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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109034 (27 seq.)
>W1712002245
NEED01000071
Cyanobacteriota
unicellular cyanobacterium SU2 [NEED]
113340
113259
-
Leu
GAG
[ENA]
¡û
>W1712017620
NETF01000171
Cyanobacteriota
unicellular cyanobacterium SU3 [NETF]
10722
10641
-
Leu
GAG
[ENA]
¡û
>C021158
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
1421319
1421238
-
Leu
GAG
[Ensembl]
¡û
>W141038607
ALVZ01000234
Cyanobacteriota
Xenococcus sp. PCC 7305 [ALVZ]
81687
81768
+
Leu
GAG
[ENA]
¡û
>W141247026
CAQK01000716
Cyanobacteriota
Crocosphaera watsonii WH 8502 [CAQK]
5789
5870
+
Leu
GAG
[ENA]
¡û
>W141247060
CAQL01000895
Cyanobacteriota
Crocosphaera watsonii WH 0005 [CAQL]
9766
9847
+
Leu
GAG
[ENA]
¡û
>W141247101
CAQM01000796
Cyanobacteriota
Crocosphaera watsonii WH 0401 [CAQM]
4063
4144
+
Leu
GAG
[ENA]
¡û
>W141247133
CAQN01000887
Cyanobacteriota
Crocosphaera watsonii WH 0402 [CAQN]
2921
3002
+
Leu
GAG
[ENA]
¡û
>C08003957
CP000806
Cyanobacteriota
Crocosphaera subtropica ATCC 51142 [CP000806, CP000807]
315216
315297
+
Leu
GAG
[Ensembl]
¡û
>WENV183803106
PVBE010812560
[PVBE] marine metagenome; water
3605
3524
-
Leu
GAG
[ENA]
¡û
>WENV170362411
CETM01070155
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
183
102
-
Leu
GAG
[ENA]
¡û
>WENV170393164
CEUB01133307
[CEUB] marine metagenome genome assembly TARA_138_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
392
309
-
Leu
GAG
[ENA]
¡û
>WENV170887535
MDTC01241355
[MDTC] marine metagenome; seawater
1536
1617
+
Leu
GAG
[ENA]
¡û
>WENV171002950
NJIW01002996
[NJIW] biofilm metagenome; Green berry consortia from Sippewissett Salt Marsh
293
212
-
Leu
GAG
[ENA]
¡û
>C191001480
AP018341
Cyanobacteriota
cyanobacterium endosymbiont of Rhopalodia gibberula [AP018341]
637414
637331
-
Leu
GAG
-
¡û
>W1810271977
PRLH01000155
Cyanobacteriota
Cyanothece sp. BG0011 [PRLH]
12235
12154
-
Leu
GAG
[ENA]
¡û
>W1810519982
QCFX01000028
Cyanobacteriota
Prochlorococcus sp. AG-363-N20 [QCFX]
3519
3438
-
Leu
GAG
[ENA]
¡û
>W1810528225
QCSO01000016
Cyanobacteriota
Synechococcus sp. AG-670-F22 [QCSO]
25501
25420
-
Leu
GAG
[ENA]
¡û
>W1810528972
QCTV01000025
Cyanobacteriota
Synechococcus sp. AG-676-C06 [QCTV]
16493
16574
+
Leu
GAG
[ENA]
¡û
>W1810529271
QCUH01000035
Cyanobacteriota
Synechococcus sp. AG-679-A02 [QCUH]
9031
9112
+
Leu
GAG
[ENA]
¡û
>W1810529855
QCVE01000027
Cyanobacteriota
Synechococcus sp. AG-683-F20 [QCVE]
1206
1287
+
Leu
GAG
[ENA]
¡û
>C151000967
AP012549
Cyanobacteriota
cyanobacterium endosymbiont of Epithemia turgida isolate EtSB Lake [AP012549]
683977
683894
-
Leu
GAG
[Ensembl]
¡û
>W2010071017
ANCI01000003
Cyanobacteriota
Chroococcidiopsis sp. PCC 6712 [ANCI]
1729369
1729450
+
Leu
GAG
[ENA]
¡û
>W2110233928
JACJTW010000002
Cyanobacteriota
Synechococcus elongatus FACHB-1061 [JACJTW]
13384
13465
+
Leu
GAG
[ENA]
¡û
>C231668529
OX373462
Cyanobacteriota
Cyanobacterium sp. uoEpiScrs1 [OX373462]
1105223
1105140
-
Leu
GAG
-
¡û
>C241041570
CP034671
Cyanobacteriota
Synechococcus elongatus PCC 11802 [CP034671]
2738721
2738803
+
Leu
GAG
-
¡û
>W121002184
AESD01000575
Cyanobacteriota
Crocosphaera watsonii WH 0003 [AESD]
8536
8455
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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