This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107272 (44 seq.)
>W1710809742
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
695
779
+
Tyr
GTA
[ENA]
¡û
>W1710809748
LKEU01000014
Bacillota
Acetobacterium wieringae [LKEU]
19391
19475
+
Tyr
GTA
[ENA]
¡û
>WENV180346826
OBLN01327826
[OBLN] sediment metagenome; sediment
134
50
-
Tyr
GTA
[ENA]
¡û
>W141150080
AXAC01000022
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
368
452
+
Tyr
GTA
[ENA]
¡û
>W141150092
AXAC01000033
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
56363
56279
-
Tyr
GTA
[ENA]
¡û
>W141150098
AXAC01000033
Bacillota
Acetobacterium dehalogenans DSM 11527 [AXAC]
1046
962
-
Tyr
GTA
[ENA]
¡û
>WENV170692348
LGOV01004008
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
19219
19303
+
Tyr
GTA
[ENA]
¡û
>WENV170692610
LGOV01016271
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
86
2
-
Tyr
GTA
[ENA]
¡û
>WENV170695854
LGVE01183031
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
182
266
+
Tyr
GTA
[ENA]
¡û
>WENV170695976
LGVE01193373
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1666
1582
-
Tyr
GTA
[ENA]
¡û
>W2011502491
RXYA01000008
Bacillota
Acetobacterium paludosum DSM 8237 [RXYA]
177652
177568
-
Tyr
GTA
[ENA]
¡û
>W2011502514
RXYA01000020
Bacillota
Acetobacterium paludosum DSM 8237 [RXYA]
570
486
-
Tyr
GTA
[ENA]
¡û
>W2011502559
RXYB01000033
Bacillota
Acetobacterium tundrae DSM 917 [RXYB]
660
576
-
Tyr
GTA
[ENA]
¡û
>W2011502568
RXYB01000055
Bacillota
Acetobacterium tundrae DSM 917 [RXYB]
300
216
-
Tyr
GTA
[ENA]
¡û
>W2011502591
RXYC01000006
Bacillota
Acetobacterium bakii DSM 8239 [RXYC]
258760
258676
-
Tyr
GTA
[ENA]
¡û
>W2011502615
RXYC01000042
Bacillota
Acetobacterium bakii DSM 8239 [RXYC]
192
108
-
Tyr
GTA
[ENA]
¡û
>W2011847158
UHJK01000001
Bacillota
Acetobacterium bakii [UHJK]
2725084
2725168
+
Tyr
GTA
[ENA]
¡û
>W2011847164
UHJK01000001
Bacillota
Acetobacterium bakii [UHJK]
2743765
2743849
+
Tyr
GTA
[ENA]
¡û
>W2011847199
UHJK01000001
Bacillota
Acetobacterium bakii [UHJK]
347477
347393
-
Tyr
GTA
[ENA]
¡û
>W2011861247
UOGO01000001
Bacillota
Acetobacterium bakii [UOGO]
2725084
2725168
+
Tyr
GTA
[ENA]
¡û
>W2011861253
UOGO01000001
Bacillota
Acetobacterium bakii [UOGO]
2743765
2743849
+
Tyr
GTA
[ENA]
¡û
>W2011861288
UOGO01000001
Bacillota
Acetobacterium bakii [UOGO]
347477
347393
-
Tyr
GTA
[ENA]
¡û
>W2012131267
VSLA01000011
Bacillota
Acetobacterium wieringae JM [VSLA]
36366
36282
-
Tyr
GTA
[ENA]
¡û
>W2012131273
VSLA01000013
Bacillota
Acetobacterium wieringae JM [VSLA]
19310
19394
+
Tyr
GTA
[ENA]
¡û
>W2012131287
VSLA01000024
Bacillota
Acetobacterium wieringae JM [VSLA]
257
341
+
Tyr
GTA
[ENA]
¡û
>W2110074903
CABIIK010000034
Bacillota
Acetobacterium wieringae [CABIIK]
17997
18081
+
Tyr
GTA
[ENA]
¡û
>C231248032
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
697330
697414
+
Tyr
GTA
-
¡û
>C231248038
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
715699
715783
+
Tyr
GTA
-
¡û
>C231248056
CP087994
Bacillota
Acetobacterium wieringae Y [CP087994]
1187055
1187139
+
Tyr
GTA
-
¡û
>C231394999
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
635473
635557
+
Tyr
GTA
-
¡û
>C231395005
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
666036
666120
+
Tyr
GTA
-
¡û
>C231395023
CP097897
Bacillota
Acetobacterium wieringae CH1 [CP097897]
1150269
1150353
+
Tyr
GTA
-
¡û
>W2110783192
WJBB01000031
Bacillota
Acetobacterium tundrae DER-2019 [WJBB]
660
576
-
Tyr
GTA
[ENA]
¡û
>W2110783237
WJBC01000036
Bacillota
Acetobacterium fimetarium DER-2019 [WJBC]
345
261
-
Tyr
GTA
[ENA]
¡û
>W2110783242
WJBC01000070
Bacillota
Acetobacterium fimetarium DER-2019 [WJBC]
482
398
-
Tyr
GTA
[ENA]
¡û
>W2110783278
WJBD01000021
Bacillota
Acetobacterium paludosum DER-2019 [WJBD]
56338
56254
-
Tyr
GTA
[ENA]
¡û
>W2110783291
WJBD01000030
Bacillota
Acetobacterium paludosum DER-2019 [WJBD]
570
486
-
Tyr
GTA
[ENA]
¡û
>W2110783333
WJBE01000024
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
51805
51889
+
Tyr
GTA
[ENA]
¡û
>W2110783339
WJBE01000025
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
38911
38827
-
Tyr
GTA
[ENA]
¡û
>W2110783347
WJBE01000040
Bacillota
Acetobacterium malicum DER-2019 [WJBE]
5054
4970
-
Tyr
GTA
[ENA]
¡û
>W2130044993
WJBB01000063
Bacillota
Acetobacterium tundrae DER-2019 [WJBB]
300
216
-
Tyr
GTA
[ENA]
¡û
>C121003912
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3340160
3340076
-
Tyr
GTA
[Ensembl]
¡û
>C121003918
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
3323401
3323317
-
Tyr
GTA
[Ensembl]
¡û
>C121003936
CP002987
Bacillota
Acetobacterium woodii DSM 1030 [CP002987]
2815301
2815217
-
Tyr
GTA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK