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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.1083 (92 seq.)
>C172000040
CP014568
Campylobacterota
Campylobacter fetus subsp. venerealis 01/165 [CP014568]
335836
335929
+
SeC
TCA
-
¡û
>C028553
CP000487
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [CP000487]
335721
335814
+
SeC
TCA
[Ensembl]
¡û
>WENV183613512
OODU01005636
[OODU] human gut metagenome; human gut
3160
3063
-
SeC
TCA
[ENA]
¢þ
>C181148773
CP027287
Campylobacterota
Campylobacter fetus subsp. testudinum 772 [CP027287]
384948
384851
-
SeC
TCA
-
¡û
>C181212912
LS483431
Campylobacterota
Campylobacter fetus subsp. fetus NCTC10842 [LS483431]
337136
337233
+
SeC
TCA
-
¡û
>W09200020
AANR03000001
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [AANR]
335721
335814
+
SeC
TCA
[ENA]
¡û
>W142000029
AJMC01000007
Campylobacterota
Campylobacter fetus subsp. venerealis B6 [AJMC]
16744
16837
+
seC
TCA
[ENA]
¡û
>W142000030
AJSG01000007
Campylobacterota
Campylobacter fetus subsp. venerealis 642-21 [AJSG]
43451
43544
+
seC
TCA
[ENA]
¡û
>C142000013
CP006833
Campylobacterota
Campylobacter fetus subsp. testudinum 03-427 [CP006833]
347120
347213
+
SeC
TCA
-
¡û
>C142000018
CP006999
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/293 [CP006999]
335836
335929
+
SeC
TCA
[Ensembl]
¡û
>W1910574014
JPPC01000002
Campylobacterota
Campylobacter fetus subsp. venerealis TD [JPPC]
161355
161452
+
Sec
TCA
[ENA]
¡û
>W1910574040
JPQC01000002
Campylobacterota
Campylobacter fetus subsp. venerealis 66Y [JPQC]
160807
160904
+
Sec
TCA
[ENA]
¡û
>W1910640541
LSZN01000016
Campylobacterota
Campylobacter fetus subsp. fetus cff110800-21-2 [LSZN]
5876
5779
-
Sec
TCA
[ENA]
¡û
>W1910804275
MTDX01000003
Campylobacterota
Campylobacter fetus 12S01208-4 [MTDX]
160765
160862
+
Sec
TCA
[ENA]
¡û
>W1910804313
MTDY01000003
Campylobacterota
Campylobacter fetus 12S01908-5 [MTDY]
160765
160862
+
Sec
TCA
[ENA]
¡û
>W1810672812
QJTR01000021
Campylobacterota
Campylobacter fetus subsp. fetus HC1 [QJTR]
100616
100519
-
Sec
TCA
[ENA]
¡û
>W1810672853
QJTS01000015
Campylobacterota
Campylobacter fetus subsp. fetus HC2 [QJTS]
160919
161016
+
Sec
TCA
[ENA]
¡û
>C152000062
CP008808
Campylobacterota
Campylobacter fetus subsp. fetus 04/554 [CP008808]
337202
337295
+
SeC
TCA
[Ensembl]
¡û
>C152000063
CP008810
Campylobacterota
Campylobacter fetus subsp. venerealis 97/608 [CP008810]
337811
337904
+
SeC
TCA
[Ensembl]
¡û
>C152000084
CP009226
Campylobacterota
Campylobacter fetus subsp. testudinum pet-3 [CP009226]
347207
347300
+
SeC
TCA
[Ensembl]
¡û
>C152000178
HG004426
Campylobacterota
Campylobacter fetus subsp. venerealis str. 84-112 [HG004426]
432570
432663
+
SeC
TCA
[Ensembl]
¡û
>W11200092
AFGH01000004
Campylobacterota
Campylobacter fetus subsp. venerealis NCTC 10354 [AFGH]
160787
160880
+
seC
TCA
[ENA]
¡û
>C162000017
CP010953
Campylobacterota
Campylobacter fetus subsp. testudinum Sp3 SP3 [CP010953]
358752
358845
+
SeC
TCA
-
¡û
>W1620001006
JYCP01000010
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
86760
86853
+
SeC
TCA
[ENA]
¡û
>W1620001072
LELD01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
147931
148024
+
SeC
TCA
[ENA]
¡û
>W1620001080
LFLJ01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
98649
98556
-
SeC
TCA
[ENA]
¡û
>W1620001081
LFLK01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
99225
99132
-
SeC
TCA
[ENA]
¡û
>W1620001082
LFLL01000019
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
19117
19024
-
SeC
TCA
[ENA]
¡û
>W1620001083
LFLM01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
91089
91182
+
SeC
TCA
[ENA]
¡û
>W1620001084
LFLN01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
46370
46463
+
SeC
TCA
[ENA]
¡û
>W1620001085
LFLO01000016
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
28234
28327
+
SeC
TCA
[ENA]
¡û
>W1620001086
LFLP01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
16188
16281
+
SeC
TCA
[ENA]
¡û
>W1620001087
LFLQ01000005
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
582
675
+
SeC
TCA
[ENA]
¡û
>W1620001088
LFMJ01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
101450
101357
-
SeC
TCA
[ENA]
¡û
>W1620001097
LFXC01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
101044
100951
-
SeC
TCA
[ENA]
¡û
>W1620001098
LFXD01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
100616
100523
-
SeC
TCA
[ENA]
¡û
>W1620001099
LFXE01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
99267
99174
-
SeC
TCA
[ENA]
¡û
>W1620001100
LFXF01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
98318
98225
-
SeC
TCA
[ENA]
¡û
>W1620001101
LFXG01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
65922
65829
-
SeC
TCA
[ENA]
¡û
>W1620001265
LMBE01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
99179
99086
-
SeC
TCA
[ENA]
¡û
>W1620001266
LMBF01000026
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
2623
2530
-
SeC
TCA
[ENA]
¡û
>W1620001267
LMBG01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
3970
4063
+
SeC
TCA
[ENA]
¡û
>W1620001268
LMBH01000022
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
12234
12141
-
SeC
TCA
[ENA]
¡û
>W1620001269
LMBI01000004
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
30501
30408
-
SeC
TCA
[ENA]
¡û
>W1620001592
LRAL01000003
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
97762
97669
-
SeC
TCA
[ENA]
¡û
>W1620001593
LRAM01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
160810
160903
+
SeC
TCA
[ENA]
¡û
>W1620001599
LRER01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
160808
160901
+
SeC
TCA
[ENA]
¡û
>W1620001600
LRES01000003
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
84783
84690
-
SeC
TCA
[ENA]
¡û
>W1620001601
LRET01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
160807
160900
+
SeC
TCA
[ENA]
¡û
>W1620001602
LREU01000007
Campylobacterota
Campylobacter fetus subsp. venerealis CCUG 33872 [LREU]
42839
42932
+
SeC
TCA
[ENA]
¡û
>W1620001603
LREV01000002
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREV]
160814
160907
+
SeC
TCA
[ENA]
¡û
>W1620001604
LREW01000001
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREW]
160803
160896
+
SeC
TCA
[ENA]
¡û
>W1620001605
LREX01000011
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
31404
31311
-
SeC
TCA
[ENA]
¡û
>W1620001606
LREY01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
160808
160901
+
SeC
TCA
[ENA]
¡û
>W1620001607
LREZ01000008
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
42839
42932
+
SeC
TCA
[ENA]
¡û
>W1620001608
LRFA01000005
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
57265
57358
+
SeC
TCA
[ENA]
¡û
>W1620001627
LRVK01000017
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
24917
25010
+
SeC
TCA
[ENA]
¡û
>W1620001628
LRVL01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
154731
154824
+
SeC
TCA
[ENA]
¡û
>W1720001329
JYCP01000010
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
86760
86853
+
SeC
TCA
[ENA]
¡û
>W1720001479
LELD01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
147931
148024
+
SeC
TCA
[ENA]
¡û
>W1720001488
LFLJ01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
98649
98556
-
SeC
TCA
[ENA]
¡û
>W1720001489
