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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10780 (72 seq.)
>W1711624674
MPHL01000008
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
76168
76259
+
Ser
GCT
[ENA]
¡û
>W1711767390
MUZU01000007
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
189555
189464
-
Ser
GCT
[ENA]
¡û
>W1711767450
MUZV01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
18068
17977
-
Ser
GCT
[ENA]
¡û
>W1711767454
MUZV01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
17079
16988
-
Ser
GCT
[ENA]
¡û
>W1711947417
NBOC01000002
Gammaproteobacteria
Colwellia chukchiensis [NBOC]
372195
372286
+
Ser
GCT
[ENA]
¡û
>W1711947474
NBOD01000002
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
18100
18009
-
Ser
GCT
[ENA]
¡û
>W1711947478
NBOD01000002
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
17111
17020
-
Ser
GCT
[ENA]
¡û
>W1711947564
NBOE01000006
Gammaproteobacteria
Colwellia polaris [NBOE]
193967
194058
+
Ser
GCT
[ENA]
¡û
>W1711947638
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
594681
594772
+
Ser
GCT
[ENA]
¡û
>W1711947641
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
595402
595493
+
Ser
GCT
[ENA]
¡û
>W1711947691
NBOG01000001
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
73925
73834
-
Ser
GCT
[ENA]
¡û
>C171034506
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
745878
745787
-
Ser
GCT
-
¡û
>C171108335
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
701088
701179
+
Ser
GCT
-
¡û
>WENV182540223
OJAF01000358
[OJAF] seawater metagenome; Sea water
524
433
-
Ser
GCT
[ENA]
¢þ
>WENV182542225
OJAV01013920
[OJAV] seawater metagenome; Sea water
324
233
-
Ser
GCT
[ENA]
¢þ
>WENV182542797
OJAZ01002479
[OJAZ] seawater metagenome; Sea water
298
207
-
Ser
GCT
[ENA]
¢þ
>WENV182543693
OJBC01000328
[OJBC] seawater metagenome; Sea water
11164
11073
-
Ser
GCT
[ENA]
¢þ
>WENV182544615
OJBI01000179
[OJBI] seawater metagenome; Sea water
14324
14415
+
Ser
GCT
[ENA]
¢þ
>WENV182545074
OJBM01000018
[OJBM] seawater metagenome; Sea water
110311
110402
+
Ser
GCT
[ENA]
¢þ
>WENV182546306
OJBO01007724
[OJBO] seawater metagenome; Sea water
550
641
+
Ser
GCT
[ENA]
¢þ
>WENV182547537
OJBS01022585
[OJBS] seawater metagenome; Sea water
116
25
-
Ser
GCT
[ENA]
¢þ
>WENV182549206
OJBY01000002
[OJBY] seawater metagenome; Sea water
357210
357301
+
Ser
GCT
[ENA]
¢þ
>WENV182550085
OJBZ01002687
[OJBZ] seawater metagenome; Sea water
4238
4329
+
Ser
GCT
[ENA]
¢þ
>WENV182552471
OJCK01000281
[OJCK] seawater metagenome; Sea water
8731
8822
+
Ser
GCT
[ENA]
¢þ
>WENV182554727
OJCW01003729
[OJCW] seawater metagenome; Sea water
292
201
-
Ser
GCT
[ENA]
¢þ
>WENV182556814
OJDH01000149
[OJDH] seawater metagenome; Sea water
292
201
-
Ser
GCT
[ENA]
¢þ
>WENV182557080
OJDI01000725
[OJDI] seawater metagenome; Sea water
2850
2759
-
Ser
GCT
[ENA]
¢þ
>WENV182557875
OJDL01000300
[OJDL] seawater metagenome; Sea water
11164
11073
-
Ser
GCT
[ENA]
¢þ
>WENV182558747
OJDN01002331
[OJDN] seawater metagenome; Sea water
4438
4529
+
Ser
GCT
[ENA]
¢þ
>WENV182560004
OJDR01000157
[OJDR] seawater metagenome; Sea water
596
505
-
Ser
GCT
[ENA]
¢þ
>WENV182560632
OJDU01013215
[OJDU] seawater metagenome; Sea water
621
712
+
Ser
GCT
[ENA]
¢þ
>WENV182561187
OJDV01012705
[OJDV] seawater metagenome; Sea water
1222
1131
-
Ser
GCT
[ENA]
¢þ
>WENV182562351
OJDZ01001206
[OJDZ] seawater metagenome; Sea water
10440
10531
+
Ser
GCT
[ENA]
¢þ
>WENV182564872
OJEF01011647
[OJEF] seawater metagenome; Sea water
1062
971
-
Ser
GCT
[ENA]
¢þ
>WENV182565154
OJEH01000010
[OJEH] seawater metagenome; Sea water
11164
11073
-
Ser
GCT
[ENA]
¢þ
>WENV182565862
OJEI01000514
[OJEI] seawater metagenome; Sea water
8732
8823
+
Ser
GCT
[ENA]
¢þ
>WENV182566163
OJEJ01000318
[OJEJ] seawater metagenome; Sea water
11164
11073
-
Ser
GCT
[ENA]
¢þ
>WENV182568291
OJET01000073
[OJET] seawater metagenome; Sea water
9744
9835
+
Ser
GCT
[ENA]
¢þ
>WENV182568744
OJEW01005310
[OJEW] seawater metagenome; Sea water
675
766
+
Ser
GCT
[ENA]
¢þ
>WENV182572522
OJFL01017212
[OJFL] seawater metagenome; Sea water
305
214
-
Ser
GCT
[ENA]
¢þ
>WENV182573397
OJFP01001331
[OJFP] seawater metagenome; Sea water
1299
1390
+
Ser
GCT
[ENA]
¢þ
>WENV182574943
OJFS01010304
[OJFS] seawater metagenome; Sea water
503
412
-
Ser
GCT
[ENA]
¢þ
>WENV182575164
OJFU01000378
[OJFU] seawater metagenome; Sea water
3743
3652
-
Ser
GCT
[ENA]
¢þ
>WENV182576013
OJFX01001409
[OJFX] seawater metagenome; Sea water
503
412
-
Ser
GCT
[ENA]
¢þ
>WENV182576994
OJGC01000215
[OJGC] seawater metagenome; Sea water
11164
11073
-
Ser
GCT
[ENA]
¢þ
>WENV182579681
OJGT01000003
[OJGT] seawater metagenome; Sea water
163321
163230
-
Ser
GCT
[ENA]
¢þ
>WENV182580113
OJGU01004064
[OJGU] seawater metagenome; Sea water
414
323
-
Ser
GCT
[ENA]
¢þ
>WENV182581549
OJGX01012621
[OJGX] seawater metagenome; Sea water
665
756
+
Ser
GCT
[ENA]
¢þ
>WENV182584497
OJHG01000798
[OJHG] seawater metagenome; Sea water
1025
1116
+
Ser
GCT
[ENA]
¢þ
>WENV182585400
OJHH01017349
[OJHH] seawater metagenome; Sea water
291
200
-
Ser
GCT
[ENA]
¢þ
>WENV182586932
OJHK01015552
[OJHK] seawater metagenome; Sea water
248
157
-
Ser
GCT
[ENA]
¢þ
>WENV182587473
OJHM01009578
[OJHM] seawater metagenome; Sea water
641
732
+
Ser
GCT
[ENA]
¢þ
>WENV182588822
OJHY01000181
[OJHY] seawater metagenome; Sea water
11164
11073
-
Ser
GCT
[ENA]
¢þ
>WENV182590619
OJIJ01000425
[OJIJ] seawater metagenome; Sea water
5104
5013
-
Ser
GCT
[ENA]
¢þ
>WENV182591988
OJIO01032428
[OJIO] seawater metagenome; Sea water
556
647
+
Ser
GCT
[ENA]
¢þ
>WENV182592821
OJIR01043446
[OJIR] seawater metagenome; Sea water
217
308
+
Ser
GCT
[ENA]
¢þ
>WENV182594092
OJIV01000342
[OJIV] seawater metagenome; Sea water
8731
8822
+
Ser
GCT
[ENA]
¢þ
>WENV183055498
OLHD01000050
[OLHD] seawater metagenome; Sea water
292
201
-
Ser
GCT
[ENA]
¢þ
>WENV183055669
OLHF01000018
[OLHF] seawater metagenome; Sea water
11909
12000
+
Ser
GCT
[ENA]
¢þ
>WENV183056286
OLHI01004583
[OLHI] seawater metagenome; Sea water
1219
1310
+
Ser
GCT
[ENA]
¢þ
>WENV183058011
OLHN01000624
[OLHN] seawater metagenome; Sea water
8731
8822
+
Ser
GCT
[ENA]
¢þ
>WENV183058397
OLHQ01007946
[OLHQ] seawater metagenome; Sea water
488
579
+
Ser
GCT
[ENA]
¢þ
>WENV183064712
OLII01000091
[OLII] seawater metagenome; Sea water
27786
27877
+
Ser
GCT
[ENA]
¢þ
>WENV183522236
OMOM01001017
[OMOM] seawater metagenome; Sea water
309
218
-
Ser
GCT
[ENA]
¢þ
>WENV183622940
OOFW01057774
[OOFW] marine metagenome; sea ice
118
27
-
Ser
GCT
[ENA]
¢þ
>WENV170704851
LLEN01003846
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
416
325
-
Ser
GCT
[ENA]
¢þ
>WENV170826661
MDSY01114571
[MDSY] marine metagenome; seawater
3941
3850
-
Ser
GCT
[ENA]
¢þ
>C181169945
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
3257495
3257404
-
Ser
GCT
-
¡û
>C191128358
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
3472280
3472189
-
Ser
GCT
-
¡û
>C191130484
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
1570682
1570591
-
Ser
GCT
-
¡û
>W1911770194
QXIO01000001
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
180489
180398
-
Ser
GCT
[ENA]
¡û
>W1710545236
FOBI01000002
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
22818
22727
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK