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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107614 (74 seq.)
>W1711509532
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
6925548
6925464
-
Tyr
GTA
[ENA]
¡û
>W1711509585
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
7112543
7112459
-
Tyr
GTA
[ENA]
¡û
>C171064214
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
8179371
8179287
-
Tyr
GTA
-
¡û
>C025523
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
2372804
2372888
+
Tyr
GTA
[Ensembl]
¡û
>WENV180012816
FMSI01022071
[FMSI] soil metagenome; Soil
5523
5604
+
Tyr
GTA
[ENA]
¡û
>WENV181411533
OGCI01030269
[OGCI] hot springs metagenome; Hot spring water
982
898
-
Tyr
GTA
[ENA]
¡û
>WENV181414613
OGCL01000819
[OGCL] hot springs metagenome; Hot spring water
13380
13296
-
Tyr
GTA
[ENA]
¡û
>W08008925
ABLR01000003
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
174456
174540
+
Tyr
GTA
[ENA]
¡û
>W08011367
ABVE01000009
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
214134
214053
-
Tyr
GTA
[ENA]
¡û
>W141242370
CAIH01000175
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
15287
15203
-
Tyr
GTA
[ENA]
¡û
>W141242538
CAIL01000261
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
63935
63851
-
Tyr
GTA
[ENA]
¡û
>WENV170994834
MWWE01065167
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
427
343
-
Tyr
GTA
[ENA]
¡û
>WENV170996704
MWWF01380113
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
210
294
+
Tyr
GTA
[ENA]
¡û
>WENV170998944
MWWJ01171377
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
207
126
-
Tyr
GTA
[ENA]
¡û
>CHL1810049942
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
145814
145733
-
Tyr
GTA
[ENA]
¡û
>CHL1810049989
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
144526
144445
-
Tyr
GTA
[ENA]
¡û
>C181030459
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
93065
93149
+
Tyr
GTA
-
¡û
>C191001210
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
2241812
2241893
+
Tyr
GTA
-
¡û
>C191085219
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
1570397
1570478
+
Tyr
GTA
-
¡û
>C141007935
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1677284
1677365
+
Tyr
GTA
-
¡û
>W1810521248
QCHP01000056
Cyanobacteriota
Prochlorococcus sp. AG-402-E17 [QCHP]
1184
1101
-
Tyr
GTA
[ENA]
¡û
>W2010088839
BJCI01000007
Cyanobacteriota
Microcystis aeruginosa NIES-3804 [BJCI]
64293
64377
+
Tyr
GTA
[ENA]
¡û
>W2010681492
JACEGC010000068
Cyanobacteriota
Microcystis aeruginosa BLCCF158 [JACEGC]
16275
16191
-
Tyr
GTA
[ENA]
¡û
>W2011680649
SRRZ01000057
Cyanobacteriota
Microcoleus sp. IPMA8 [SRRZ]
35833
35917
+
Tyr
GTA
[ENA]
¡û
>W2110226372
JACJNY010000063
Cyanobacteriota
Microcoleus sp. FACHB-61 [JACJNY]
19808
19724
-
Tyr
GTA
[ENA]
¡û
>W2110227573
JACJOT010000018
Cyanobacteriota
Microcoleus sp. FACHB-68 [JACJOT]
122505
122421
-
Tyr
GTA
[ENA]
¡û
>W2110227626
JACJOU010000028
Cyanobacteriota
Microcoleus sp. FACHB-672 [JACJOU]
31596
31680
+
Tyr
GTA
[ENA]
¡û
>W2110228334
JACJPI010000064
Cyanobacteriota
Leptolyngbya sp. FACHB-321 [JACJPI]
260934
261020
+
Tyr
GTA
[ENA]
¡û
>W2110228380
JACJPJ010000039
Cyanobacteriota
Oculatella sp. FACHB-28 [JACJPJ]
28016
28100
+
Tyr
GTA
[ENA]
¡û
>W2110228445
JACJPK010000086
Cyanobacteriota
Trichocoleus sp. FACHB-262 [JACJPK]
455285
455204
-
Tyr
GTA
[ENA]
¡û
>W2110228535
JACJPM010000076
Cyanobacteriota
Leptolyngbya sp. FACHB-17 [JACJPM]
69461
69542
+
Tyr
GTA
[ENA]
¡û
>W2110228839
JACJPR010000070
Cyanobacteriota
Microcoleus sp. FACHB-1 [JACJPR]
93700
93616
-
Tyr
GTA
[ENA]
¡û
>W2110229922
JACJQO010000022
Cyanobacteriota
Pseudanabaena sp. FACHB-2040 [JACJQO]
345105
345019
-
Tyr
GTA
[ENA]
¡û
>W2110230982
JACJRK010000002
Cyanobacteriota
Leptolyngbya sp. FACHB-161 [JACJRK]
73531
73450
-
Tyr
GTA
[ENA]
¡û
>W2110232269
JACJSK010000024
Cyanobacteriota
Planktothricoides sp. FACHB-1370 [JACJSK]
7207
7123
-
Tyr
GTA
[ENA]
¡û
>W2110233214
JACJTF010000019
Cyanobacteriota
Planktothricoides sp. FACHB-1261 [JACJTF]
