This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108760 (30 seq.)
>W131177999
ARLF01000001
Gammaproteobacteria
Thiomicrorhabdus arctica DSM 13458 [ARLF]
1571816
1571732
-
Tyr
GTA
[ENA]
¡û
>W131186708
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
1112766
1112682
-
Tyr
GTA
[ENA]
¡û
>W141170930
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
1394788
1394704
-
Tyr
GTA
[ENA]
¡û
>W141279815
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
277785
277869
+
Tyr
GTA
[ENA]
¡û
>WENV183624274
OOGD01000113
[OOGD] marine metagenome; sea ice
8994
8910
-
Tyr
GTA
[ENA]
¡û
>WENV183628560
OOGO01001157
[OOGO] marine metagenome; sea ice
3016
2932
-
Tyr
GTA
[ENA]
¡û
>WENV170602706
FUWD010255976
[FUWD] metagenome; unknown
720
636
-
Tyr
GTA
[ENA]
¡û
>C191004363
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
341027
341111
+
Tyr
GTA
-
¡û
>C191098432
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
435421
435505
+
Tyr
GTA
-
¡û
>C191180137
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
343791
343875
+
Tyr
GTA
-
¡û
>W141733774
JNLD01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
273477
273561
+
Tyr
GTA
[ENA]
¡û
>W141776992
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
1490899
1490815
-
Tyr
GTA
[ENA]
¡û
>W141777032
JOMR01000001
Gammaproteobacteria
Thiomicrospira pelophila DSM 1534 [JOMR]
2024741
2024657
-
Tyr
GTA
[ENA]
¡û
>W141820248
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
232780
232864
+
Tyr
GTA
[ENA]
¡û
>C151016198
CP007030
Gammaproteobacteria
Thiomicrospira aerophila AL3 [CP007030]
149437
149521
+
Tyr
GTA
[Ensembl]
¡û
>W2010663060
JACBGH010000003
Gammaproteobacteria
Thiomicrorhabdus sp. HH3 [JACBGH]
209170
209254
+
Tyr
GTA
[ENA]
¡û
>W2010663094
JACBGI010000010
Gammaproteobacteria
Thiomicrorhabdus sp. HH1 [JACBGI]
482
398
-
Tyr
GTA
[ENA]
¡û
>W2012228300
WBJR01000005
Gammaproteobacteria
Hydrogenovibrio sp. JE_KL2 [WBJR]
251043
251127
+
Tyr
GTA
[ENA]
¡û
>ENV09001805
ACQI01008886
Hydrothermal vent metagenome LCHCB.C1
303
219
-
Tyr
GTA
[ENA]
¡û
>W2110531998
JAGETW010000010
Gammaproteobacteria
Thiomicrorhabdus sp. 6S3-12 [JAGETW]
78861
78945
+
Tyr
GTA
[ENA]
¡û
>C201006183
AP020335
Gammaproteobacteria
Hydrogenovibrio marinus MH-110 [AP020335]
360644
360728
+
Tyr
GTA
-
¡û
>C231004105
AP024202
Gammaproteobacteria
Thiomicrorhabdus immobilis Am19 [AP024202]
411630
411714
+
Tyr
GTA
-
¡û
>C231120455
CP070959
Gammaproteobacteria
Thiomicrospira microaerophila BDL05 [CP070959]
2095339
2095255
-
Tyr
GTA
-
¡û
>C231452538
CP102381
Gammaproteobacteria
Thiomicrorhabdus sp. XGS-01 [CP102381]
405760
405844
+
Tyr
GTA
-
¡û
>C241004883
AP021889
Gammaproteobacteria
Thiosulfatimonas sediminis aks77 [AP021889]
2420321
2420237
-
Tyr
GTA
-
¡û
>C241165244
CP054020
Gammaproteobacteria
Thiomicrorhabdus xiamenensis G2 [CP054020]
417235
417319
+
Tyr
GTA
-
¡û
>C11122510
CP002776
Gammaproteobacteria
Thiomicrospira cyclica ALM1 [CP002776]
113934
114018
+
Tyr
GTA
[Ensembl]
¡û
>W11178519
AGFA01000002
Gammaproteobacteria
Thiomicrospira aerophila AL3 [AGFA]
231058
230974
-
Tyr
GTA
[ENA]
¡û
>W1710575193
FOYY01000006
Gammaproteobacteria
Thiomicrospira sp. ALE5 ALE5 [FOYY]
105893
105977
+
Tyr
GTA
[ENA]
¡û
>W1710594286
FSRE01000001
Gammaproteobacteria
Sulfurivirga caldicuralii [FSRE]
226842
226926
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK