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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108266 (6 seq.)
>W1711420289
MHTL01000008
Unclassified
Candidatus Vogelbacteria bacterium RIFOXYD1_FULL_51_18 [MHTL]
12631
12715
+
Leu
CAA
[ENA]
¡û
>WENV183675045
ORJL011462516
[ORJL] groundwater metagenome; groundwater
14731
14647
-
Leu
CAA
[ENA]
¡û
>W2010868886
MHLP01000027
Unclassified
Candidatus Lloydbacteria bacterium RIFCSPLOWO2_01_FULL_50_20 [MHLP]
6148
6064
-
Leu
CAA
[ENA]
¡û
>W1511618298
LCQV01000001
Unclassified
Parcubacteria group bacterium GW2011_GWC1_51_35 GW2011_GWC1_51_35 [LCQV]
12415
12499
+
Leu
CAA
[ENA]
¡û
>W1511618366
LCQX01000001
Unclassified
Parcubacteria group bacterium GW2011_GWF2_52_12 GW2011_GWF2_52_12 [LCQX]
53327
53243
-
Leu
CAA
[ENA]
¡û
>W1511618466
LCQZ01000023
Unclassified
Parcubacteria group bacterium GW2011_GWF1_52_5 GW2011_GWF1_52_5 [LCQZ]
6316
6400
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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