11021
10937
-
Tyr
GTA
[ENA]
¡û
>W2110311631
JADEWT010000055
Cyanobacteriota
Tychonema sp. LEGE 06208 [JADEWT]
6154
6070
-
Tyr
GTA
[ENA]
¡û
>W2110312063
JADEXB010000001
Cyanobacteriota
Tychonema sp. LEGE 07196 [JADEXB]
172619
172703
+
Tyr
GTA
[ENA]
¡û
>W2110312154
JADEXC010000045
Cyanobacteriota
Tychonema sp. LEGE 07199 [JADEXC]
35840
35924
+
Tyr
GTA
[ENA]
¡û
>W2110312219
JADEXD010000091
Cyanobacteriota
Tychonema sp. LEGE 07203 [JADEXD]
11499
11583
+
Tyr
GTA
[ENA]
¡û
>W2110457026
JAEVYN010000002
Cyanobacteriota
Phormidium sp. CLA17 [JAEVYN]
2198071
2198157
+
Tyr
GTA
[ENA]
¡û
>W2110512130
JAFLQW010000426
Cyanobacteriota
Phormidium pseudopriestleyi FRX01 [JAFLQW]
19224
19308
+
Tyr
GTA
[ENA]
¡û
>C201088928
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
951084
951165
+
Tyr
GTA
-
¡û
>C211085978
CP051168
Cyanobacteriota
[Phormidium] sp. ETS-05 [CP051168]
5726022
5725939
-
Tyr
GTA
-
¡û
>C211280902
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
1807337
1807418
+
Tyr
GTA
-
¡û
>C231030696
CP017708
Cyanobacteriota
Moorena producens JHB [CP017708]
7820868
7820784
-
Tyr
GTA
-
¡û
>C231396179
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
1508385
1508304
-
Tyr
GTA
-
¡û
>W2130019677
JADEWV010000228
Cyanobacteriota
Microcoleus sp. LEGE 07076 [JADEWV]
6005
5921
-
Tyr
GTA
[ENA]
¡û
>C241188868
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
966088
966169
+
Tyr
GTA
-
¡û
>C241190846
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
961475
961556
+
Tyr
GTA
-
¡û
>C241192262
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
967579
967660
+
Tyr
GTA
-
¡û
>C241293651
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
1828649
1828730
+
Tyr
GTA
-
¡û
>C241293683
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
959054
959135
+
Tyr
GTA
-
¡û
>C241293739
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
1451329
1451248
-
Tyr
GTA
-
¡û
>C241316039
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
1801212
1801293
+
Tyr
GTA
-
¡û
>C241316077
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
1829416
1829497
+
Tyr
GTA
-
¡û
>C241316115
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
1829566
1829647
+
Tyr
GTA
-
¡û
>C241316153
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
1801011
1801092
+
Tyr
GTA
-
¡û
>C241316191
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
1799533
1799614
+
Tyr
GTA
-
¡û
>C241316229
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
1799557
1799638
+
Tyr
GTA
-
¡û
>C241316267
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
1797914
1797995
+
Tyr
GTA
-
¡û
>C241316305
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
1797917
1797998
+
Tyr
GTA
-
¡û
>C241316343
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
1797836
1797917
+
Tyr
GTA
-
¡û
>C241316381
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
1817414
1817495
+
Tyr
GTA
-
¡û
>C241316419
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
1817484
1817565
+
Tyr
GTA
-
¡û
>C241316457
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
1817691
1817772
+
Tyr
GTA
-
¡û
>C241316495
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
1820424
1820505
+
Tyr
GTA
-
¡û
>C241316533
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
1820424
1820505
+
Tyr
GTA
-
¡û
>C241316583
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
1451330
1451249
-
Tyr
GTA
-
¡û
>C241316609
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
1796757
1796838
+
Tyr
GTA
-
¡û
>C241316641
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
959054
959135
+
Tyr
GTA
-
¡û
>C241316679
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
959054
959135
+
Tyr
GTA
-
¡û
>C241316781
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
963781
963862
+
Tyr
GTA
-
¡û
>W11143173
AEPQ01000236
Cyanobacteriota
Moorena producens 3L [AEPQ]
22468
22552
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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