This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108473 (91 seq.)
>W1710921014
LNZC01000027
Gammaproteobacteria
Legionella worsleiensis [LNZC]
109097
109013
-
Leu
TAG
[ENA]
¡û
>W131227534
AUFF01000004
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
28880
28796
-
Leu
TAG
[ENA]
¡û
>W131230562
AUHS01000008
Gammaproteobacteria
Legionella moravica DSM 19234 [AUHS]
199136
199052
-
Leu
TAG
[ENA]
¡û
>WENV180697700
ODDE01003152
[ODDE] human metagenome; G_DNA_Supragingival plaque
1474
1390
-
Leu
TAG
[ENA]
¡û
>WENV180721866
ODGL01020556
[ODGL] human metagenome; G_DNA_Subgingival plaque
465
549
+
Leu
TAG
[ENA]
¡û
>WENV180727563
ODGU01007813
[ODGU] human metagenome; G_DNA_Supragingival plaque
3462
3546
+
Leu
TAG
[ENA]
¡û
>WENV180732723
ODGY01002945
[ODGY] human metagenome; G_DNA_Supragingival plaque
2982
2898
-
Leu
TAG
[ENA]
¡û
>WENV180734195
ODGZ01003703
[ODGZ] human metagenome; G_DNA_Supragingival plaque
5327
5411
+
Leu
TAG
[ENA]
¡û
>WENV180736060
ODHB01004118
[ODHB] human metagenome; G_DNA_Supragingival plaque
640
556
-
Leu
TAG
[ENA]
¡û
>WENV180738818
ODHD01000619
[ODHD] human metagenome; G_DNA_Supragingival plaque
11272
11188
-
Leu
TAG
[ENA]
¡û
>WENV180750423
ODHS01002104
[ODHS] human metagenome; G_DNA_Supragingival plaque
2989
3073
+
Leu
TAG
[ENA]
¡û
>WENV180755220
ODHU01042400
[ODHU] human metagenome; G_DNA_Supragingival plaque
222
306
+
Leu
TAG
[ENA]
¡û
>WENV180765254
ODIB01055785
[ODIB] human metagenome; G_DNA_Supragingival plaque
13
97
+
Leu
TAG
[ENA]
¡û
>WENV180777479
ODIL01009870
[ODIL] human metagenome; G_DNA_Supragingival plaque
410
494
+
Leu
TAG
[ENA]
¡û
>WENV180778144
ODIM01000869
[ODIM] human metagenome; G_DNA_Supragingival plaque
2905
2989
+
Leu
TAG
[ENA]
¡û
>WENV180798268
ODJB01396054
[ODJB] human metagenome; G_DNA_Supragingival plaque
125
41
-
Leu
TAG
[ENA]
¡û
>WENV180801374
ODJD01024894
[ODJD] human metagenome; G_DNA_Supragingival plaque
482
566
+
Leu
TAG
[ENA]
¡û
>WENV180804195
ODJG01001036
[ODJG] human metagenome; G_DNA_Supragingival plaque
5130
5214
+
Leu
TAG
[ENA]
¡û
>WENV180809197
ODJK01007000
[ODJK] human metagenome; G_DNA_Subgingival plaque
635
551
-
Leu
TAG
[ENA]
¡û
>WENV180813571
ODJO01001201
[ODJO] human metagenome; G_DNA_Supragingival plaque
5130
5214
+
Leu
TAG
[ENA]
¡û
>WENV180832330
ODKC01001127
[ODKC] human metagenome; G_DNA_Supragingival plaque
11501
11417
-
Leu
TAG
[ENA]
¡û
>WENV180834075
ODKD01002450
[ODKD] human metagenome; G_DNA_Supragingival plaque
2824
2740
-
Leu
TAG
[ENA]
¡û
>WENV180836213
ODKE01066113
[ODKE] human metagenome; G_DNA_Supragingival plaque
178
262
+
Leu
TAG
[ENA]
¡û
>WENV180844183
ODKN01045615
[ODKN] human metagenome; G_DNA_Supragingival plaque
700
784
+
Leu
TAG
[ENA]
¡û
>WENV180845563
ODKT01000858
[ODKT] human metagenome; G_DNA_Supragingival plaque
1207
1123
-
Leu
TAG
[ENA]
¡û
>WENV180888670
ODMN01002379
[ODMN] human metagenome; G_DNA_Supragingival plaque
686
770
+
Leu
TAG
[ENA]
¡û
>WENV180922482
ODTJ01004660
[ODTJ] human metagenome; G_DNA_Supragingival plaque
964
880
-
Leu
TAG
[ENA]
¡û
>WENV180924329
ODTK01003400
[ODTK] human metagenome; G_DNA_Supragingival plaque
5876
5792
-
Leu
TAG
[ENA]
¡û
>WENV180924647
ODTK01010219
[ODTK] human metagenome; G_DNA_Supragingival plaque
657
741
+
Leu
TAG
[ENA]
¡û
>WENV180927737
ODTM01003054
[ODTM] human metagenome; G_DNA_Supragingival plaque
4156
4240
+
Leu
TAG
[ENA]
¡û
>WENV180933768
ODTR01002261
[ODTR] human metagenome; G_DNA_Supragingival plaque
4677
4761
+
Leu
TAG
[ENA]
¡û
>WENV180934738
ODTS01001981
[ODTS] human metagenome; G_DNA_Subgingival plaque
2015
1931
-
Leu
TAG
[ENA]
¡û
>WENV180938510
ODTX01002554
[ODTX] human metagenome; G_DNA_Supragingival plaque
1846
1762
-
Leu
TAG
[ENA]
¡û
>WENV180944299
ODUC01012789
[ODUC] human metagenome; G_DNA_Supragingival plaque
3141
3225
+
Leu
TAG
[ENA]
¡û
>WENV180958441
ODUL01004879
[ODUL] human metagenome; G_DNA_Supragingival plaque
2356
2440
+
Leu
TAG
[ENA]
¡û
>WENV180964389
ODUO01001871
[ODUO] human metagenome; G_DNA_Supragingival plaque
2761
2845
+
Leu
TAG
[ENA]
¡û
>WENV180972935
ODUW01000537
[ODUW] human metagenome; G_DNA_Supragingival plaque
2322
2238
-
Leu
TAG
[ENA]
¡û
>WENV180976873
ODUY01310713
[ODUY] human metagenome; G_DNA_Supragingival plaque
121
205
+
Leu
TAG
[ENA]
¡û
>WENV180980946
ODVE01004057
[ODVE] human metagenome; G_DNA_Supragingival plaque
2119
2035
-
Leu
TAG
[ENA]
¡û
>WENV180983393
ODVF01010134
[ODVF] human metagenome; G_DNA_Supragingival plaque
561
477
-
Leu
TAG
[ENA]
¡û
>WENV180983766
ODVF01036177
[ODVF] human metagenome; G_DNA_Supragingival plaque
439
355
-
Leu
TAG
[ENA]
¡û
>WENV180987159
ODVK01006308
[ODVK] human metagenome; G_DNA_Supragingival plaque
958
874
-
Leu
TAG
[ENA]
¡û
>WENV181002694
ODVX01001239
[ODVX] human metagenome; G_DNA_Supragingival plaque
12514
12430
-
Leu
TAG
[ENA]
¡û
>WENV181008574
ODWE01007757
[ODWE] human metagenome; G_DNA_Supragingival plaque
1530
1446
-
Leu
TAG
[ENA]
¡û
>WENV181019254
ODWU01001404
[ODWU] human metagenome; G_DNA_Supragingival plaque
9061
8977
-
Leu
TAG
[ENA]
¡û
>WENV181043206
ODXU01072873
[ODXU] human metagenome; G_DNA_Buccal mucosa
128
44
-
Leu
TAG
[ENA]
¡û
>WENV181049775
ODYD01002088
[ODYD] human metagenome; G_DNA_Supragingival plaque
2937
2853
-
Leu
TAG
[ENA]
¡û
>WENV181050355
ODYD01014683
[ODYD] human metagenome; G_DNA_Supragingival plaque
1456
1540
+
Leu
TAG
[ENA]
¡û
>WENV181063272
ODYP01000314
[ODYP] human metagenome; G_DNA_Supragingival plaque
5447
5531
+
Leu
TAG
[ENA]
¡û
>WENV181067120
ODZI01007079
[ODZI] human metagenome; G_DNA_Supragingival plaque
1717
1801
+
Leu
TAG
[ENA]
¡û
>WENV181070298
OEAE01000657
[OEAE] human metagenome; G_DNA_Supragingival plaque
1869
1785
-
Leu
TAG
[ENA]
¡û
>WENV181076452
OEAP01005587
[OEAP] human metagenome; G_DNA_Supragingival plaque
5477
5393
-
Leu
TAG
[ENA]
¡û
>WENV181079477
OEAS01007240
[OEAS] human metagenome; G_DNA_Supragingival plaque
3348
3432
+
Leu
TAG
[ENA]
¡û
>WENV181079791
OEAS01014912
[OEAS] human metagenome; G_DNA_Supragingival plaque
823
907
+
Leu
TAG
[ENA]
¡û
>WENV181082964
OEAV01001457
[OEAV] human metagenome; G_DNA_Supragingival plaque
1785
1701
-
Leu
TAG
[ENA]
¡û
>WENV181090660
OEBC01002133
[OEBC] human metagenome; G_DNA_Supragingival plaque
2927
3011
+
Leu
TAG
[ENA]
¡û
>WENV181107534
OEEI01010750
[OEEI] human metagenome; G_DNA_Supragingival plaque
1416
1500
+
Leu
TAG
[ENA]
¡û
>WENV181107653
OEEI01015228
[OEEI] human metagenome; G_DNA_Supragingival plaque
1478
1394
-
Leu
TAG
[ENA]
¡û
>WENV181121085
OEFL01000415
[OEFL] human metagenome; G_DNA_Supragingival plaque
15382
15298
-
Leu
TAG
[ENA]
¡û
>WENV181136924
OEGI01142961
[OEGI] human metagenome; G_DNA_Supragingival plaque
198
114
-
Leu
TAG
[ENA]
¡û
>WENV181143509
OEHM01001556
[OEHM] human metagenome; G_DNA_Supragingival plaque
4800
4716
-
Leu
TAG
[ENA]
¡û
>WENV181146281
OEHQ01002674
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5121
5205
+
Leu
TAG
[ENA]
¡û
>WENV181152357
OEIA01001019
[OEIA] human metagenome; G_DNA_Supragingival plaque
10792
10708
-
Leu
TAG
[ENA]
¡û
>WENV181156117
OEIE01003594
[OEIE] human metagenome; G_DNA_Supragingival plaque
2496
2580
+
Leu
TAG
[ENA]
¡û
>WENV181158556
OEIH01002912
[OEIH] human metagenome; G_DNA_Supragingival plaque
2122
2038
-
Leu
TAG
[ENA]
¡û
>WENV181177696
OEJS01010863
[OEJS] human metagenome; G_DNA_Supragingival plaque
685
601
-
Leu
TAG
[ENA]
¡û
>WENV181179188
OEJT01001829
[OEJT] human metagenome; G_DNA_Supragingival plaque
7299
7215
-
Leu
TAG
[ENA]
¡û
>WENV181180915
OEJU01001880
[OEJU] human metagenome; G_DNA_Supragingival plaque
5879
5795
-
Leu
TAG
[ENA]
¡û
>WENV181181869
OEJV01000498
[OEJV] human metagenome; G_DNA_Supragingival plaque
15365
15281
-
Leu
TAG
[ENA]
¡û
>WENV183509303
OMHH01007011
[OMHH] human oral metagenome; human oral
195
279
+
Leu
TAG
[ENA]
¡û
>WENV183510541
OMHO01010943
[OMHO] human oral metagenome; human oral
463
379
-
Leu
TAG
[ENA]
¡û
>WENV183692764
ORMF011971322
[ORMF] groundwater metagenome; groundwater
219
136
-
Leu
TAG
[ENA]
¡û
>WENV183712568
PDWI01105251
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
57
141
+
Leu
TAG
[ENA]
¡û
>WENV170229432
CEQG01117911
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
863
779
-
Leu
TAG
[ENA]
¡û
>C191004442
AP018724
Gammaproteobacteria
Sulfurivermis fontis JG42 [AP018724]
1709335
1709251
-
Leu
TAG
-
¡û
>C191209060
LR134365
Gammaproteobacteria
Cardiobacterium hominis NCTC10426 [LR134365]
1417061
1416977
-
Leu
TAG
-
¡û
>W09127383
ACKY01000031
Gammaproteobacteria
Cardiobacterium hominis ATCC 15826 [ACKY]
18148
18064
-
Leu
TAG
[ENA]
¡û
>W2010147880
CAAAIS010000013
Gammaproteobacteria
Legionella wadsworthii 81-716 [CAAAIS]
58561
58645
+
Leu
TAG
[ENA]
¡û
>W2010881388
MJEV01000073
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MJEV]
23134
23050
-
Leu
TAG
[ENA]
¡û
>W2011829764
UGPA01000001
Gammaproteobacteria
Legionella worsleiensis NCTC12377 [UGPA]
359194
359110
-
Leu
TAG
[ENA]
¡û
>W2011844458
UHIA01000004
Gammaproteobacteria
Suttonella indologenes NCTC10717 [UHIA]
562272
562188
-
Leu
TAG
[ENA]
¡û
>ENV09003321
ADGO01019824
Compost metagenome contig00001
152
68
-
Leu
TAG
[ENA]
¡û
>W2110394318
JADWVM010000007
Gammaproteobacteria
Legionella sp. 30fs61 [JADWVM]
70343
70259
-
Leu
TAG
[ENA]
¡û
>C231569383
CP115811
Gammaproteobacteria
Marinobacter alkaliphilus JY28 [CP115811]
1791677
1791761
+
Leu
TAG
-
¡û
>C241006907
AP022839
Gammaproteobacteria
Legionella antarctica TUM19329 [AP022839]
2689355
2689271
-
Leu
TAG
-
¡û
>C241013075
AP028062
Gammaproteobacteria
Marinobacter shengliensis D49 [AP028062]
1746982
1747066
+
Leu
TAG
-
¡û
>C241095552
CP045367
Gammaproteobacteria
Marinobacter sp. THAF39 [CP045367]
1648555
1648639
+
Leu
TAG
-
¡û
>W1511448637
JVAB01000060
Gammaproteobacteria
Cardiobacterium hominis 612_ETAR [JVAB]
20082
20166
+
Leu
TAG
[ENA]
¡û
>W1511449098
JVAQ01000035
Gammaproteobacteria
Cardiobacterium hominis 599_SSED [JVAQ]
34830
34914
+
Leu
TAG
[ENA]
¡û
>W1511449160
JVAR01000055
Gammaproteobacteria
Cardiobacterium hominis 598_FBAL [JVAR]
34833
34917
+
Leu
TAG
[ENA]
¡û
>W1610462089
FKLO01000050
Gammaproteobacteria
Cardiobacterium hominis CHUV0807 [FKLO]
62263
62179
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK