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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107115 (11 seq.)
>w027464
ABCE01000084
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
5841
5925
+
Leu
TAG
[ENA]
¡û
>WENV170014909
AZIC01004417
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
1570
1651
+
Leu
TAG
[ENA]
¡û
>WENV170121141
CENL01054024
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
269057
268976
-
Leu
TAG
[ENA]
¡û
>SRA1027127
SRR035086.67770
454 Sequencing (SRP001807)
159
240
+
Leu
TAG
[SRA]
>W2012143773
VTSR01000032
Planctomycetota
Gimesia sp. JC646 [VTSR]
764926
764844
-
Leu
TAG
[ENA]
¡û
>C241044058
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
3117841
3117760
-
Leu
TAG
-
¡û
>C241044474
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
1748730
1748811
+
Leu
TAG
-
¡û
>C241044576
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
3064262
3064181
-
Leu
TAG
-
¡û
>C241069965
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
3086366
3086285
-
Leu
TAG
-
¡û
>C241083553
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
624304
624386
+
Leu
TAG
-
¡û
>C241083623
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
4612809
4612890
+
Leu
TAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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