP017694]
1598909
1598827
-
Leu
TAG
-
¡û
>W131205144
ATCO01000007
Bacillota
Geobacillus sp. WSUCF1 [ATCO]
15325
15407
+
Leu
TAG
[ENA]
¡û
>W131241920
BASG01000095
Bacillota
Geobacillus kaustophilus GBlys [BASG]
1477
1559
+
Leu
TAG
[ENA]
¡û
>C010165
CP000557
Bacillota
Geobacillus thermodenitrificans NG80-2 [CP000557]
225398
225479
+
Leu
TAG
[Ensembl]
¡û
>W141090623
AUXP01000068
Bacillota
Geobacillus sp. A8 [AUXP]
707
625
-
Leu
TAG
[ENA]
¡û
>W08011433
ABVH01000013
Bacillota
Geobacillus thermodenitrificans G11MC16 [ABVH]
1117
1035
-
Leu
TAG
[ENA]
¡û
>W141186789
AYKT01000014
Bacillota
Geobacillus thermodenitrificans subsp. thermodenitrificans DSM 465 [AYKT]
550
468
-
Leu
TAG
[ENA]
¡û
>W141234470
BAWO01000029
Bacillota
Parageobacillus caldoxylosilyticus NBRC 107762 [BAWO]
93767
93851
+
Leu
TAG
[ENA]
¡û
>W141234492
BAWO01000054
Bacillota
Parageobacillus caldoxylosilyticus NBRC 107762 [BAWO]
44223
44140
-
Leu
TAG
[ENA]
¡û
>WENV182925320
OKUI01042014
[OKUI] human gut metagenome; feces
83
-1
-
Leu
TAG
[ENA]
¢þ
>WENV183360704
OLXI01077260
[OLXI] human gut metagenome; feces
402
486
+
Leu
TAG
[ENA]
¢þ
>W141462705
JFHZ01000118
Bacillota
Geobacillus thermocatenulatus GS-1 [JFHZ]
776
694
-
Leu
TAG
[ENA]
¡û
>C191162554
CP038860
Bacillota
Geobacillus kaustophilus NBRC 102445 [CP038860]
836696
836778
+
Leu
TAG
-
¡û
>W141556897
JHUR01000006
Bacillota
Geobacillus sp. CAMR12739 [JHUR]
62851
62933
+
Leu
TAG
[ENA]
¡û
>W141556953
JHUS01000006
Bacillota
Geobacillus sp. CAMR5420 [JHUS]
69747
69829
+
Leu
TAG
[ENA]
¡û
>W09119833
ACED01000001
Bacillota
Geobacillus sp. Y412MC61 [ACED]
1794
1712
-
Leu
TAG
[ENA]
¡û
>W141807350
JPOI01000001
Bacillota
Geobacillus vulcani PSS1 [JPOI]
705026
704945
-
Leu
TAG
[ENA]
¡û
>W141811438
JPYV01000034
Bacillota
Geobacillus stearothermophilus [JPYV]
23849
23931
+
Leu
TAG
[ENA]
¡û
>C141004583
CP006254
Bacillota
Geobacillus genomosp. 3 JF8 [CP006254]
219743
219825
+
Leu
TAG
[Ensembl]
¡û
>W1910891572
NEWL01000009
Bacillota
Geobacillus uzenensis BGSC 92A1 [NEWL]
253352
253270
-
Leu
TAG
[ENA]
¡û
>W1810143565
PIJF01000034
Bacillota
Geobacillus sp. WSUCF-018B [PIJF]
793
711
-
Leu
TAG
[ENA]
¡û
>W1810143611
PIJG01000007
Bacillota
Geobacillus sp. Manikaran-105 [PIJG]
73323
73405
+
Leu
TAG
[ENA]
¡û
>C10107166
CP002050
Bacillota
Geobacillus sp. C56-T3 [CP002050]
241229
241311
+
Leu
TAG
[Ensembl]
¡û
>C10107341
CP001794
Bacillota
Geobacillus sp. Y412MC61 [CP001794]
1101500
1101582
+
Leu
TAG
[Ensembl]
¡û
>W1511523074
JYBP01000003
Bacillota
Geobacillus kaustophilus Et7/4 [JYBP]
2824515
2824433
-
Leu
TAG
[ENA]
¡û
>W1511523364
JYCF01000077
Bacillota
Geobacillus kaustophilus Et2/3 [JYCF]
641
559
-
Leu
TAG
[ENA]
¡û
>W1511638188
LDNS01000043
Bacillota
Geobacillus stearothermophilus A1 [LDNS]
1302
1220
-
Leu
TAG
[ENA]
¡û
>W1511638327
LDNT01000164
Bacillota
Geobacillus stearothermophilus P3 [LDNT]
1290
1208
-
Leu
TAG
[ENA]
¡û
>W1511638404
LDNU01000144
Bacillota
Geobacillus stearothermophilus D1 [LDNU]
