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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108836 (27 seq.)
>W1711167286
LVWE01000058
Bacteroidota
Polaribacter atrinae [LVWE]
61350
61434
+
Ser
GCT
[ENA]
¡û
>W1711584450
MNYM01000024
Bacteroidota
Flavobacteriaceae bacterium CG2_30_31_66 [MNYM]
47354
47270
-
Ser
GCT
[ENA]
¡û
>WENV181322800
OFKU01023356
[OFKU] marine metagenome; sea ice
109
27
-
Ser
GCT
[ENA]
¡û
>WENV183622957
OOFW01063373
[OOFW] marine metagenome; sea ice
343
261
-
Ser
GCT
[ENA]
¡û
>WENV170326081
CEST01086974
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
140
56
-
Ser
GCT
[ENA]
¡û
>WENV170537613
CEWR01018232
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
139
55
-
Ser
GCT
[ENA]
¡û
>WENV170625479
FUWD013198400
[FUWD] metagenome; unknown
795
711
-
Ser
GCT
[ENA]
¡û
>WENV170628559
FUWD013248888
[FUWD] metagenome; unknown
19282
19366
+
Ser
GCT
[ENA]
¡û
>WENV170918818
MDTF01003599
[MDTF] marine metagenome; seawater
176
92
-
Ser
GCT
[ENA]
¡û
>W1910796532
MSCK01000001
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
729377
729459
+
Ser
GCT
[ENA]
¡û
>W1910796593
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
1252042
1251960
-
Ser
GCT
[ENA]
¡û
>W1810173129
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
2117211
2117129
-
Ser
GCT
[ENA]
¡û
>W2010904167
MSCK01000001
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
729377
729459
+
Ser
GCT
[ENA]
¡û
>W2010904228
MSCL01000001
Bacteroidota
Polaribacter gangjinensis KCTC 22729 [MSCL]
1252042
1251960
-
Ser
GCT
[ENA]
¡û
>W2012435334
WTLD01000017
Bacteroidota
Polaribacter sp. 11A2H [WTLD]
4096
4014
-
Ser
GCT
[ENA]
¡û
>W2012435588
WTPZ01000004
Bacteroidota
Polaribacter sp. 20A6 [WTPZ]
5168
5086
-
Ser
GCT
[ENA]
¡û
>C211118070
CP058984
Bacteroidota
Polaribacter sp. R2A056_3_33 [CP058984]
2878067
2878149
+
Ser
GCT
-
¡û
>C211118107
CP058985
Bacteroidota
Polaribacter sp. AHE13PA [CP058985]
365099
365181
+
Ser
GCT
-
¡û
>C211118166
CP058986
Bacteroidota
Polaribacter sp. HaHaR_3_91 [CP058986]
1450268
1450350
+
Ser
GCT
-
¡û
>C211331728
CP074436
Bacteroidota
Polaribacter sp. Q13 [CP074436]
1743788
1743706
-
Ser
GCT
-
¡û
>C211367037
CP079195
Bacteroidota
Polaribacter sp. NJDZ03 [CP079195]
1420771
1420689
-
Ser
GCT
-
¡û
>C231470611
CP103460
Bacteroidota
Polaribacter undariae KCTC 42175 [CP103460]
1635646
1635564
-
Ser
GCT
-
¡û
>W2110776910
VRML01000009
Bacteroidota
Polaribacter gangjinensis JCM 16152 [VRML]
219155
219073
-
Ser
GCT
[ENA]
¡û
>C241114921
CP047026
Bacteroidota
Polaribacter sp. L3A8 [CP047026]
1211507
1211425
-
Ser
GCT
-
¡û
>W1511296858
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
1223972
1224056
+
Ser
GCT
[ENA]
¡û
>W1511297074
JPDS01000001
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
1289253
1289169
-
Ser
GCT
[ENA]
¡û
>W1610977617
LVWE01000058
Bacteroidota
Polaribacter atrinae [LVWE]
61350
61434
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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