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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108626 (16 seq.)
>W131066928
ANPJ01000007
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
190827
190742
-
Leu
GAG
[ENA]
¡û
>C171092368
CP019342
Bacteroidota
Nonlabens tegetincola NBRC 100970 [CP019342]
1364847
1364930
+
Leu
GAG
-
¡û
>w013053
AAMZ01000008
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
142261
142174
-
Leu
GAG
[ENA]
¡û
>W141238827
BBML01000006
Bacteroidota
Nonlabens tegetincola sediminis [BBML]
182360
182443
+
Leu
GAG
[ENA]
¡û
>WENV182546552
OJBP01000157
[OJBP] seawater metagenome; Sea water
40837
40920
+
Leu
GAG
[ENA]
¢þ
>WENV170130969
CENR01073439
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
117
202
+
Leu
GAG
[ENA]
¢þ
>WENV170290228
CERZ01031612
[CERZ] marine metagenome genome assembly TARA_082_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
148
233
+
Leu
GAG
[ENA]
¢þ
>WENV170665242
JYMV01023942
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
19484
19569
+
Leu
GAG
[ENA]
¢þ
>C181175175
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
460417
460500
+
Leu
GAG
-
¡û
>W1910785681
MQVV01000016
Bacteroidota
Nonlabens tegetincola JCM 12886 [MQVV]
350891
350974
+
Leu
GAG
[ENA]
¡û
>W1810784271
QRAO01000004
Bacteroidota
Marinirhabdus gelatinilytica DSM 101478 [QRAO]
218089
218004
-
Leu
GAG
[ENA]
¡û
>C151048581
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
2903636
2903551
-
Leu
GAG
[Ensembl]
¡û
>C11111622
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
2205350
2205265
-
Leu
GAG
[Ensembl]
¡û
>W1511360741
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
2819025
2818940
-
Leu
GAG
[ENA]
¡û
>C161034415
CP011373
Bacteroidota
Nonlabens sp. MIC269 [CP011373]
2713935
2713852
-
Leu
GAG
[Ensembl]
¡û
>C161083539
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
1585346
1585261
-
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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