29499
29581
+
Leu
TAG
[ENA]
¡û
>C121006326
CP003125
Bacillota
Geobacillus thermoleovorans CCB_US3_UF5 [CP003125]
247705
247787
+
Leu
TAG
[Ensembl]
¡û
>C161071498
CP014342
Bacillota
Geobacillus subterraneus KCTC 3922 [CP014342]
3001226
3001144
-
Leu
TAG
[Ensembl]
¡û
>C161088381
CP015435
Bacillota
Anoxybacillus sp. B2M1 b2m1 [CP015435]
2568575
2568491
-
Leu
TAG
-
¡û
>C161088404
CP015435
Bacillota
Anoxybacillus sp. B2M1 b2m1 [CP015435]
2385218
2385134
-
Leu
TAG
-
¡û
>C161088414
CP015435
Bacillota
Anoxybacillus sp. B2M1 b2m1 [CP015435]
2025767
2025683
-
Leu
TAG
-
¡û
>C161088448
CP015436
Bacillota
Anoxybacillus sp. B7M1 b7m1 [CP015436]
2891261
2891345
+
Leu
TAG
[Ensembl]
¡û
>C161088471
CP015436
Bacillota
Anoxybacillus sp. B7M1 b7m1 [CP015436]
3074618
3074702
+
Leu
TAG
[Ensembl]
¡û
>C161088481
CP015436
Bacillota
Anoxybacillus sp. B7M1 b7m1 [CP015436]
3432282
3432366
+
Leu
TAG
[Ensembl]
¡û
>W1610067036
BCQG01000014
Bacillota
Geobacillus jurassicus NBRC 107829 [BCQG]
751
670
-
Leu
TAG
[ENA]
¡û
>C131011196
CP004008
Bacillota
Geobacillus sp. GHH01 [CP004008]
243091
243173
+
Leu
TAG
[Ensembl]
¡û
>W1610627743
LIDX01000012
Bacillota
Geobacillus sp. PA-3 [LIDX]
83
165
+
Leu
TAG
[ENA]
¡û
>W1610627746
LIDX01000013
Bacillota
Geobacillus sp. PA-3 [LIDX]
309
391
+
Leu
TAG
[ENA]
¡û
>W1610627750
LIDX01000014
Bacillota
Geobacillus sp. PA-3 [LIDX]
83
165
+
Leu
TAG
[ENA]
¡û
>W1610627801
LIDX01000128
Bacillota
Geobacillus sp. PA-3 [LIDX]
837
919
+
Leu
TAG
[ENA]
¡û
>W1610641214
LJAJ01000120
Bacillota
Geobacillus sp. BCO2 [LJAJ]
738
656
-
Leu
TAG
[ENA]
¡û
>W1610841620
LPUG01000012
Bacillota
Anoxybacillus sp. P3H1B [LPUG]
813
897
+
Leu
TAG
[ENA]
¡û
>W1610841660
LPUG01000017
Bacillota
Anoxybacillus sp. P3H1B [LPUG]
104103
104187
+
Leu
TAG
[ENA]
¡û
>W1610854305
LQIE01000020
Bacillota
Geobacillus stearothermophilus [LQIE]
880
798
-
Leu
TAG
[ENA]
¡û
>W1610868937
LQYS01000123
Bacillota
Parageobacillus caldoxylosilyticus [LQYS]
128594
128511
-
Leu
TAG
[ENA]
¡û
>W1610868973
LQYS01000132
Bacillota
Parageobacillus caldoxylosilyticus [LQYS]
51280
51364
+
Leu
TAG
[ENA]
¡û
>W1610869169
LQYV01000127
Bacillota
Geobacillus stearothermophilus [LQYV]
44278
44360
+
Leu
TAG
[ENA]
¡û
>W1610955242
LVHZ01000245
Bacillota
Geobacillus stearothermophilus 15 [LVHZ]
469
551
+
Leu
TAG
[ENA]
¡û
>W1610986823
LWHE01000050
Bacillota
Geobacillus subterraneus [LWHE]
924
842
-
Leu
TAG
[ENA]
¡û
>W1710064467
BCQG01000014
Bacillota
Geobacillus jurassicus NBRC 107829 [BCQG]
751
670
-
Leu
TAG
[ENA]
¡û
>W1710758870
LIDX01000012
Bacillota
Geobacillus sp. PA-3 [LIDX]
83
165
+
Leu
TAG
[ENA]
¡û
>W1710758873
LIDX01000013
Bacillota
Geobacillus sp. PA-3 [LIDX]
309
391
+
Leu
TAG
[ENA]
¡û
>W1710758877
LIDX01000014
Bacillota
Geobacillus sp. PA-3 [LIDX]
83
165
+
Leu
TAG
[ENA]
¡û
>W1710758928
LIDX01000128
Bacillota
Geobacillus sp. PA-3 [LIDX]
837
919
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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