LFLK01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
99225
99132
-
SeC
TCA
[ENA]
¡û
>W1720001490
LFLL01000019
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
19117
19024
-
SeC
TCA
[ENA]
¡û
>W1720001491
LFLM01000003
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
91089
91182
+
SeC
TCA
[ENA]
¡û
>W1720001492
LFLN01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
46370
46463
+
SeC
TCA
[ENA]
¡û
>W1720001493
LFLO01000016
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
28234
28327
+
SeC
TCA
[ENA]
¡û
>W1720001494
LFLP01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLP]
16188
16281
+
SeC
TCA
[ENA]
¡û
>W1720001495
LFLQ01000005
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
582
675
+
SeC
TCA
[ENA]
¡û
>W1720001496
LFMJ01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFMJ]
101450
101357
-
SeC
TCA
[ENA]
¡û
>W1720001505
LFXC01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
101044
100951
-
SeC
TCA
[ENA]
¡û
>W1720001506
LFXD01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
100616
100523
-
SeC
TCA
[ENA]
¡û
>W1720001507
LFXE01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
99267
99174
-
SeC
TCA
[ENA]
¡û
>W1720001508
LFXF01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
98318
98225
-
SeC
TCA
[ENA]
¡û
>W1720001509
LFXG01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
65922
65829
-
SeC
TCA
[ENA]
¡û
>W1720001684
LMBE01000002
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
99179
99086
-
SeC
TCA
[ENA]
¡û
>W1720001685
LMBF01000026
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBF]
2623
2530
-
SeC
TCA
[ENA]
¡û
>W1720001686
LMBG01000006
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBG]
3970
4063
+
SeC
TCA
[ENA]
¡û
>W1720001687
LMBH01000022
Campylobacterota
Campylobacter fetus subsp. fetus [LMBH]
12234
12141
-
SeC
TCA
[ENA]
¡û
>W1720001688
LMBI01000004
Campylobacterota
Campylobacter fetus subsp. venerealis [LMBI]
30501
30408
-
SeC
TCA
[ENA]
¡û
>W1720002023
LRAL01000003
Campylobacterota
Campylobacter fetus subsp. fetus BT 10/98 [LRAL]
97762
97669
-
SeC
TCA
[ENA]
¡û
>W1720002024
LRAM01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
160810
160903
+
SeC
TCA
[ENA]
¡û
>W1720002030
LRER01000002
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi97/532 [LRER]
160808
160901
+
SeC
TCA
[ENA]
¡û
>W1720002031
LRES01000003
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
84783
84690
-
SeC
TCA
[ENA]
¡û
>W1720002032
LRET01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
160807
160900
+
SeC
TCA
[ENA]
¡û
>W1720002033
LREX01000011
Campylobacterota
Campylobacter fetus subsp. venerealis [LREX]
31404
31311
-
SeC
TCA
[ENA]
¡û
>W1720002034
LREY01000002
Campylobacterota
Campylobacter fetus subsp. venerealis [LREY]
160808
160901
+
SeC
TCA
[ENA]
¡û
>W1720002035
LREZ01000008
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
42839
42932
+
SeC
TCA
[ENA]
¡û
>W1720002036
LRFA01000005
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
57265
57358
+
SeC
TCA
[ENA]
¡û
>W1720002081
LRVK01000017
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
24917
25010
+
SeC
TCA
[ENA]
¡û
>W1720002082
LRVL01000001
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi92/203 [LRVL]
154731
154824
+
SeC
TCA
[ENA]
¡û
>W1720002911
MKEI01000014
Campylobacterota
Campylobacter fetus subsp. fetus [MKEI]
100646
100739
+
SeC
TCA
[ENA]
¡û
>W132000216
ASTK01000038
Campylobacterota
Campylobacter fetus subsp. venerealis bv. intermedius str. 99541 [ASTK]
43458
43551
+
seC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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