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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.106941 (99 seq.)
>W1710865254
LMGN01000011
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
259260
259176
-
Leu
TAG
[ENA]
¡û
>W1710869969
LMKD01000001
Alphaproteobacteria
Rhizobium sp. Leaf202 [LMKD]
273400
273316
-
Leu
TAG
[ENA]
¡û
>W1710871977
LMLQ01000001
Alphaproteobacteria
Rhizobium sp. Leaf68 [LMLQ]
309732
309648
-
Leu
TAG
[ENA]
¡û
>W1710873032
LMMM01000003
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
143535
143619
+
Leu
TAG
[ENA]
¡û
>W1710874923
LMNZ01000020
Alphaproteobacteria
Rhizobium sp. Leaf311 [LMNZ]
432103
432019
-
Leu
TAG
[ENA]
¡û
>W1710875876
LMOT01000005
Alphaproteobacteria
Rhizobium sp. Leaf155 [LMOT]
85539
85455
-
Leu
TAG
[ENA]
¡û
>W1710916248
LNUW01000015
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
120819
120903
+
Leu
TAG
[ENA]
¡û
>W1711214000
LXKU01000001
Alphaproteobacteria
Agrobacterium rubi [LXKU]
825536
825620
+
Leu
TAG
[ENA]
¡û
>W141237968
BBJU01000014
Alphaproteobacteria
Agrobacterium rubi NBRC 13261 [BBJU]
68129
68213
+
Leu
TAG
[ENA]
¡û
>W141276509
JADW01000001
Alphaproteobacteria
Agrobacterium larrymoorei ATCC 51759 [JADW]
156902
156986
+
Leu
TAG
[ENA]
¡û
>WENV183735827
PJUB01004005
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
401
485
+
Leu
TAG
[ENA]
¡û
>C191170923
CP039691
Alphaproteobacteria
Agrobacterium larrymoorei CFBP5473 [CP039691, CP039692]
1811268
1811184
-
Leu
TAG
-
¡û
>W1910226208
FMUD01000001
Alphaproteobacteria
Agrobacterium sp. DSM 25558 [FMUD]
72211
72295
+
Leu
TAG
[ENA]
¡û
>W1910226292
FMUE01000007
Alphaproteobacteria
Agrobacterium sp. DSM 25559 [FMUE]
229265
229349
+
Leu
TAG
[ENA]
¡û
>W1911422605
NXEJ01000007
Alphaproteobacteria
Agrobacterium rosae NCPPB 1650 [NXEJ]
227313
227397
+
Leu
TAG
[ENA]
¡û
>W1810084188
PEQT01000001
Alphaproteobacteria
Agrobacterium rosae B20.3 [PEQT]
237391
237475
+
Leu
TAG
[ENA]
¡û
>W1810089074
PGEL01000027
Alphaproteobacteria
Agrobacterium bohemicum R90 [PGEL]
120819
120903
+
Leu
TAG
[ENA]
¡û
>W1810537738
QDFK01000005
Alphaproteobacteria
Sphingomonas sp. TPD3009 [QDFK]
60247
60331
+
Leu
TAG
[ENA]
¡û
>W1810537784
QDFL01000005
Alphaproteobacteria
Agrobacterium tumefaciens TPD7005 [QDFL]
60247
60331
+
Leu
TAG
[ENA]
¡û
>W1810538235
QDFR01000001
Alphaproteobacteria
Rhizobium rhizogenes TPD7009 [QDFR]
1648
1732
+
Leu
TAG
[ENA]
¡û
>SRA1014960
SRR023845.398795
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
157
73
-
Leu
TAG
[SRA]
>SRA1015207
SRR023845.499267
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
157
73
-
Leu
TAG
[SRA]
>SRA1015322
SRR023846.16625
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
54
138
+
Leu
TAG
[SRA]
>W2010380836
FMUD01000001
Alphaproteobacteria
Agrobacterium sp. DSM 25558 [FMUD]
72211
72295
+
Leu
TAG
[ENA]
¡û
>W2010380920
FMUE01000007
Alphaproteobacteria
Agrobacterium sp. DSM 25559 [FMUE]
229265
229349
+
Leu
TAG
[ENA]
¡û
>W2010508895
JAAMCM010000007
Alphaproteobacteria
Rhizobium skierniewicense Di1472 [JAAMCM]
167086
167170
+
Leu
TAG
[ENA]
¡û
>W2010508950
JAAMCN010000007
Alphaproteobacteria
Agrobacterium rubi Eu3-2RS [JAAMCN]
69909
69825
-
Leu
TAG
[ENA]
¡û
>W2010509034
JAAMCO010000003
Alphaproteobacteria
Agrobacterium rubi Eu2-1RS [JAAMCO]
177845
177929
+
Leu
TAG
[ENA]
¡û
>W2010509093
JAAMCP010000005
Alphaproteobacteria
Agrobacterium rubi A19/93 [JAAMCP]
69909
69825
-
Leu
TAG
[ENA]
¡û
>W2010512133
JAAMFB010000015
Alphaproteobacteria
Agrobacterium larrymoorei FPH-AR2 [JAAMFB]
3879
3963
+
Leu
TAG
[ENA]
¡û
>W2010512224
JAAMFC010000007
Alphaproteobacteria
Agrobacterium rubi AS2A7 [JAAMFC]
176615
176699
+
Leu
TAG
[ENA]
¡û
>W2010525119
JAANSA010000007
Alphaproteobacteria
Agrobacterium rubi Eu3-2NK [JAANSA]
69909
69825
-
Leu
TAG
[ENA]
¡û
>W2010525169
JAANSB010000003
Alphaproteobacteria
Agrobacterium rubi Eu2-1NK [JAANSB]
74056
73972
-
Leu
TAG
[ENA]
¡û
>W2010725060
JACIDV010000008
Alphaproteobacteria
Rhizobium skierniewicense DSM 26438 [JACIDV]
1321
1405
+
Leu
TAG
[ENA]
¡û
>W2011142963
NXEJ01000007
Alphaproteobacteria
Agrobacterium rosae NCPPB 1650 [NXEJ]
227313
227397
+
Leu
TAG
[ENA]
¡û
>W2011291839
QSNQ01000002
Alphaproteobacteria
Agrobacterium tumefaciens ICMP 17598 [QSNQ]
602277
602361
+
Leu
TAG
[ENA]
¡û
>W2011292348
QSWI01000009
Alphaproteobacteria
Agrobacterium rosae SBV_31 [QSWI]
260435
260519
+
Leu
TAG
[ENA]
¡û
>W2011292393
QSWJ01000008
Alphaproteobacteria
Agrobacterium rosae SBV_32 [QSWJ]
79642
79558
-
Leu
TAG
[ENA]
¡û
>W2011303098
QTSV01000009
Alphaproteobacteria
Agrobacterium rosae SBV33 [QTSV]
79642
79558
-
Leu
TAG
[ENA]
¡û
>W2011600547
SISF01000018
Alphaproteobacteria
Agrobacterium sp. RZME10 [SISF]
10777
10693
-
Leu
TAG
[ENA]
¡û
>W2011706186
SWKE01000015
Alphaproteobacteria
Agrobacterium larrymoorei CFBP5477 [SWKE]
411403
411319
-
Leu
TAG
[ENA]
¡û
>W2011767943
UBKW01000007
Alphaproteobacteria
Rhizobiales bacterium [UBKW]
601754
601838
+
Leu
TAG
[ENA]
¡û
>W2011769350
UBME01000006
Alphaproteobacteria
Rhizobiales bacterium [UBME]
119232
119316
+
Leu
TAG
[ENA]
¡û
>W2011770474
UBNF01000007
Alphaproteobacteria
Rhizobiales bacterium [UBNF]
561380
561464
+
Leu
TAG
[ENA]
¡û
>W2011770785
UBNM01000009
Alphaproteobacteria
Rhizobiales bacterium [UBNM]
379726
379642
-
Leu
TAG
[ENA]
¡û
>W2011775518
UBRU01000001
Alphaproteobacteria
Rhizobiales bacterium [UBRU]
1077446
1077530
+
Leu
TAG
[ENA]
¡û
>W2011775988
UBSF01000003
Alphaproteobacteria
Rhizobiales bacterium [UBSF]
404852
404768
-
Leu
TAG
[ENA]
¡û
>W2011776145
UBSI01000013
Alphaproteobacteria
Rhizobiales bacterium [UBSI]
244596
244680
+
Leu
TAG
[ENA]
¡û
>W2011776937
UBTC01000001
Alphaproteobacteria
Rhizobiales bacterium [UBTC]
563187
563271
+
Leu
TAG
[ENA]
¡û
>W2011777068
UBTF01000001
Alphaproteobacteria
Rhizobiales bacterium [UBTF]
382117
382033
-
Leu
TAG
[ENA]
¡û
>W2011777351
UBTL01000009
Alphaproteobacteria
Rhizobiales bacterium [UBTL]
402265
402181
-
Leu
TAG
[ENA]
¡û
>W2011779062
UBUY01000001
Alphaproteobacteria
Rhizobiales bacterium [UBUY]
558509
558593
+
Leu
TAG
[ENA]
¡û
>W2011783636
UBYZ01000014
Alphaproteobacteria
Rhizobiales bacterium [UBYZ]
118254
118338
+
Leu
TAG
[ENA]
¡û
>W2011783893
UBZF01000015
Alphaproteobacteria
Rhizobiales bacterium [UBZF]
307529
307445
-
Leu
TAG
[ENA]
¡û
>W2011785493
UCAR01000015
Alphaproteobacteria
Rhizobiales bacterium [UCAR]
10942
10858
-
Leu
TAG
[ENA]
¡û
>W2011786754
UCBU01000005
Alphaproteobacteria
Rhizobiales bacterium [UCBU]
580468
580552
+
Leu
TAG
[ENA]
¡û
>W2011786928
UCBY01000001
Alphaproteobacteria
Rhizobiales bacterium [UCBY]
439316
439232
-
Leu
TAG
[ENA]
¡û
>W2011787081
UCCB01000008
Alphaproteobacteria
Rhizobiales bacterium [UCCB]
465212
465128
-
Leu
TAG
[ENA]
¡û
>W2011787150
UCCD01000001
Alphaproteobacteria
Rhizobiales bacterium [UCCD]
273486
273402
-
Leu
TAG
[ENA]
¡û
>W2011787779
UCCR01000015
Alphaproteobacteria
Rhizobiales bacterium [UCCR]
119218
119302
+
Leu
TAG
[ENA]
¡û
>W2011789796
UCEK01000005
Alphaproteobacteria
Rhizobiales bacterium [UCEK]
563542
563626
+
Leu
TAG
[ENA]
¡û
>W2011790911
UCFI01000015
Alphaproteobacteria
Rhizobiales bacterium [UCFI]
119387
119471
+
Leu
TAG
[ENA]
¡û
>W2011791310
UCFR01000018
Alphaproteobacteria
Rhizobiales bacterium [UCFR]
219619
219535
-
Leu
TAG
[ENA]
¡û
>W2011791525
UCFW01000007
Alphaproteobacteria
Rhizobiales bacterium [UCFW]
379726
379642
-
Leu
TAG
[ENA]
¡û
>W2011792105
UCGJ01000015
Alphaproteobacteria
Rhizobiales bacterium [UCGJ]
118257
118341
+
Leu
TAG
[ENA]
¡û
>W2011792126
UCGK01000001
Alphaproteobacteria
Rhizobiales bacterium [UCGK]
119442
119526
+
Leu
TAG
[ENA]
¡û
>W2011792760
UCGY01000002
Alphaproteobacteria
Rhizobiales bacterium [UCGY]
23848
23764
-
Leu
TAG
[ENA]
¡û
>W2011794799
UCIS01000006
Alphaproteobacteria
Rhizobiales bacterium [UCIS]
119424
119508
+
Leu
TAG
[ENA]
¡û
>W2011795259
UCJC01000109
Alphaproteobacteria
Rhizobiales bacterium [UCJC]
12318
12402
+
Leu
TAG
[ENA]
¡û
>W2011796023
UCJU01000003
Alphaproteobacteria
Rhizobiales bacterium [UCJU]
90310
90394
+
Leu
TAG
[ENA]
¡û
>W2011796740
UCKK01000007
Alphaproteobacteria
Rhizobiales bacterium [UCKK]
119129
119213
+
Leu
TAG
[ENA]
¡û
>W2011797493
UCLA01000001
Alphaproteobacteria
Rhizobiales bacterium [UCLA]
563528
563612
+
Leu
TAG
[ENA]
¡û
>W2011797554
UCLB01000020
Alphaproteobacteria
Rhizobiales bacterium [UCLB]
307414
307330
-
Leu
TAG
[ENA]
¡û
>W2011800396
UCNO01000001
Alphaproteobacteria
Rhizobiales bacterium [UCNO]
563792
563876
+
Leu
TAG
[ENA]
¡û
>W2011802577
UEHP01000003
Alphaproteobacteria
Rhizobiales bacterium [UEHP]
278779
278695
-
Leu
TAG
[ENA]
¡û
>W2011802972
UEHY01000015
Alphaproteobacteria
Rhizobiales bacterium [UEHY]
20176
20092
-
Leu
TAG
[ENA]
¡û
>W2011803229
UEIE01000008
Alphaproteobacteria
Rhizobiales bacterium [UEIE]
22533
22617
+
Leu
TAG
[ENA]
¡û
>W2011847751
UICG01000007
Alphaproteobacteria
Rhizobiales bacterium [UICG]
384404
384320
-
Leu
TAG
[ENA]
¡û
>W2011847970
UICL01000005
Alphaproteobacteria
Rhizobiales bacterium [UICL]
404852
404768
-
Leu
TAG
[ENA]
¡û
>W2012002234
VEHG01000002
Alphaproteobacteria
Agrobacterium fabrum str. C58 DE0068 [VEHG]
408152
408068
-
Leu
TAG
[ENA]
¡û
>W2012002278
VEHH01000002
Alphaproteobacteria
Agrobacterium fabrum str. C58 DE0067 [VEHH]
499140
499224
+
Leu
TAG
[ENA]
¡û
>W2110267199
JACVAB010000001
Alphaproteobacteria
Agrobacterium sp. AGB01 [JACVAB]
1381667
1381751
+
Leu
TAG
[ENA]
¡û
>W2110291528
JACYVD010000007
Alphaproteobacteria
Rhizobium sp. CFBP 13717 CFBP13717 [JACYVD]
71860
71776
-
Leu
TAG
[ENA]
¡û
>W2110291577
JACYVF010000009
Alphaproteobacteria
Rhizobium sp. CFBP 13644 CFBP13644 [JACYVF]
139571
139655
+
Leu
TAG
[ENA]
¡û
>W2110507163
JAFJZW010000002
Alphaproteobacteria
Agrobacterium rosae A.E1 [JAFJZW]
536072
536156
+
Leu
TAG
[ENA]
¡û
>W2110537952
JAGGJS010000002
Alphaproteobacteria
Agrobacterium rubi DSM 6772 [JAGGJS]
199230
199314
+
Leu
TAG
[ENA]
¡û
>C211078399
CP049206
Alphaproteobacteria
Agrobacterium rubi W2/73 [CP049206, CP049207]
218928
218844
-
Leu
TAG
-
¡û
>C211302858
CP072167
Alphaproteobacteria
Agrobacterium larrymoorei AF3.44 [CP072167, CP072168]
2314574
2314658
+
Leu
TAG
-
¡û
>C231069475
CP054146
Alphaproteobacteria
Agrobacterium vaccinii B19.1.4 [CP054146, CP054147]
1504495
1504411
-
Leu
TAG
-
¡û
>C231069529
CP054150
Alphaproteobacteria
Agrobacterium vaccinii B7.6 [CP054150, CP054151]
1587586
1587502
-
Leu
TAG
-
¡û
>W1511509194
JXQV01000030
Alphaproteobacteria
Agrobacterium tumefaciens MEJ076 [JXQV]
414009
413925
-
Leu
TAG
[ENA]
¡û
>W1610727600
LMGN01000011
Alphaproteobacteria
Rhizobium sp. Root564 [LMGN]
259260
259176
-
Leu
TAG
[ENA]
¡û
>W1610732315
LMKD01000001
Alphaproteobacteria
Rhizobium sp. Leaf202 [LMKD]
273400
273316
-
Leu
TAG
[ENA]
¡û
>W1610734323
LMLQ01000001
Alphaproteobacteria
Rhizobium sp. Leaf68 [LMLQ]
309732
309648
-
Leu
TAG
[ENA]
¡û
>W1610735378
LMMM01000003
Alphaproteobacteria
Rhizobium sp. Leaf262 [LMMM]
143535
143619
+
Leu
TAG
[ENA]
¡û
>W1610737269
LMNZ01000020
Alphaproteobacteria
Rhizobium sp. Leaf311 [LMNZ]
432103
432019
-
Leu
TAG
[ENA]
¡û
>W1610738222
LMOT01000005
Alphaproteobacteria
Rhizobium sp. Leaf155 [LMOT]
85539
85455
-
Leu
TAG
[ENA]
¡û
>W1610774487
LNUW01000015
Alphaproteobacteria
Agrobacterium bohemicum R89-1 [LNUW]
120819
120903
+
Leu
TAG
[ENA]
¡û
>W1611001004
LXKU01000001
Alphaproteobacteria
Agrobacterium rubi [LXKU]
825536
825620
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK