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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109016 (22 seq.)
>WENV180016548
FSVH01000119
[FSVH] metagenome; soil
53645
53561
-
Leu
CAA
[ENA]
¡û
>WENV180020347
FTCZ01001915
[FTCZ] metagenome; soil
73134
73050
-
Leu
CAA
[ENA]
¡û
>WENV180020771
FTDB01001343
[FTDB] metagenome; soil
2134
2218
+
Leu
CAA
[ENA]
¡û
>WENV180020995
FTDJ01000492
[FTDJ] metagenome; soil
3125
3041
-
Leu
CAA
[ENA]
¡û
>WENV180026283
FTIT01000891
[FTIT] metagenome; soil
5536
5452
-
Leu
CAA
[ENA]
¡û
>WENV180026314
FTIT01001410
[FTIT] metagenome; soil
9542
9458
-
Leu
CAA
[ENA]
¡û
>WENV180028772
FTJH01000005
[FTJH] metagenome; soil
4700
4616
-
Leu
CAA
[ENA]
¡û
>W141136701
AWGB01000062
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AWGB]
26355
26439
+
Leu
CAA
[ENA]
¡û
>W141136712
AWGC01000006
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
89720
89804
+
Leu
CAA
[ENA]
¡û
>W141136756
AWGD01000008
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
83175
83259
+
Leu
CAA
[ENA]
¡û
>WENV183697036
OUNJ010000907
[OUNJ] metagenome; soil
4914
4830
-
Leu
CAA
[ENA]
¡û
>WENV183697220
OUNJ010086659
[OUNJ] metagenome; soil
165
249
+
Leu
CAA
[ENA]
¡û
>WENV183728473
PJTQ01000066
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
19819
19735
-
Leu
CAA
[ENA]
¡û
>WENV183739868
PJUF01000035
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
19819
19735
-
Leu
CAA
[ENA]
¡û
>W2010435378
JAAALA010000011
Alphaproteobacteria
Caulobacter sp. SLTY [JAAALA]
91590
91674
+
Leu
CAA
[ENA]
¡û
>W2010534545
JAAOZC010000001
Alphaproteobacteria
Sphingomonas vulcanisoli CECT 8804 [JAAOZC]
27755
27839
+
Leu
CAA
[ENA]
¡û
>C211121481
CP059297
Alphaproteobacteria
Brevundimonas sp. AJA228-03 [CP059297]
147046
147130
+
Leu
CAA
-
¡û
>C231560150
CP114542
Alphaproteobacteria
Brevundimonas subvibrioides Br6 [CP114542]
592397
592313
-
Leu
CAA
-
¡û
>C231566370
CP115463
Alphaproteobacteria
Caulobacter sp. NIBR1757 [CP115463]
1980075
1980159
+
Leu
CAA
-
¡û
>C231566494
CP115465
Alphaproteobacteria
Brevundimonas sp. NIBR11 [CP115465]
60522
60438
-
Leu
CAA
-
¡û
>C10102228
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
695527
695443
-
Leu
CAA
[Ensembl]
¡û
>W11123409
ADUH01000302
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
469
385
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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