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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108554 (71 seq.)
>W1710925553
LODJ01000003
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [LODJ]
201720
201636
-
Leu
GAG
[ENA]
¡û
>W1710925637
LODK01000027
Gammaproteobacteria
Pseudoalteromonas sp. H100 [LODK]
200971
200887
-
Leu
GAG
[ENA]
¡û
>W131051915
AMYA01000032
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 [AMYA]
31372
31288
-
Leu
GAG
[ENA]
¡û
>w021541
AAVS01000023
Gammaproteobacteria
Alteromonadales bacterium TW-7 [AAVS]
29881
29795
-
Leu
GAG
[ENA]
¡û
>W141236609
BBIN01000140
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 412' [BBIN]
101624
101708
+
Leu
GAG
[ENA]
¡û
>WENV182542494
OJAY01004412
[OJAY] seawater metagenome; Sea water
350
434
+
Leu
GAG
[ENA]
¡û
>WENV182542642
OJAZ01000209
[OJAZ] seawater metagenome; Sea water
23114
23198
+
Leu
GAG
[ENA]
¡û
>WENV182543672
OJBC01000185
[OJBC] seawater metagenome; Sea water
29693
29777
+
Leu
GAG
[ENA]
¡û
>WENV182544699
OJBJ01000030
[OJBJ] seawater metagenome; Sea water
39328
39412
+
Leu
GAG
[ENA]
¡û
>WENV182547243
OJBS01000015
[OJBS] seawater metagenome; Sea water
38140
38224
+
Leu
GAG
[ENA]
¡û
>WENV182552451
OJCK01000155
[OJCK] seawater metagenome; Sea water
23707
23791
+
Leu
GAG
[ENA]
¡û
>WENV182557568
OJDK01000332
[OJDK] seawater metagenome; Sea water
21645
21729
+
Leu
GAG
[ENA]
¡û
>WENV182557827
OJDL01000079
[OJDL] seawater metagenome; Sea water
34219
34303
+
Leu
GAG
[ENA]
¡û
>WENV182558713
OJDN01001216
[OJDN] seawater metagenome; Sea water
3787
3703
-
Leu
GAG
[ENA]
¡û
>WENV182559063
OJDO01000335
[OJDO] seawater metagenome; Sea water
11117
11033
-
Leu
GAG
[ENA]
¡û
>WENV182559804
OJDQ01005558
[OJDQ] seawater metagenome; Sea water
1336
1420
+
Leu
GAG
[ENA]
¡û
>WENV182562442
OJDZ01003195
[OJDZ] seawater metagenome; Sea water
2428
2512
+
Leu
GAG
[ENA]
¡û
>WENV182564954
OJEF01019858
[OJEF] seawater metagenome; Sea water
560
644
+
Leu
GAG
[ENA]
¡û
>WENV182565789
OJEH01048256
[OJEH] seawater metagenome; Sea water
496
580
+
Leu
GAG
[ENA]
¡û
>WENV182565893
OJEI01000875
[OJEI] seawater metagenome; Sea water
1582
1498
-
Leu
GAG
[ENA]
¡û
>WENV182566126
OJEJ01000110
[OJEJ] seawater metagenome; Sea water
38140
38224
+
Leu
GAG
[ENA]
¡û
>WENV182567661
OJEP01000020
[OJEP] seawater metagenome; Sea water
38140
38224
+
Leu
GAG
[ENA]
¡û
>WENV182568643
OJEW01000076
[OJEW] seawater metagenome; Sea water
38140
38224
+
Leu
GAG
[ENA]
¡û
>WENV182575167
OJFU01000403
[OJFU] seawater metagenome; Sea water
1903
1987
+
Leu
GAG
[ENA]
¡û
>WENV182576966
OJGC01000031
[OJGC] seawater metagenome; Sea water
35378
35462
+
Leu
GAG
[ENA]
¡û
>WENV182585435
OJHH01022759
[OJHH] seawater metagenome; Sea water
522
438
-
Leu
GAG
[ENA]
¡û
>WENV182587949
OJHO01000267
[OJHO] seawater metagenome; Sea water
14308
14392
+
Leu
GAG
[ENA]
¡û
>WENV182588800
OJHY01000056
[OJHY] seawater metagenome; Sea water
10925
10841
-
Leu
GAG
[ENA]
¡û
>WENV182590804
OJIK01000737
[OJIK] seawater metagenome; Sea water
2735
2819
+
Leu
GAG
[ENA]
¡û
>WENV182594348
OJIV01004732
[OJIV] seawater metagenome; Sea water
166
82
-
Leu
GAG
[ENA]
¡û
>WENV183056780
OLHJ01016577
[OLHJ] seawater metagenome; Sea water
1067
983
-
Leu
GAG
[ENA]
¡û
>WENV183057950
OLHN01000055
[OLHN] seawater metagenome; Sea water
11117
11033
-
Leu
GAG
[ENA]
¡û
>WENV183061471
OLHZ01016514
[OLHZ] seawater metagenome; Sea water
452
536
+
Leu
GAG
[ENA]
¡û
>WENV170263347
CERC01037558
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
165
249
+
Leu
GAG
[ENA]
¡û
>WENV170266053
CERE01035589
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
203
119
-
Leu
GAG
[ENA]
¡û
>C181012540
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
1085451
1085535
+
Leu
GAG
-
¡û
>C181036700
CP019162
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [CP019162, CP019163]
1458588
1458504
-
Leu
GAG
-
¡û
>C181084455
CP023558
Gammaproteobacteria
Pseudoalteromonas marina ECSMB14103 [CP023558]
1048814
1048898
+
Leu
GAG
-
¡û
>W141621790
JJNY01000055
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
8388
8304
-
Leu
GAG
[ENA]
¡û
>W141621849
JJNZ01000008
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
173269
173185
-
Leu
GAG
[ENA]
¡û
>W2011200930
PNCW01000073
Gammaproteobacteria
Pseudoalteromonas sp. S3178 [PNCW]
6704
6788
+
Leu
GAG
[ENA]
¡û
>W2011201651
PNDJ01000051
Gammaproteobacteria
Pseudoalteromonas sp. S1609 [PNDJ]
41420
41336
-
Leu
GAG
[ENA]
¡û
>W2011202369
PNDV01000026
Gammaproteobacteria
Pseudoalteromonas sp. S554 [PNDV]
10826
10742
-
Leu
GAG
[ENA]
¡û
>W2011202470
PNDW01000014
Gammaproteobacteria
Pseudoalteromonas sp. S410 [PNDW]
285054
285138
+
Leu
GAG
[ENA]
¡û
>W2011202502
PNDX01000003
Gammaproteobacteria
Pseudoalteromonas sp. S409 [PNDX]
10723
10639
-
Leu
GAG
[ENA]
¡û
>W2011202604
PNDY01000013
Gammaproteobacteria
Pseudoalteromonas sp. S408 [PNDY]
10799
10715
-
Leu
GAG
[ENA]
¡û
>W2011202686
PNDZ01000011
Gammaproteobacteria
Pseudoalteromonas sp. S407 [PNDZ]
10799
10715
-
Leu
GAG
[ENA]
¡û
>W2011202742
PNEA01000008
Gammaproteobacteria
Pseudoalteromonas sp. S186 [PNEA]
169129
169213
+
Leu
GAG
[ENA]
¡û
>W2011202807
PNEB01000011
Gammaproteobacteria
Pseudoalteromonas sp. S185 [PNEB]
10738
10654
-
Leu
GAG
[ENA]
¡û
>W2011557508
SEUJ01000073
Gammaproteobacteria
Pseudoalteromonas fuliginea PS47 [SEUJ]
90244
90328
+
Leu
GAG
[ENA]
¡û
>W2011557596
SEUK01000049
Gammaproteobacteria
Pseudoalteromonas fuliginea PS42 [SEUK]
5127
5043
-
Leu
GAG
[ENA]
¡û
>W2011557707
SEUL01000070
Gammaproteobacteria
Pseudoalteromonas fuliginea PS2 [SEUL]
90241
90325
+
Leu
GAG
[ENA]
¡û
>W2012434838
WTKX01000046
Gammaproteobacteria
Pseudoalteromonas sp. Z1A2 [WTKX]
2478
2394
-
Leu
GAG
[ENA]
¡û
>W2012435069
WTLA01000006
Gammaproteobacteria
Pseudoalteromonas sp. Z9A4 [WTLA]
110779
110863
+
Leu
GAG
[ENA]
¡û
>W2110399110
JADYXJ010000010
Gammaproteobacteria
Pseudoalteromonas sp. SWXJ133 [JADYXJ]
110861
110945
+
Leu
GAG
[ENA]
¡û
>W2110557375
JAGJEJ010000001
Gammaproteobacteria
Pseudoalteromonas sp. MMG006 [JAGJEJ]
446377
446461
+
Leu
GAG
[ENA]
¡û
>W2110612185
JAHKQC010000040
Gammaproteobacteria
Pseudoalteromonas sp. C2R02 [JAHKQC]
49732
49648
-
Leu
GAG
[ENA]
¡û
>C211006564
AP022624
Gammaproteobacteria
Pseudoalteromonas sp. PS1M3 [AP022624, AP022625]
989253
989337
+
Leu
GAG
-
¡û
>W1510021499
BBZB01000001
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 423' [BBZB]
1513989
1514073
+
Leu
GAG
[ENA]
¡û
>C231320507
CP092598
Gammaproteobacteria
Pseudoalteromonas sp. H100 [CP092598, CP092599]
2046749
2046665
-
Leu
GAG
-
¡û
>C231343873
CP094441
Gammaproteobacteria
Pseudoalteromonas sp. APM04 [CP094441, CP094442]
2423229
2423145
-
Leu
GAG
-
¡û
>W1511478100
JWGY01000017
Gammaproteobacteria
Pseudoalteromonas sp. ECSMB14103 [JWGY]
38230
38314
+
Leu
GAG
[ENA]
¡û
>W1511518615
JXYD01000055
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
27538
27622
+
Leu
GAG
[ENA]
¡û
>C161051994
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
2965093
2965009
-
Leu
GAG
-
¡û
>W121123365
BADY01000084
Gammaproteobacteria
Pseudoalteromonas sp. BSi20495 [BADY]
1938
1854
-
Leu
GAG
[ENA]
¡û
>W121025088
AHCB01000007
Gammaproteobacteria
Pseudoalteromonas marina mano4 [AHCB]
202051
201967
-
Leu
GAG
[ENA]
¡û
>W121123297
BADX01000097
Gammaproteobacteria
Pseudoalteromonas sp. BSi20480 [BADX]
10876
10792
-
Leu
GAG
[ENA]
¡û
>W1610783199
LODJ01000003
Gammaproteobacteria
Pseudoalteromonas sp. 13-15 [LODJ]
201720
201636
-
Leu
GAG
[ENA]
¡û
>W1610783283
LODK01000027
Gammaproteobacteria
Pseudoalteromonas sp. H100 [LODK]
200971
200887
-
Leu
GAG
[ENA]
¡û
>W1710558056
FOLO01000002
Gammaproteobacteria
Pseudoalteromonas denitrificans DSM 6059 [FOLO]
209733
209817
+
Leu
GAG
[ENA]
¡û
>W1710594374
FSRF01000001
Gammaproteobacteria
Pseudoalteromonas marina 13-15 [FSRF]
1458588
1458504
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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