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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107419 (31 seq.)
>W1711571256
MNAH01000002
Gammaproteobacteria
Pseudomonas putida [MNAH]
218483
218567
+
Leu
TAA
[ENA]
¡û
>C171077408
CP018319
Gammaproteobacteria
Pseudomonas frederiksbergensis AS1 [CP018319]
5345246
5345330
+
Leu
TAA
-
¡û
>WENV170559823
CXWL01155584
[CXWL] groundwater metagenome; biofilm material
9179
9263
+
Leu
TAA
[ENA]
¡û
>WENV170706693
LNAP01005677
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
9616
9532
-
Leu
TAA
[ENA]
¡û
>C191206237
LR134318
Gammaproteobacteria
Pseudomonas fluorescens NCTC9428 [LR134318]
2785570
2785654
+
Leu
TAA
-
¡û
>W141558144
JHVR01000013
Gammaproteobacteria
Pseudomonas sp. URHB0015 [JHVR]
38458
38374
-
Leu
TAA
[ENA]
¡û
>W1910504556
FYDO01000001
Gammaproteobacteria
Pseudomonas sp. Irchel s3f7 [FYDO]
10003
10087
+
Leu
TAA
[ENA]
¡û
>W1910505185
FYDY01000014
Gammaproteobacteria
Pseudomonas sp. Irchel s3b5 [FYDY]
81837
81753
-
Leu
TAA
[ENA]
¡û
>W1910767690
MOBM01000017
Gammaproteobacteria
Pseudomonas frederiksbergensis 36C6 [MOBM]
39508
39592
+
Leu
TAA
[ENA]
¡û
>W1911568815
PCQM01000031
Gammaproteobacteria
Pseudomonas sp. MYb115 [PCQM]
9101
9017
-
Leu
TAA
[ENA]
¡û
>W1810204564
PODI01000008
Gammaproteobacteria
Pseudomonas sp. FW305-33 FW507-29LB [PODI]
45457
45373
-
Leu
TAA
[ENA]
¡û
>W1810204609
PODJ01000001
Gammaproteobacteria
Pseudomonas sp. FW305-47B [PODJ]
131472
131556
+
Leu
TAA
[ENA]
¡û
>W1810204667
PODK01000008
Gammaproteobacteria
Pseudomonas sp. FW305-60 GW456-A1B [PODK]
35896
35812
-
Leu
TAA
[ENA]
¡û
>W1810204726
PODL01000007
Gammaproteobacteria
Pseudomonas sp. FW305-20 [PODL]
84483
84399
-
Leu
TAA
[ENA]
¡û
>W1810204777
PODM01000002
Gammaproteobacteria
Pseudomonas sp. FW305-122 [PODM]
156987
156903
-
Leu
TAA
[ENA]
¡û
>W2010301292
CABVIO010000002
Gammaproteobacteria
Pseudomonas fluorescens [CABVIO]
608101
608017
-
Leu
TAA
[ENA]
¡û
>W2010424245
FYDO01000001
Gammaproteobacteria
Pseudomonas sp. Irchel s3f7 [FYDO]
10003
10087
+
Leu
TAA
[ENA]
¡û
>W2010424874
FYDY01000014
Gammaproteobacteria
Pseudomonas sp. Irchel s3b5 [FYDY]
81837
81753
-
Leu
TAA
[ENA]
¡û
>W2010435186
JAAAKX010000036
Gammaproteobacteria
Pseudomonas sp. ODNR1LW [JAAAKX]
20599
20683
+
Leu
TAA
[ENA]
¡û
>W2010435636
JAAALF010000005
Gammaproteobacteria
Pseudomonas sp. BC115LW [JAAALF]
92332
92248
-
Leu
TAA
[ENA]
¡û
>W2010752533
JACMYG010000018
Gammaproteobacteria
Pseudomonas sp. MBT-1 [JACMYG]
8892
8808
-
Leu
TAA
[ENA]
¡û
>W2010889959
MOBM01000017
Gammaproteobacteria
Pseudomonas frederiksbergensis 36C6 [MOBM]
39508
39592
+
Leu
TAA
[ENA]
¡û
>W2011180962
PCQM01000031
Gammaproteobacteria
Pseudomonas sp. MYb115 [PCQM]
9101
9017
-
Leu
TAA
[ENA]
¡û
>C201135189
CP043571
Gammaproteobacteria
Pseudomonas migulae R1-9 [CP043571]
2549852
2549936
+
Leu
TAA
-
¡û
>C231272432
CP090311
Gammaproteobacteria
Pseudomonas kielensis 5BT [CP090311]
941823
941907
+
Leu
TAA
-
¡û
>C241292588
CP130043
Gammaproteobacteria
Pseudomonas kielensis ZE23JCel16 [CP130043]
5650414
5650330
-
Leu
TAA
-
¡û
>W1511399309
JTEN01000132
Gammaproteobacteria
Pseudomonas putida CBB5 [JTEN]
148161
148077
-
Leu
TAA
[ENA]
¡û
>W11169814
AFOY01000018
Gammaproteobacteria
Pseudomonas fluorescens HK44 [AFOY]
17487
17571
+
Leu
TAA
[ENA]
¡û
>W1710536479
FNTF01000002
Gammaproteobacteria
Pseudomonas frederiksbergensis [FNTF]
4367497
4367413
-
Leu
TAA
[ENA]
¡û
>W1710546235
FOCB01000002
Gammaproteobacteria
Pseudomonas sp. ok272 [FOCB]
195889
195805
-
Leu
TAA
[ENA]
¡û
>W1710569442
FOUL01000001
Gammaproteobacteria
Pseudomonas sp. ok602 [FOUL]
196224
196140
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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