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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107678 (46 seq.)
>W131036468
ALVR01000007
Cyanobacteriota
Spirulina subsalsa PCC 9445 [ALVR]
1223837
1223753
-
Tyr
GTA
[ENA]
¡û
>W1711190060
LWRO01000063
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
15258
15339
+
Tyr
GTA
[ENA]
¡û
>W1711460790
MJGC01000085
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
22091
22006
-
Tyr
GTA
[ENA]
¡û
>C021117
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
697656
697572
-
Tyr
GTA
[Ensembl]
¡û
>C021133
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
923151
923235
+
Tyr
GTA
[Ensembl]
¡û
>C025143
CP000097
Cyanobacteriota
Synechococcus sp. CC9902 [CP000097]
1758329
1758413
+
Tyr
GTA
[Ensembl]
¡û
>WENV180100805
OAOT01000044
[OAOT] marine metagenome; Mesotrophic water
2247
2330
+
Tyr
GTA
[ENA]
¡û
>WENV180115516
OAPT01005110
[OAPT] marine metagenome; seawater
336
419
+
Tyr
GTA
[ENA]
¡û
>WENV180375672
OBOL01044863
[OBOL] marine metagenome; Surface water
295
214
-
Tyr
GTA
[ENA]
¡û
>WENV180382220
OBOS01157794
[OBOS] marine metagenome; ENVO 00002150
142
59
-
Tyr
GTA
[ENA]
¡û
>WENV180384855
OBOY01084659
[OBOY] marine metagenome; Sterile flask
99
18
-
Tyr
GTA
[ENA]
¡û
>WENV180389342
OBPJ01004052
[OBPJ] marine metagenome; seawater
628
547
-
Tyr
GTA
[ENA]
¡û
>WENV180392070
OBPO01004874
[OBPO] marine metagenome; seawater
521
440
-
Tyr
GTA
[ENA]
¡û
>WENV180594807
OCPA01012146
[OCPA] marine metagenome; ENVO:00002010
353
270
-
Tyr
GTA
[ENA]
¡û
>WENV181092566
OEBK01008824
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
518
601
+
Tyr
GTA
[ENA]
¡û
>WENV181120768
OEFK01053241
[OEFK] marine metagenome; ENVO:00002010 seawater
302
385
+
Tyr
GTA
[ENA]
¡û
>WENV182571269
OJFG01005339
[OJFG] seawater metagenome; Sea water
1067
1148
+
Tyr
GTA
[ENA]
¡û
>WENV183808392
PVBE011291208
[PVBE] marine metagenome; water
453
534
+
Tyr
GTA
[ENA]
¡û
>WENV170146488
CENZ01058002
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
82
1
-
Tyr
GTA
[ENA]
¡û
>WENV170324460
CESS01085071
[CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1335
1416
+
Tyr
GTA
[ENA]
¡û
>WENV170602944
FUWD010276076
[FUWD] metagenome; unknown
84
168
+
Tyr
GTA
[ENA]
¡û
>W09101098
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
211774
211858
+
Tyr
GTA
[ENA]
¡û
>C191099589
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
197379
197296
-
Tyr
GTA
-
¡û
>W1910339368
FSSI01000024
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
1977
1894
-
Tyr
GTA
[ENA]
¡û
>W1910339415
FSSI02000024
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
1977
1894
-
Tyr
GTA
[ENA]
¡û
>W1810366181
PVWD01000016
Cyanobacteriota
filamentous cyanobacterium CCP2 [PVWD]
31457
31376
-
Tyr
GTA
[ENA]
¡û
>W1810529756
QCVA01000012
Cyanobacteriota
Synechococcus sp. AG-683-A22 [QCVA]
16620
16703
+
Tyr
GTA
[ENA]
¡û
>W1810529788
QCVC01000001
Cyanobacteriota
Synechococcus sp. AG-683-B21 [QCVC]
55717
55634
-
Tyr
GTA
[ENA]
¡û
>C151009166
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
2341313
2341229
-
Tyr
GTA
[Ensembl]
¡û
>W2010072401
ATDS01000001
Cyanobacteriota
Microcoleus sp. IPPAS B-353 [ATDS]
3094289
3094204
-
Tyr
GTA
[ENA]
¡û
>W2010396043
FSSI01000024
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
1977
1894
-
Tyr
GTA
[ENA]
¡û
>W2010396090
FSSI02000024
Cyanobacteriota
Phormidium sp. HE10JO [FSSI]
1977
1894
-
Tyr
GTA
[ENA]
¡û
>W2011632519
SMDP01000239
Cyanobacteriota
Geitlerinema sp. P-1104 [SMDP]
1733
1650
-
Tyr
GTA
[ENA]
¡û
>ENV09001612
ABVN01005999
Marine metagenome gcontig_contig00001
132
50
-
Tyr
GTA
[ENA]
¡û
>W2110230426
JACJQZ010000033
Cyanobacteriota
Desertifilum sp. FACHB-1129 [JACJQZ]
60766
60682
-
Tyr
GTA
[ENA]
¡û
>W2110230471
JACJRA010000014
Cyanobacteriota
Desertifilum sp. FACHB-866 [JACJRA]
170584
170500
-
Tyr
GTA
[ENA]
¡û
>W2110230535
JACJRB010000031
Cyanobacteriota
Desertifilum sp. FACHB-868 [JACJRB]
61451
61367
-
Tyr
GTA
[ENA]
¡û
>W2110232843
JACJSY010000002
Cyanobacteriota
Synechococcus elongatus FACHB-242 [JACJSY]
19089
19172
+
Tyr
GTA
[ENA]
¡û
>W2110233932
JACJTW010000002
Cyanobacteriota
Synechococcus elongatus FACHB-1061 [JACJTW]
511552
511469
-
Tyr
GTA
[ENA]
¡û
>W2110233982
JACJTX010000003
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [JACJTX]
511578
511495
-
Tyr
GTA
[ENA]
¡û
>W2110312271
JADEXE010000432
Cyanobacteriota
Nodosilinea sp. LEGE 07298 [JADEXE]
2583
2664
+
Tyr
GTA
[ENA]
¡û
>W2110312772
JADEXQ010000078
Cyanobacteriota
filamentous cyanobacterium LEGE 11480 [JADEXQ]
5318
5399
+
Tyr
GTA
[ENA]
¡û
>C211072867
CP047946
Cyanobacteriota
Synechococcus sp. ROS8604 [CP047946]
661699
661618
-
Tyr
GTA
-
¡û
>C231143081
CP075902
Cyanobacteriota
Phormidium sp. PBR-2020 [CP075902]
445142
445225
+
Tyr
GTA
-
¡û
>C231213191
CP085785
Cyanobacteriota
Synechococcus elongatus PCC 6301 [CP085785]
922636
922719
+
Tyr
GTA
-
¡û
>W1610992179
LWRO01000063
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
15258
15339
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK