This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108835 (19 seq.)
>W131184751
ARTD01000005
Bacteroidota
Flavobacterium sp. SCGC AAA160-P02 [ARTD]
43594
43676
+
Leu
CAA
[ENA]
¡û
>C171074054
CP018153
Bacteroidota
Christiangramia salexigens LPB0144 [CP018153]
2126745
2126663
-
Leu
CAA
-
¡û
>WENV180375658
OBOL01041247
[OBOL] marine metagenome; Surface water
468
386
-
Leu
CAA
[ENA]
¡û
>WENV170412346
CEUK01024508
[CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
55266
55182
-
Leu
CAA
[ENA]
¡û
>WENV170461033
CEVC01251266
[CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
207
123
-
Leu
CAA
[ENA]
¡û
>WENV170793581
MDSV01118719
[MDSV] marine metagenome; seawater
158
74
-
Leu
CAA
[ENA]
¡û
>WENV170894086
MDTD01060775
[MDTD] marine metagenome; seawater
2246
2330
+
Leu
CAA
[ENA]
¡û
>C181074258
CP022957
Bacteroidota
Maribacter cobaltidurans B1 [CP022957]
1359163
1359081
-
Leu
CAA
-
¡û
>C181196409
CP031153
Bacteroidota
Kordia sp. SMS9 [CP031153]
1805823
1805905
+
Leu
CAA
-
¡û
>W2012097302
VNIA01000001
Bacteroidota
Tenacibaculum adriaticum DSM 18961 [VNIA]
562354
562436
+
Leu
CAA
[ENA]
¡û
>W2110027154
BMIX01000002
Bacteroidota
Gramella forsetii CGMCC 1.15422 [BMIX]
218775
218693
-
Leu
CAA
[ENA]
¡û
>C211117976
CP058982
Bacteroidota
Tenacibaculum sp. AHE15PA [CP058982]
1078021
1077939
-
Leu
CAA
-
¡û
>C211118022
CP058983
Bacteroidota
Tenacibaculum sp. AHE14PA [CP058983]
2239259
2239177
-
Leu
CAA
-
¡û
>C211247977
CP068439
Bacteroidota
Aequorivita sp. KX20305 [CP068439]
1250794
1250712
-
Leu
CAA
-
¡û
>C231289088
CP091036
Bacteroidota
Antarcticibacterium sp. 1MA-6-2 [CP091036]
3204503
3204585
+
Leu
CAA
-
¡û
>C231571193
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
79441
79523
+
Leu
CAA
-
¡û
>C241022534
CP019288
Bacteroidota
Kordia antarctica IMCC3317 [CP019288]
3982296
3982378
+
Leu
CAA
-
¡û
>C241156874
CP053590
Bacteroidota
Aquimarina sp. TRL1 [CP053590]
2098059
2098143
+
Leu
CAA
-
¡û
>W2110804157
WXXZ01000009
Bacteroidota
Tenacibaculum piscium TNO066 [WXXZ]
24519
24437
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK