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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106852 (19 seq.)
>W1711229636
LXYP01000045
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
212349
212433
+
Leu
TAG
[ENA]
¡û
>WENV182557738
OJDK01005329
[OJDK] seawater metagenome; Sea water
232
148
-
Leu
TAG
[ENA]
¡û
>WENV170668393
LADL02003469
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
399
483
+
Leu
TAG
[ENA]
¡û
>C181062170
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
931888
931804
-
Leu
TAG
-
¡û
>C181068273
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
3274153
3274069
-
Leu
TAG
-
¡û
>C181220379
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
643796
643712
-
Leu
TAG
-
¡û
>W1911532532
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
972860
972776
-
Leu
TAG
[ENA]
¡û
>W2010308761
CABWKY010000001
Alphaproteobacteria
Sphingorhabdus sp. 109 [CABWKY]
859119
859203
+
Leu
TAG
[ENA]
¡û
>W2011165291
OGVD01000004
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
972860
972776
-
Leu
TAG
[ENA]
¡û
>W2011231704
PYIA01000137
Alphaproteobacteria
Sphingopyxis sp. BSNA05 [PYIA]
10609
10525
-
Leu
TAG
[ENA]
¡û
>W2011858058
UNRC01000004
Alphaproteobacteria
Sphingorhabdus sp. Alg239-R122 [UNRC]
163935
163851
-
Leu
TAG
[ENA]
¡û
>C211295945
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
360329
360245
-
Leu
TAG
-
¡û
>C231132183
CP073747
Alphaproteobacteria
Kordiimonas sp. SCSIO 12610 [CP073747]
2072089
2072005
-
Leu
TAG
-
¡û
>C231232402
CP086727
Alphaproteobacteria
Parasphingorhabdus litoris DSM 22379 [CP086727]
1798859
1798943
+
Leu
TAG
-
¡û
>C241105713
CP046120
Alphaproteobacteria
Novosphingobium sp. Gsoil 351 [CP046120]
2518315
2518231
-
Leu
TAG
-
¡û
>C241149628
CP051217
Alphaproteobacteria
Parasphingorhabdus halotolerans JK6 [CP051217]
580067
579983
-
Leu
TAG
-
¡û
>C161073958
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
1530661
1530745
+
Leu
TAG
[Ensembl]
¡û
>W1611013506
LXYP01000045
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
212349
212433
+
Leu
TAG
[ENA]
¡û
>W1710593909
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
476131
476215
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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