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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.109110 (35 seq.)
>C025509
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
376874
376955
+
Leu
CAA
[Ensembl]
¡û
>WENV180012887
FMSI01027829
[FMSI] soil metagenome; Soil
1856
1937
+
Leu
CAA
[ENA]
¡û
>WENV181414128
OGCL01000035
[OGCL] hot springs metagenome; Hot spring water
34217
34298
+
Leu
CAA
[ENA]
¡û
>C181030470
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1642251
1642332
+
Leu
CAA
-
¡û
>C191001199
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
438551
438632
+
Leu
CAA
-
¡û
>C191085209
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
216031
216112
+
Leu
CAA
-
¡û
>C141007928
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
755639
755720
+
Leu
CAA
-
¡û
>C201088949
CP040671
Cyanobacteriota
Thermosynechococcus sp. CL-1 [CP040671]
2246929
2246848
-
Leu
CAA
-
¡û
>C211280896
CP070960
Cyanobacteriota
Thermosynechococcus sp. TA-1 [CP070960]
744722
744803
+
Leu
CAA
-
¡û
>C231396189
CP098039
Cyanobacteriota
Thermosynechococcus sp. HN-54 [CP098039]
108889
108808
-
Leu
CAA
-
¡û
>C241188889
CP096204
Cyanobacteriota
Thermosynechococcus sp. B0 [CP096204]
2272893
2272812
-
Leu
CAA
-
¡û
>C241190867
CP096573
Cyanobacteriota
Thermosynechococcus sp. B1 [CP096573]
2248917
2248836
-
Leu
CAA
-
¡û
>C241192283
CP097584
Cyanobacteriota
Thermosynechococcus sp. B3 [CP097584]
2252049
2251968
-
Leu
CAA
-
¡û
>C241293645
CP130344
Cyanobacteriota
Thermosynechococcus sp. PP45 [CP130344]
742085
742166
+
Leu
CAA
-
¡û
>C241293704
CP130346
Cyanobacteriota
Thermosynechococcus sp. HY596 [CP130346]
2279797
2279716
-
Leu
CAA
-
¡û
>C241293731
CP130347
Cyanobacteriota
Thermosynechococcus sp. JY1339 [CP130347]
2534777
2534696
-
Leu
CAA
-
¡û
>C241316033
CP134166
Cyanobacteriota
Thermosynechococcus sp. PP22 [CP134166]
738906
738987
+
Leu
CAA
-
¡û
>C241316071
CP134167
Cyanobacteriota
Thermosynechococcus sp. PP551 [CP134167]
743001
743082
+
Leu
CAA
-
¡û
>C241316109
CP134168
Cyanobacteriota
Thermosynechococcus sp. PP555 [CP134168]
743001
743082
+
Leu
CAA
-
¡û
>C241316147
CP134169
Cyanobacteriota
Thermosynechococcus sp. PKX82 [CP134169]
740346
740427
+
Leu
CAA
-
¡û
>C241316185
CP134170
Cyanobacteriota
Thermosynechococcus sp. PKX91 [CP134170]
754459
754540
+
Leu
CAA
-
¡û
>C241316223
CP134171
Cyanobacteriota
Thermosynechococcus sp. PKX95 [CP134171]
754459
754540
+
Leu
CAA
-
¡û
>C241316261
CP134172
Cyanobacteriota
Thermosynechococcus sp. WL11 [CP134172]
754598
754679
+
Leu
CAA
-
¡û
>C241316299
CP134173
Cyanobacteriota
Thermosynechococcus sp. WL15 [CP134173]
754601
754682
+
Leu
CAA
-
¡û
>C241316337
CP134174
Cyanobacteriota
Thermosynechococcus sp. WL17 [CP134174]
754598
754679
+
Leu
CAA
-
¡û
>C241316375
CP134175
Cyanobacteriota
Thermosynechococcus sp. GLH187 [CP134175]
747073
747154
+
Leu
CAA
-
¡û
>C241316413
CP134176
Cyanobacteriota
Thermosynechococcus sp. GLH333 [CP134176]
747143
747224
+
Leu
CAA
-
¡û
>C241316451
CP134177
Cyanobacteriota
Thermosynechococcus sp. GLH87 [CP134177]
747074
747155
+
Leu
CAA
-
¡û
>C241316489
CP134178
Cyanobacteriota
Thermosynechococcus sp. TG215 [CP134178]
749939
750020
+
Leu
CAA
-
¡û
>C241316527
CP134179
Cyanobacteriota
Thermosynechococcus sp. TG218 [CP134179]
749939
750020
+
Leu
CAA
-
¡û
>C241316575
CP134180
Cyanobacteriota
Thermosynechococcus sp. JY1331 [CP134180]
2534708
2534627
-
Leu
CAA
-
¡û
>C241316603
CP134181
Cyanobacteriota
Thermosynechococcus sp. QS41 [CP134181]
749068
749149
+
Leu
CAA
-
¡û
>C241316662
CP134182
Cyanobacteriota
Thermosynechococcus sp. HY591 [CP134182]
2279797
2279716
-
Leu
CAA
-
¡û
>C241316700
CP134183
Cyanobacteriota
Thermosynechococcus sp. HY593 [CP134183]
2279642
2279561
-
Leu
CAA
-
¡û
>C241316802
CP134200
Cyanobacteriota
Thermosynechococcus sp. QKsg1 [CP134200]
2257487
2257406
-
Leu
CAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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