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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10708 (19 seq.)
>W1711434423
MIMZ01000015
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
352563
352654
+
Ser
GGA
[ENA]
¡û
>C171101816
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
527724
527633
-
Ser
GGA
-
¡û
>WENV180149165
OAUK01023953
[OAUK] human gut metagenome; faeces
221
312
+
Ser
GGA
[ENA]
¢þ
>WENV180176583
OAWD01000290
[OAWD] human gut metagenome; faeces
24714
24623
-
Ser
GGA
[ENA]
¢þ
>WENV180498485
OCAG01000264
[OCAG] human gut metagenome; faeces
28369
28460
+
Ser
GGA
[ENA]
¢þ
>WENV180504593
OCAN01010549
[OCAN] human gut metagenome; faeces
610
519
-
Ser
GGA
[ENA]
¢þ
>WENV181346103
OFML01004298
[OFML] human gut metagenome; human gut
1387
1296
-
Ser
GGA
[ENA]
¢þ
>WENV182403215
OIET01001430
[OIET] human gut metagenome; human gut
856
765
-
Ser
GGA
[ENA]
¢þ
>WENV182405081
OIEV01000685
[OIEV] human gut metagenome; human gut
20465
20556
+
Ser
GGA
[ENA]
¢þ
>C191064437
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
2610421
2610330
-
Ser
GGA
-
¡û
>C191219516
LR215983
Bacillota
Eubacterium limosum [LR215983]
4307133
4307224
+
Ser
GGA
-
¡û
>W1810609756
QGUD01000005
Bacillota
Eubacterium limosum 8486cho [QGUD]
24998
24907
-
Ser
GGA
[ENA]
¡û
>W1810871724
QUDF01000006
Bacillota
Eubacterium sp. AM05-23 [QUDF]
32402
32311
-
Ser
GGA
[ENA]
¡û
>C11108824
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
4103793
4103702
-
Ser
GGA
[Ensembl]
¡û
>W1511480170
JWIS01000011
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
24752
24661
-
Ser
GGA
[ENA]
¡û
>C161037789
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3989153
3989062
-
Ser
GGA
[Ensembl]
¡û
>W1710525024
FNJF01000002
Bacillota
Eubacterium maltosivorans limosum [FNJF]
342427
342518
+
Ser
GGA
[ENA]
¡û
>W1710571960
FOWI01000003
Bacillota
Eubacterium callanderi [FOWI]
25012
24921
-
Ser
GGA
[ENA]
¡û
>W1710591313
FRBP01000015
Bacillota
Eubacterium callanderi [FRBP]
104759
104850
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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