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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106848 (107 seq.)
>W1710889383
LNAM01000210
Bacillota
Acetivibrio ethanolgignens [LNAM]
391
474
+
Tyr
GTA
[ENA]
¡û
>W1711579199
MNRK01000149
Bacillota
Clostridiales bacterium Nov_37_41 [MNRK]
297
379
+
Tyr
GTA
[ENA]
¡û
>W1712040998
NFKT01000018
Bacillota
Lachnoclostridium sp. An169 [NFKT]
389
472
+
Tyr
GTA
[ENA]
¡û
>WENV180134156
OATJ01052596
[OATJ] human gut metagenome; faeces
249
166
-
Tyr
GTA
[ENA]
¡û
>WENV180187164
OAWV01027261
[OAWV] human gut metagenome; faeces
319
402
+
Tyr
GTA
[ENA]
¡û
>WENV180280135
OBHX01247653
[OBHX] metagenome; feces
163
80
-
Tyr
GTA
[ENA]
¡û
>WENV180315115
OBKH01021668
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
340
423
+
Tyr
GTA
[ENA]
¡û
>WENV180349304
OBLO01033150
[OBLO] metagenome; feces
878
795
-
Tyr
GTA
[ENA]
¡û
>WENV180401233
OBRJ01016608
[OBRJ] human gut metagenome; ENVO:feces
273
355
+
Tyr
GTA
[ENA]
¡û
>WENV180577602
OCMA01118194
[OCMA] human gut metagenome; human gut
85
4
-
Tyr
GTA
[ENA]
¡û
>WENV180600817
OCPQ01001448
[OCPQ] human gut metagenome; faeces
6238
6157
-
Tyr
GTA
[ENA]
¡û
>WENV180612481
OCPX01001670
[OCPX] human gut metagenome; human gut
9841
9760
-
Tyr
GTA
[ENA]
¡û
>WENV180625799
OCQL01049183
[OCQL] human gut metagenome; human gut
321
239
-
Tyr
GTA
[ENA]
¡û
>WENV180626224
OCQL01259448
[OCQL] human gut metagenome; human gut
149
67
-
Tyr
GTA
[ENA]
¡û
>WENV180626891
OCQM01070393
[OCQM] human gut metagenome; human gut
144
226
+
Tyr
GTA
[ENA]
¡û
>WENV180626984
OCQM01081583
[OCQM] human gut metagenome; human gut
260
342
+
Tyr
GTA
[ENA]
¡û
>WENV180627675
OCQM01278225
[OCQM] human gut metagenome; human gut
154
72
-
Tyr
GTA
[ENA]
¡û
>WENV180678087
OCVV011868686
[OCVV] gut metagenome; gut
61
143
+
Tyr
GTA
[ENA]
¡û
>WENV180678089
OCVV011868686
[OCVV] gut metagenome; gut
61
143
+
Tyr
GTA
[ENA]
¡û
>WENV180683344
OCVV012838783
[OCVV] gut metagenome; gut
307
389
+
Tyr
GTA
[ENA]
¡û
>WENV180683350
OCVV012838783
[OCVV] gut metagenome; gut
307
389
+
Tyr
GTA
[ENA]
¡û
>WENV180731061
ODGV01064079
[ODGV] human metagenome; G_DNA_Stool
236
154
-
Tyr
GTA
[ENA]
¡û
>WENV180743300
ODHH01224643
[ODHH] human metagenome; G_DNA_Stool
37
121
+
Tyr
GTA
[ENA]
¡û
>WENV180826697
ODJZ01016947
[ODJZ] human metagenome; G_DNA_Stool
306
390
+
Tyr
GTA
[ENA]
¡û
>WENV180828234
ODKA01004632
[ODKA] human metagenome; G_DNA_Stool
3738
3819
+
Tyr
GTA
[ENA]
¡û
>WENV180838703
ODKG01194950
[ODKG] human metagenome; G_DNA_Stool
88
171
+
Tyr
GTA
[ENA]
¡û
>WENV180908321
ODQJ01002590
[ODQJ] human metagenome; G_DNA_Stool
3770
3851
+
Tyr
GTA
[ENA]
¡û
>WENV181957682
OGZL01012857
[OGZL] human gut metagenome; faeces
163
80
-
Tyr
GTA
[ENA]
¡û
>WENV181958533
OGZM01000100
[OGZM] human gut metagenome; faeces
2407
2490
+
Tyr
GTA
[ENA]
¡û
>WENV181982193
OHAG01034392
[OHAG] human gut metagenome; faeces
334
417
+
Tyr
GTA
[ENA]
¡û
>WENV182175908
OHNH01004726
[OHNH] human gut metagenome; feces
2944
3026
+
Tyr
GTA
[ENA]
¡û
>WENV182370699
OICT01002665
[OICT] human gut metagenome; feces
5889
5806
-
Tyr
GTA
[ENA]
¡û
>C08003681
CP000885
Bacillota
Lachnoclostridium phytofermentans ISDg [CP000885]
187268
187350
+
Tyr
GTA
[Ensembl]
¡û
>WENV182602128
OJJJ01015637
[OJJJ] metagenome; faeces
16
99
+
Tyr
GTA
[ENA]
¡û
>WENV182613503
OJKA01000866
[OJKA] metagenome; faeces
6961
6880
-
Tyr
GTA
[ENA]
¡û
>WENV182693756
OJOH01004732
[OJOH] human gut metagenome; stool sample
163
80
-
Tyr
GTA
[ENA]
¡û
>WENV182927430
OKUM01034374
[OKUM] human gut metagenome; feces
156
73
-
Tyr
GTA
[ENA]
¡û
>WENV183104283
OLNK01000185
[OLNK] human gut metagenome; faeces
315
398
+
Tyr
GTA
[ENA]
¡û
>WENV183167254
OLOZ01000052
[OLOZ] human gut metagenome; faeces
123428
123345
-
Tyr
GTA
[ENA]
¡û
>WENV183235452
OLQW01033197
[OLQW] human gut metagenome; faeces
752
669
-
Tyr
GTA
[ENA]
¡û
>WENV183242050
OLRB01002978
[OLRB] human gut metagenome; faeces
4816
4733
-
Tyr
GTA
[ENA]
¡û
>WENV183292978
OLSJ01034026
[OLSJ] human gut metagenome; faeces
663
746
+
Tyr
GTA
[ENA]
¡û
>WENV183317540
OLVT01006988
[OLVT] human gut metagenome; faeces
4403
4486
+
Tyr
GTA
[ENA]
¡û
>WENV183329446
OLWB01000338
[OLWB] human gut metagenome; faeces
49603
49520
-
Tyr
GTA
[ENA]
¡û
>WENV170660438
JXWT01101295
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
340
423
+
Tyr
GTA
[ENA]
¡û
>WENV170690634
LFRM01353287
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
903
985
+
Tyr
GTA
[ENA]
¡û
>W1911491568
OAOG01000045
Bacillota
Anaerocolumna aminovalerica [OAOG]
3345
3427
+
Tyr
GTA
[ENA]
¡û
>W1911491592
OAOG01000094
Bacillota
Anaerocolumna aminovalerica [OAOG]
575
492
-
Tyr
GTA
[ENA]
¡û
>W2010275682
CABKWG020000004
Bacillota
Clostridiaceae bacterium [CABKWG]
338219
338138
-
Tyr
GTA
[ENA]
¡û
>W2010275693
CABKWG020000005
Bacillota
Clostridiaceae bacterium [CABKWG]
461113
461195
+
Tyr
GTA
[ENA]
¡û
>W2010286889
CABMMD010000210
Bacillota
Acetivibrio ethanolgignens [CABMMD]
391
474
+
Tyr
GTA
[ENA]
¡û
>W2010337007
CACZEQ010000151
Bacillota
Ruminococcaceae bacterium [CACZEQ]
4128
4047
-
Tyr
GTA
[ENA]
¡û
>W2010338106
CACZML010000174
Bacillota
Ruminococcaceae bacterium [CACZML]
1982
1901
-
Tyr
GTA
[ENA]
¡û
>W2010338112
CACZML010000178
Bacillota
Ruminococcaceae bacterium [CACZML]
701
783
+
Tyr
GTA
[ENA]
¡û
>W2010475335
JAAILS010000015
Bacillota
Blautia wexlerae MSK.18.16 [JAAILS]
75886
75804
-
Tyr
GTA
[ENA]
¡û
>W2010475353
JAAILS010000045
Bacillota
Blautia wexlerae MSK.18.16 [JAAILS]
12137
12218
+
Tyr
GTA
[ENA]
¡û
>W2010477078
JAAIMY010000017
Bacillota
Blautia wexlerae MSK.20.46 [JAAIMY]
59
141
+
Tyr
GTA
[ENA]
¡û
>W2010477086
JAAIMY010000020
Bacillota
Blautia wexlerae MSK.20.46 [JAAIMY]
11772
11853
+
Tyr
GTA
[ENA]
¡û
>W2010477392
JAAINE010000010
Bacillota
Blautia wexlerae MSK.19.90 [JAAINE]
4410
4491
+
Tyr
GTA
[ENA]
¡û
>W2010477411
JAAINE010000075
Bacillota
Blautia wexlerae MSK.19.90 [JAAINE]
18488
18406
-
Tyr
GTA
[ENA]
¡û
>W2010479552
JAAIOR010000066
Bacillota
Blautia wexlerae MSK.23.78 [JAAIOR]
3764
3845
+
Tyr
GTA
[ENA]
¡û
>W2010479554
JAAIOR010000075
Bacillota
Blautia wexlerae MSK.23.78 [JAAIOR]
59
141
+
Tyr
GTA
[ENA]
¡û
>W2010479576
JAAIOS010000004
Bacillota
Blautia wexlerae MSK.23.75 [JAAIOS]
59
141
+
Tyr
GTA
[ENA]
¡û
>W2010479610
JAAIOS010000065
Bacillota
Blautia wexlerae MSK.23.75 [JAAIOS]
3764
3845
+
Tyr
GTA
[ENA]
¡û
>W2010479679
JAAIOU010000003
Bacillota
Blautia wexlerae MSK.22.83 [JAAIOU]
106320
106238
-
Tyr
GTA
[ENA]
¡û
>W2010479710
JAAIOU010000066
Bacillota
Blautia wexlerae MSK.22.83 [JAAIOU]
3764
3845
+
Tyr
GTA
[ENA]
¡û
>W2010480015
JAAIPA010000065
Bacillota
Blautia wexlerae MSK.22.10 [JAAIPA]
3764
3845
+
Tyr
GTA
[ENA]
¡û
>W2010480016
JAAIPA010000077
Bacillota
Blautia wexlerae MSK.22.10 [JAAIPA]
59
141
+
Tyr
GTA
[ENA]
¡û
>W2010480637
JAAIPM010000041
Bacillota
Blautia wexlerae MSK.15.27 [JAAIPM]
59
141
+
Tyr
GTA
[ENA]
¡û
>W2010480644
JAAIPM010000068
Bacillota
Blautia wexlerae MSK.15.27 [JAAIPM]
186
267
+
Tyr
GTA
[ENA]
¡û
>W2010480736
JAAIPO010000033
Bacillota
Blautia wexlerae MSK.14.2 [JAAIPO]
1461
1542
+
Tyr
GTA
[ENA]
¡û
>W2010480752
JAAIPO010000086
Bacillota
Blautia wexlerae MSK.14.2 [JAAIPO]
59
141
+
Tyr
GTA
[ENA]
¡û
>W2010537714
JAAQRO010000004
Bacillota
Anaerosporobacter sp. KCTC 15857 [JAAQRO]
20709
20626
-
Tyr
GTA
[ENA]
¡û
>W2010537775
JAAQRO010000046
Bacillota
Anaerosporobacter sp. KCTC 15857 [JAAQRO]
532
615
+
Tyr
GTA
[ENA]
¡û
>W2010681414
JACEGA010000001
Bacillota
Lachnospiraceae bacterium MD1 [JACEGA]
4100998
4100916
-
Tyr
GTA
[ENA]
¡û
>W2011152519
OAOG01000045
Bacillota
Anaerocolumna aminovalerica [OAOG]
3345
3427
+
Tyr
GTA
[ENA]
¡û
>W2011152543
OAOG01000094
Bacillota
Anaerocolumna aminovalerica [OAOG]
575
492
-
Tyr
GTA
[ENA]
¡û
>W2110102082
CAJFPO010000007
Bacillota
Lachnoclostridium sp. An169 [CAJFPO]
30
113
+
Tyr
GTA
[ENA]
¡û
>W2110246666
JACOQG010000016
Bacillota
Blautia sp. M29 [JACOQG]
384
466
+
Tyr
GTA
[ENA]
¡û
>W2110246683
JACOQG010000019
Bacillota
Blautia sp. M29 [JACOQG]
51682
51601
-
Tyr
GTA
[ENA]
¡û
>W2110341856
JADMTA010000012
Bacillota
Blautia wexlerae 1001136B_160425_F6 [JADMTA]
81
163
+
Tyr
GTA
[ENA]
¡û
>W2110341889
JADMTA010000041
Bacillota
Blautia wexlerae 1001136B_160425_F6 [JADMTA]
29837
29756
-
Tyr
GTA
[ENA]
¡û
>W2110365764
JADPCB010000009
Bacillota
Blautia wexlerae 1001283B150217_161031_C5 [JADPCB]
118665
118583
-
Tyr
GTA
[ENA]
¡û
>W2110367129
JADPEC010000011
Bacillota
Blautia wexlerae 1001302B_160321_A2 [JADPEC]
447
529
+
Tyr
GTA
[ENA]
¡û
>W2110367154
JADPEC010000024
Bacillota
Blautia wexlerae 1001302B_160321_A2 [JADPEC]
62316
62235
-
Tyr
GTA
[ENA]
¡û
>W2110404273
JAEAGR010000025
Bacillota
Mobilitalea sibirica DSM 26468 [JAEAGR]
725
808
+
Tyr
GTA
[ENA]
¡û
>W2110620260
JAHLON010000045
Bacillota
Anaerocolumna aminovalerica N98 [JAHLON]
8433
8515
+
Tyr
GTA
[ENA]
¡û
>W2110620281
JAHLON010000103
Bacillota
Anaerocolumna aminovalerica N98 [JAHLON]
14050
13967
-
Tyr
GTA
[ENA]
¡û
>W2110622498
JAHLQG010000039
Bacillota
Blautia sp. MSJ-9 [JAHLQG]
415
497
+
Tyr
GTA
[ENA]
¡û
>W2110622517
JAHLQG010000053
Bacillota
Blautia sp. MSJ-9 [JAHLQG]
99725
99643
-
Tyr
GTA
[ENA]
¡û
>C211011811
AP023367
Bacillota
Anaerocolumna cellulosilytica SN021 [AP023367]
17415
17498
+
Tyr
GTA
-
¡û
>C211015383
AP024169
Bacillota
Lachnospiraceae bacterium TB5 [AP024169]
16713
16796
+
Tyr
GTA
-
¡û
>C211015391
AP024169
Bacillota
Lachnospiraceae bacterium TB5 [AP024169]
373736
373819
+
Tyr
GTA
-
¡û
>W2110724974
JAJCGT010000014
Bacillota
Blautia sp. MSK18_10 MSK.18.10 [JAJCGT]
59
141
+
Tyr
GTA
[ENA]
¡û
>W2110724994
JAJCGT010000056
Bacillota
Blautia sp. MSK18_10 MSK.18.10 [JAJCGT]
11333
11252
-
Tyr
GTA
[ENA]
¡û
>W2110736331
JAJDML010000061
Bacillota
Blautia sp. DFI.1.216 [JAJDML]
3716
3797
+
Tyr
GTA
[ENA]
¡û
>C241014697
AP028156
Bacillota
Blautia luti JCM 17040 [AP028156]
36064
36146
+
Tyr
GTA
-
¡û
>C241014750
AP028156
Bacillota
Blautia luti JCM 17040 [AP028156]
761518
761436
-
Tyr
GTA
-
¡û
>W1610436742
FJVE01000004
Bacillota
Clostridium sp. Marseille-P299 [FJVE]
338219
338138
-
Tyr
GTA
[ENA]
¡û
>W1610436753
FJVE01000005
Bacillota
Clostridium sp. Marseille-P299 [FJVE]
461113
461195
+
Tyr
GTA
[ENA]
¡û
>W1610749761
LNAM01000210
Bacillota
Acetivibrio ethanolgignens [LNAM]
391
474
+
Tyr
GTA
[ENA]
¡û
>W1710436478
FJVE01000004
Bacillota
Clostridium sp. Marseille-P299 [FJVE]
338219
338138
-
Tyr
GTA
[ENA]
¡û
>W1710436489
FJVE01000005
Bacillota
Clostridium sp. Marseille-P299 [FJVE]
461113
461195
+
Tyr
GTA
[ENA]
¡û
>W1710571699
FOWD01000003
Bacillota
Anaerocolumna aminovalerica [FOWD]
75710
75628
-
Tyr
GTA
[ENA]
¡û
>W1710571713
FOWD01000018
Bacillota
Anaerocolumna aminovalerica [FOWD]
87148
87065
-
Tyr
GTA
[ENA]
¡û
>W1710592606
FRCP01000008
Bacillota
Anaerosporobacter mobilis DSM 15930 [FRCP]
598
517
-
Tyr
GTA
[ENA]
¡û
>W1710593665
FRFD01000021
Bacillota
Anaerocolumna xylanovorans DSM 12503 [FRFD]
660
743
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK