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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.107679 (121 seq.)
>W1711092974
LTEP01000023
Actinomycetota
Rothia sp. HMSC069C10 [LTEP]
42267
42351
+
Tyr
GTA
[ENA]
¡û
>W1711093245
LTEV01000033
Actinomycetota
Rothia sp. HMSC065C12 [LTEV]
7410
7326
-
Tyr
GTA
[ENA]
¡û
>W1711095381
LTGT01000041
Actinomycetota
Rothia sp. HMSC069C03 [LTGT]
43050
43134
+
Tyr
GTA
[ENA]
¡û
>W1711104731
LTQB01000054
Actinomycetota
Rothia sp. HMSC062F03 [LTQB]
125701
125785
+
Tyr
GTA
[ENA]
¡û
>W1711105008
LTQJ01000030
Actinomycetota
Rothia sp. HMSC061D12 [LTQJ]
7410
7326
-
Tyr
GTA
[ENA]
¡û
>W1711108454
LTTT01000024
Actinomycetota
Rothia sp. HMSC066H02 [LTTT]
757
841
+
Tyr
GTA
[ENA]
¡û
>W1711109625
LTUU01000044
Actinomycetota
Rothia sp. HMSC066G07 [LTUU]
7459
7375
-
Tyr
GTA
[ENA]
¡û
>W1711110551
LTVR01000006
Actinomycetota
Rothia sp. HMSC072E10 [LTVR]
83399
83483
+
Tyr
GTA
[ENA]
¡û
>W1711110661
LTVT01000023
Actinomycetota
Rothia sp. HMSC071C12 [LTVT]
151035
150951
-
Tyr
GTA
[ENA]
¡û
>W1711111096
LTWD01000053
Actinomycetota
Rothia sp. HMSC072B04 [LTWD]
42136
42220
+
Tyr
GTA
[ENA]
¡û
>W1711111150
LTWE01000055
Actinomycetota
Rothia sp. HMSC061E04 [LTWE]
225652
225568
-
Tyr
GTA
[ENA]
¡û
>W1711111437
LTWL01000051
Actinomycetota
Rothia sp. HMSC068E02 [LTWL]
13021
13105
+
Tyr
GTA
[ENA]
¡û
>W1711112108
LTXD01000004
Actinomycetota
Rothia sp. HMSC066G02 [LTXD]
42531
42615
+
Tyr
GTA
[ENA]
¡û
>W1711112543
LTXN01000022
Actinomycetota
Rothia sp. HMSC073B08 [LTXN]
131828
131744
-
Tyr
GTA
[ENA]
¡û
>W1711589215
MODZ01000009
Actinomycetota
Rothia kristinae [MODZ]
82447
82363
-
Tyr
GTA
[ENA]
¡û
>W1711667009
MRDE01000006
Actinomycetota
Tersicoccus phoenicis [MRDE]
14256
14172
-
Tyr
GTA
[ENA]
¡û
>WENV180004239
FLRR01034107
[FLRR] metagenome; saliva
69
151
+
Tyr
GTA
[ENA]
¡û
>WENV180007619
FLSA01124231
[FLSA] metagenome; saliva
1441
1523
+
Tyr
GTA
[ENA]
¡û
>WENV180007714
FLSA01215643
[FLSA] metagenome; saliva
59
141
+
Tyr
GTA
[ENA]
¡û
>WENV180142129
OATV01002068
[OATV] human gut metagenome; faeces
1844
1926
+
Tyr
GTA
[ENA]
¡û
>WENV180168453
OAVR01000104
[OAVR] human gut metagenome; faeces
7104
7022
-
Tyr
GTA
[ENA]
¡û
>WENV180171356
OAVW01000267
[OAVW] human gut metagenome; faeces
15824
15906
+
Tyr
GTA
[ENA]
¡û
>WENV180421820
OBVR01001020
[OBVR] human gut metagenome; faeces
1186
1104
-
Tyr
GTA
[ENA]
¡û
>WENV180457067
OBXT01005039
[OBXT] human gut metagenome; faeces
681
599
-
Tyr
GTA
[ENA]
¡û
>WENV180492818
OBZX01003017
[OBZX] human gut metagenome; faeces
1087
1005
-
Tyr
GTA
[ENA]
¡û
>WENV180549809
OCIZ01000334
[OCIZ] human oral metagenome; human oral
9135
9053
-
Tyr
GTA
[ENA]
¡û
>WENV180565458
OCLG01000093
[OCLG] human oral metagenome; Infant 2 DOL 28 oral
32242
32324
+
Tyr
GTA
[ENA]
¡û
>WENV180696480
ODCT01005850
[ODCT] human metagenome; G_DNA_Buccal mucosa
615
533
-
Tyr
GTA
[ENA]
¡û
>WENV180704622
ODEJ01000002
[ODEJ] human metagenome; G_DNA_Tongue dorsum
157466
157384
-
Tyr
GTA
[ENA]
¡û
>WENV180717435
ODGE01000005
[ODGE] human metagenome; G_DNA_Buccal mucosa
181220
181138
-
Tyr
GTA
[ENA]
¡û
>WENV180745954
ODHM01000293
[ODHM] human metagenome; G_DNA_Buccal mucosa
9560
9642
+
Tyr
GTA
[ENA]
¡û
>WENV180757753
ODHW01001687
[ODHW] human metagenome; G_DNA_Tongue dorsum
5670
5588
-
Tyr
GTA
[ENA]
¡û
>WENV180763509
ODIA01001311
[ODIA] human metagenome; G_DNA_Tongue dorsum
6149
6231
+
Tyr
GTA
[ENA]
¡û
>WENV180774487
ODIJ01027070
[ODIJ] human metagenome; G_DNA_Tongue dorsum
478
396
-
Tyr
GTA
[ENA]
¡û
>WENV180774494
ODIJ01027533
[ODIJ] human metagenome; G_DNA_Tongue dorsum
429
347
-
Tyr
GTA
[ENA]
¡û
>WENV180775884
ODIK01006781
[ODIK] human metagenome; G_DNA_Tongue dorsum
1107
1189
+
Tyr
GTA
[ENA]
¡û
>WENV180805549
ODJH01000038
[ODJH] human metagenome; G_DNA_Tongue dorsum
871
789
-
Tyr
GTA
[ENA]
¡û
>WENV180821289
ODJS01003401
[ODJS] human metagenome; G_DNA_Tongue dorsum
3610
3692
+
Tyr
GTA
[ENA]
¡û
>WENV180864525
ODLH01057142
[ODLH] human metagenome; G_DNA_Tongue dorsum
400
482
+
Tyr
GTA
[ENA]
¡û
>WENV180872930
ODLP01000361
[ODLP] human metagenome; G_DNA_Tongue dorsum
24813
24895
+
Tyr
GTA
[ENA]
¡û
>WENV180874103
ODLP01152258
[ODLP] human metagenome; G_DNA_Tongue dorsum
29
111
+
Tyr
GTA
[ENA]
¡û
>WENV180879519
ODLZ01000840
[ODLZ] human metagenome; G_DNA_Tongue dorsum
11117
11199
+
Tyr
GTA
[ENA]
¡û
>WENV180879602
ODLZ01001106
[ODLZ] human metagenome; G_DNA_Tongue dorsum
7545
7463
-
Tyr
GTA
[ENA]
¡û
>WENV180883923
ODMC01023805
[ODMC] human metagenome; G_DNA_Tongue dorsum
94
11
-
Tyr
GTA
[ENA]
¡û
>WENV180890271
ODMO01000526
[ODMO] human metagenome; G_DNA_Tongue dorsum
14834
14752
-
Tyr
GTA
[ENA]
¡û
>WENV180896230
ODNI01000219
[ODNI] human metagenome; G_DNA_Tongue dorsum
41480
41562
+
Tyr
GTA
[ENA]
¡û
>WENV180900305
ODOJ01001040
[ODOJ] human metagenome; G_DNA_Tongue dorsum
16963
17045
+
Tyr
GTA
[ENA]
¡û
>WENV180901583
ODOK01000744
[ODOK] human metagenome; G_DNA_Tongue dorsum
5971
6053
+
Tyr
GTA
[ENA]
¡û
>WENV180931706
ODTP01008321
[ODTP] human metagenome; G_DNA_Tongue dorsum
3078
3160
+
Tyr
GTA
[ENA]
¡û
>WENV180946066
ODUD01004781
[ODUD] human metagenome; G_DNA_Tongue dorsum
911
829
-
Tyr
GTA
[ENA]
¡û
>WENV180952824
ODUI01002878
[ODUI] human metagenome; G_DNA_Tongue dorsum
6299
6381
+
Tyr
GTA
[ENA]
¡û
>WENV180959095
ODUM01000062
[ODUM] human metagenome; G_DNA_Tongue dorsum
59852
59770
-
Tyr
GTA
[ENA]
¡û
>WENV180988062
ODVL01000072
[ODVL] human metagenome; G_DNA_Tongue dorsum
24259
24177
-
Tyr
GTA
[ENA]
¡û
>WENV181037730
ODXQ01000004
[ODXQ] human metagenome; G_DNA_Tongue dorsum
55877
55959
+
Tyr
GTA
[ENA]
¡û
>WENV181065661
ODYV01000002
[ODYV] human metagenome; G_DNA_Buccal mucosa
48809
48891
+
Tyr
GTA
[ENA]
¡û
>WENV181069507
ODZZ01070478
[ODZZ] human metagenome; G_DNA_Tongue dorsum
346
264
-
Tyr
GTA
[ENA]
¡û
>WENV181103008
OECT01019226
[OECT] human metagenome; G_DNA_Tongue dorsum
991
909
-
Tyr
GTA
[ENA]
¡û
>WENV181105519
OEED01006108
[OEED] human metagenome; G_DNA_Tongue dorsum
3672
3754
+
Tyr
GTA
[ENA]
¡û
>WENV181108463
OEEJ01000026
[OEEJ] human metagenome; G_DNA_Tongue dorsum
171179
171097
-
Tyr
GTA
[ENA]
¡û
>WENV181112980
OEEL01007794
[OEEL] human metagenome; G_DNA_Tongue dorsum
2790
2708
-
Tyr
GTA
[ENA]
¡û
>WENV181130348
OEFY01006781
[OEFY] human metagenome; G_DNA_Throat
1392
1474
+
Tyr
GTA
[ENA]
¡û
>WENV181176800
OEJR01046109
[OEJR] human metagenome; G_DNA_Saliva
252
334
+
Tyr
GTA
[ENA]
¡û
>WENV182539840
OIXV01020503
[OIXV] human gut metagenome; faeces
931
1013
+
Tyr
GTA
[ENA]
¡û
>WENV182941509
OKVG01002272
[OKVG] human gut metagenome; human gut
4712
4794
+
Tyr
GTA
[ENA]
¡û
>W09135385
ACVO01000015
Actinomycetota
Rothia mucilaginosa ATCC 25296 [ACVO]
181620
181704
+
Tyr
GTA
[ENA]
¡û
>C181055962
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
1214954
1214871
-
Tyr
GTA
-
¡û
>C191144199
CP035504
Actinomycetota
Kocuria indica CE7 [CP035504]
645228
645310
+
Tyr
GTA
-
¡û
>W1910183594
BJNW01000001
Actinomycetota
Kocuria varians NBRC 15358 [BJNW]
226269
226187
-
Tyr
GTA
[ENA]
¡û
>W1910471662
FXBD01000032
Actinomycetota
Kocuria marina [FXBD]
16808
16725
-
Tyr
GTA
[ENA]
¡û
>W1911114585
NOIR01000001
Actinomycetota
Kocuria sp. 257 [NOIR]
900550
900633
+
Tyr
GTA
[ENA]
¡û
>W1911114782
NOIV01000002
Actinomycetota
Kocuria kristinae ATCC 27570 [NOIV]
342352
342435
+
Tyr
GTA
[ENA]
¡û
>W1911200150
NREM01000015
Actinomycetota
Mycobacterium abscessus subsp. abscessus A229 [NREM]
132499
132416
-
Tyr
GTA
[ENA]
¡û
>W1911532914
OIWY01000006
Actinomycetota
Brachybacterium sp. Marseille-P4339 [OIWY]
922564
922481
-
Tyr
GTA
[ENA]
¡û
>W1810200174
PNRK01000001
Actinomycetota
Kocuria rhizophila D2 [PNRK]
152246
152163
-
Tyr
GTA
[ENA]
¡û
>W2010405938
FWFI01000020
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
74140
74057
-
Tyr
GTA
[ENA]
¡û
>W2010410567
FXBD01000032
Actinomycetota
Kocuria marina [FXBD]
16808
16725
-
Tyr
GTA
[ENA]
¡û
>W2011022891
NPGE01000002
Actinomycetota
Kocuria varians 80 [NPGE]
139292
139209
-
Tyr
GTA
[ENA]
¡û
>W2011392575
RCCM01000006
Actinomycetota
Kocuria sp. OV113 [RCCM]
1043336
1043253
-
Tyr
GTA
[ENA]
¡û
>W2011402152
RCOM01000119
Actinomycetota
Kocuria rhizophila TA68 [RCOM]
195
112
-
Tyr
GTA
[ENA]
¡û
>W2011671477
SPNK01000001
Actinomycetota
Kocuria sp. 4R-31 [SPNK]
9137
9220
+
Tyr
GTA
[ENA]
¡û
>W2011997033
VECX01000001
Actinomycetota
Kocuria rhizophila DC2201 DE0228 [VECX]
433112
433030
-
Tyr
GTA
[ENA]
¡û
>W2011997750
VEDQ01000001
Actinomycetota
Kocuria rhizophila DE0200 [VEDQ]
29127
29210
+
Tyr
GTA
[ENA]
¡û
>W2012104385
VOIL01000001
Actinomycetota
Nesterenkonia populi DSM 27959 [VOIL]
306232
306150
-
Tyr
GTA
[ENA]
¡û
>W2110103859
CAJFZU010000019
Actinomycetota
Kocuria rhizophila Marseille-P2672 [CAJFZU]
7588
7505
-
Tyr
GTA
[ENA]
¡û
>W2110306155
JADDTO010000231
Actinomycetota
H6(2020) [JADDTO]
668
585
-
Tyr
GTA
[ENA]
¡û
>W2110313318
JADEYR010000001
Actinomycetota
Brachybacterium sp. Marseille-Q2903 [JADEYR]
280699
280781
+
Tyr
GTA
[ENA]
¡û
>W2110371580
JADPWM010000015
Actinomycetota
Rothia kristinae GM [JADPWM]
45138
45055
-
Tyr
GTA
[ENA]
¡û
>W2110437395
JAEOAT010000099
Actinomycetota
Kocuria rhizophila H09 [JAEOAT]
92
175
+
Tyr
GTA
[ENA]
¡û
>W2110458496
JAFBCB010000001
Actinomycetota
Brachybacterium muris DSM 15460 [JAFBCB]
2381668
2381585
-
Tyr
GTA
[ENA]
¡û
>W2110477604
JAFDPQ010000001
Actinomycetota
Kocuria indica F5_7S_P6 [JAFDPQ]
395406
395489
+
Tyr
GTA
[ENA]
¡û
>W2110535916
JAGFVR010000010
Actinomycetota
Kocuria rhizophila 28R2A-13 [JAGFVR]
9184
9267
+
Tyr
GTA
[ENA]
¡û
>W2110553592
JAGIOC010000001
Actinomycetota
Brachybacterium fresconis DSM 14564 [JAGIOC]
1287529
1287446
-
Tyr
GTA
[ENA]
¡û
>C211222093
CP066078
Actinomycetota
Rothia kristinae FDAARGOS_1001 [CP066078]
2010397
2010480
+
Tyr
GTA
-
¡û
>C231378407
CP097094
Actinomycetota
Rothia mucilaginosa [CP097094]
429972
430054
+
Tyr
GTA
-
¡û
>C231380059
CP097204
Actinomycetota
Kocuria rhizophila Noodlococcus [CP097204]
2688903
2688820
-
Tyr
GTA
-
¡û
>C231429148
CP100650
Actinomycetota
Brachybacterium sp. NBEC-018 [CP100650]
1968005
1968088
+
Tyr
GTA
-
¡û
>C241006840
AP022834
Actinomycetota
Kocuria sp. TGY1127_2 [AP022834]
792806
792889
+
Tyr
GTA
-
¡û
>C241064688
CP042335
Actinomycetota
Nesterenkonia sp. NBAIMH1 [CP042335]
1657928
1658011
+
Tyr
GTA
-
¡û
>W2130035564
JAHCRL010000171
Actinomycetota
Kocuria salsicia BF1 [JAHCRL]
272
189
-
Tyr
GTA
[ENA]
¡û
>C10110697
AP011540
Actinomycetota
Rothia mucilaginosa DY-18 [AP011540]
417235
417319
+
Tyr
GTA
[Ensembl]
¡û
>W11104618
ACSB01000005
Actinomycetota
Rothia mucilaginosa M508 [ACSB]
116419
116503
+
Tyr
GTA
[ENA]
¡û
>W1511317237
JPWX01000366
Actinomycetota
Kocuria rhizophila RF [JPWX]
79
163
+
Tyr
GTA
[ENA]
¡û
>W1511440047
JUOQ01000062
Actinomycetota
Rothia mucilaginosa 902_RMUC [JUOQ]
7439
7355
-
Tyr
GTA
[ENA]
¡û
>W1511443395
JUSX01000014
Actinomycetota
Rothia mucilaginosa 788_RMUC [JUSX]
5312
5396
+
Tyr
GTA
[ENA]
¡û
>W1511449783
JVBL01000102
Actinomycetota
Rothia mucilaginosa 574_RMUC [JVBL]
7108
7024
-
Tyr
GTA
[ENA]
¡û
>W1511452602
JVEI01000034
Actinomycetota
Rothia mucilaginosa 509_RMUC [JVEI]
244929
244845
-
Tyr
GTA
[ENA]
¡û
>W1511458393
JVJH01001078
Actinomycetota
Rothia mucilaginosa 382_RMUC [JVJH]
880
796
-
Tyr
GTA
[ENA]
¡û
>W1511460403
JVLK01000088
Actinomycetota
Rothia mucilaginosa 329_RMUC [JVLK]
7502
7418
-
Tyr
GTA
[ENA]
¡û
>W1511464454
JVPY01000001
Actinomycetota
Rothia mucilaginosa 207_RMUC [JVPY]
167961
167877
-
Tyr
GTA
[ENA]
¡û
>W1511471951
JVYQ01000019
Actinomycetota
Rothia mucilaginosa 1211_RMUC [JVYQ]
41846
41930
+
Tyr
GTA
[ENA]
¡û
>W11163684
AFID01000002
Actinomycetota
Kocuria rhizophila P7-4 [AFID]
447736
447652
-
Tyr
GTA
[ENA]
¡û
>C161002126
AP014938
Actinomycetota
Rothia mucilaginosa NUM-Rm6536 [AP014938]
1436328
1436412
+
Tyr
GTA
[Ensembl]
¡û
>W1610069455
BCSM01000009
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
27381
27465
+
Tyr
GTA
[ENA]
¡û
>W1610112474
CZJX01000044
Actinomycetota
Kocuria varians [CZJX]
84324
84242
-
Tyr
GTA
[ENA]
¡û
>W1610590125
LDRE01000039
Actinomycetota
Rothia kristinae [LDRE]
6950
7034
+
Tyr
GTA
[ENA]
¡û
>W1610590201
LDRG01000020
Actinomycetota
Rothia kristinae [LDRG]
6989
7073
+
Tyr
GTA
[ENA]
¡û
>W1610590237
LDRH01000010
Actinomycetota
Rothia kristinae [LDRH]
3109
3025
-
Tyr
GTA
[ENA]
¡û
>W1610641489
LJBJ02000032
Actinomycetota
Rothia kristinae [LJBJ]
3169
3085
-
Tyr
GTA
[ENA]
¡û
>W1710066828
BCSM01000009
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
27381
27465
+
Tyr
GTA
[ENA]
¡û
>W1710115178
CZJX01000044
Actinomycetota
Kocuria varians [CZJX]
84324
84242
-
Tyr
GTA
[ENA]
¡û
>W1710709588
LDRI01000088
Actinomycetota
Rothia kristinae [LDRI]
4052
3968
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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