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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108406 (40 seq.)
>W1710785477
LJHX01000007
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
32926
32842
-
Leu
TAG
[ENA]
¡û
>W131058820
ANFY01000005
Alphaproteobacteria
Sandarakinorhabdus sp. AAP62 [ANFY]
75893
75977
+
Leu
TAG
[ENA]
¡û
>W1711502539
MKSU01000015
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
47310
47394
+
Leu
TAG
[ENA]
¡û
>W1711589320
MOEB01000002
Alphaproteobacteria
Aerophototrophica crusticola MIMtkB3 [MOEB]
194173
194257
+
Leu
TAG
[ENA]
¡û
>W1712049890
NFUS01000002
Alphaproteobacteria
Sphingomonas sp. IBVSS1 [NFUS]
521518
521434
-
Leu
TAG
[ENA]
¡û
>WENV180020538
FTCZ01005686
[FTCZ] metagenome; soil
12669
12585
-
Leu
TAG
[ENA]
¡û
>WENV180271463
OBEQ012277603
[OBEQ] groundwater metagenome; groundwater
2769
2852
+
Leu
TAG
[ENA]
¡û
>WENV181311595
OFJB01005205
[OFJB] sludge metagenome; sludge
116
200
+
Leu
TAG
[ENA]
¡û
>WENV181402425
OFTY01001411
[OFTY] sludge metagenome; sludge
7135
7051
-
Leu
TAG
[ENA]
¡û
>WENV183688131
ORMF011240543
[ORMF] groundwater metagenome; groundwater
829
913
+
Leu
TAG
[ENA]
¡û
>WENV170010086
APMI01008101
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1693
1777
+
Leu
TAG
[ENA]
¡û
>WENV170576278
FRDC01000293
[FRDC] freshwater metagenome; water
45221
45305
+
Leu
TAG
[ENA]
¡û
>WENV170576929
FRDC01002279
[FRDC] freshwater metagenome; water
3784
3868
+
Leu
TAG
[ENA]
¡û
>WENV170578084
FSSH01012864
[FSSH] freshwater metagenome; drinking water
1143
1227
+
Leu
TAG
[ENA]
¡û
>C191071866
CP030126
Alphaproteobacteria
Indioceanicola profundi SCSIO 08040 [CP030126]
1479440
1479356
-
Leu
TAG
-
¡û
>W1911139270
NOXT01000110
Alphaproteobacteria
Sandarakinorhabdus sp. TH057 [NOXT]
27733
27649
-
Leu
TAG
[ENA]
¡û
>W1911494770
OBMI01000002
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
605530
605446
-
Leu
TAG
[ENA]
¡û
>W2010669857
JACCAP010000001
Alphaproteobacteria
Sphingomonas sp. R1S6C [JACCAP]
1561147
1561063
-
Leu
TAG
[ENA]
¡û
>W2010731149
JACIIV010000010
Alphaproteobacteria
Polymorphobacter multimanifer DSM 102189 [JACIIV]
126640
126556
-
Leu
TAG
[ENA]
¡û
>W2011014770
NOXT01000110
Alphaproteobacteria
Sandarakinorhabdus sp. TH057 [NOXT]
27733
27649
-
Leu
TAG
[ENA]
¡û
>W2011155674
OBMI01000002
Alphaproteobacteria
Sphingomonas guangdongensis CGMCC 1.12672 [OBMI]
605530
605446
-
Leu
TAG
[ENA]
¡û
>W2011324222
QXDC01000002
Alphaproteobacteria
Hephaestia caeni DSM 25527 [QXDC]
689751
689667
-
Leu
TAG
[ENA]
¡û
>W2012378305
WMHO01000026
Alphaproteobacteria
Sandarakinorhabdus sp. MO-4 [WMHO]
7816
7900
+
Leu
TAG
[ENA]
¡û
>W2110026358
BMIH01000003
Alphaproteobacteria
Sphingomonas metalli CGMCC 1.15330 [BMIH]
582255
582171
-
Leu
TAG
[ENA]
¡û
>W2110034630
BMOX01000059
Alphaproteobacteria
Polymorphobacter multimanifer JCM 18140 [BMOX]
3918
3834
-
Leu
TAG
[ENA]
¡û
>W2110425648
JAELTW010000113
Alphaproteobacteria
Sphingomonas sp. ASV18 [JAELTW]
4226
4310
+
Leu
TAG
[ENA]
¡û
>W2110453981
JAETGP010000004
Alphaproteobacteria
Skermanella mucosa KEMB 2255-438 [JAETGP]
266831
266747
-
Leu
TAG
[ENA]
¡û
>W2110455670
JAEUWT010000012
Alphaproteobacteria
Skermanella rosea KEMB 2255-458 [JAEUWT]
89377
89293
-
Leu
TAG
[ENA]
¡û
>W2110503585
JAFIQV010000011
Alphaproteobacteria
Azospirillum sp. SYSU D00513 [JAFIQV]
133684
133600
-
Leu
TAG
[ENA]
¡û
>C201252983
CP051775
Alphaproteobacteria
Rhodospirillaceae bacterium B3 [CP051775]
1268463
1268547
+
Leu
TAG
-
¡û
>C211239229
CP067420
Alphaproteobacteria
Skermanella sp. TT6 [CP067420]
2854041
2853957
-
Leu
TAG
-
¡û
>C231201354
CP084930
Alphaproteobacteria
Sphingomonas morindae NBD5 [CP084930, CP084931]
345806
345722
-
Leu
TAG
-
¡û
>C231221427
CP086106
Alphaproteobacteria
Skermanella mucosa KEMB 2255-438 [CP086106]
3189947
3189863
-
Leu
TAG
-
¡û
>C231221460
CP086111
Alphaproteobacteria
Skermanella rosea KEMB 2255-458 [CP086111]
2314051
2314135
+
Leu
TAG
-
¡û
>C241001602
AP019701
Alphaproteobacteria
Stella sp. ATCC 35155 [AP019701]
2618807
2618723
-
Leu
TAG
-
¡û
>C241034283
CP030265
Alphaproteobacteria
Skermanella pratensis W17 [CP030265]
3072381
3072297
-
Leu
TAG
-
¡û
>C241141783
CP050137
Alphaproteobacteria
Sphingomonas sp. CL5.1 [CP050137]
4015229
4015145
-
Leu
TAG
-
¡û
>C241179783
CP059851
Alphaproteobacteria
Sandaracinobacteroides saxicola M6 [CP059851]
208509
208425
-
Leu
TAG
-
¡û
>W1610649283
LJHX01000007
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
32926
32842
-
Leu
TAG
[ENA]
¡û
>W1710535996
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
5062100
5062016
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK